mRNA_10180 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|4647
Unique NamemRNA_10180
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|4647 vs. uniprot
Match: A0A836CMT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMT0_9STRA)

HSP 1 Score: 258 bits (660), Expect = 2.040e-85
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1 
Query:   22 MRQHDATLERLQPRASESASSACALSKIAVVVIVLQSSFTPVWTLAVPEAPASSPALLSRGMKLPLPSDTQSALDAMNKNTNTTLRQEVEALXXXXXXXXXXXXXXXXXXXDLKQGMHDVKTDTESLRPLALDVAYVKGLVMSCTVMVALILLAMVVVVLIEIMESY 522
            MRQHDATLERLQPRASESASSACALSKIAVVVIVLQSSFTPVWTLAVPEAPASSPALLSRGMKLPLPSDTQSALDAMNKNTNTTLRQEVEALXXXXXXXXXXXXXXXXXXXDLKQGMHDVKTDTESLRPLALDVAYVKGLVMSCTVMVALILLAMVVVVLIEIMESY
Sbjct:    1 MRQHDATLERLQPRASESASSACALSKIAVVVIVLQSSFTPVWTLAVPEAPASSPALLSRGMKLPLPSDTQSALDAMNKNTNTTLRQEVEALXXXXXXXXXXXXXXXXXXXDLKQGMHDVKTDTESLRPLALDVAYVKGLVMSCTVMVALILLAMVVVVLIEIMESY 167
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|4647 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CMT0_9STRA2.040e-85100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_104contigContig_104:102617..103786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|4647|CE4646_42
Hectar predicted targeting categoryother localisation
TranscriptId4969
TrackFilteredModels1
ProteinId4647
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|4647gene_10180Tribonema minus UTEX_B_3156 geneContig_104 102617..103786 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10180_1exon_10180_1Tribonema minus UTEX_B_3156 exonContig_104 102617..102782 +
exon_10180_2exon_10180_2Tribonema minus UTEX_B_3156 exonContig_104 103334..103786 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10180UTR5_10180Tribonema minus UTEX_B_3156 five_prime_UTRContig_104 102617..102637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10180CDS_10180Tribonema minus UTEX_B_3156 CDSContig_104 102638..102782 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10180UTR3_10180Tribonema minus UTEX_B_3156 three_prime_UTRContig_104 103693..103786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|4647Trimin1|4647|CE4646_42Tribonema minus UTEX_B_3156 polypeptideContig_104 102638..103692 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10180 ID=mRNA_10180|Name=jgi.p|Trimin1|4647|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=619bp|location=Sequence derived from alignment at Contig_104:102617..103786+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGGAGGAACTCGACAGACGATGCGTCAGCATGATGCAACACTCGAGCG
CCTCCAACCGCGCGCCTCCGAATCAGCCTCCTCAGCCTGTGCCCTGTCAA
AGATCGCAGTCGTCGTGATTGTGCTCCAGAGTTCCTTCACACCGGTCTGG
ACTCTGGCGGTTCCTGAAGCGCCTGCATCGTCGCCAGCCCTCCTGTCACG
GGGCATGAAACTCCCCCTTCCATCAGACACGCAGTCTGCACTGGATGCAA
TGAACAAGAACACCAACACGACCCTGAGGCAGGAGGTTGAAGCTCTGAGG
GAGGATATGGCAGCCATGCAACAGCATGTCGGGCACATGCAGGGGCAGCT
GGCTGACTTGAAGCAAGGCATGCACGATGTGAAGACTGACACGGAAAGCC
TCCGCCCGCTGGCACTGGATGTTGCATATGTGAAAGGCCTCGTGATGTCG
TGCACTGTTATGGTTGCGCTCATTCTCCTGGCGATGGTGGTCGTGGTGCT
GATTGAGATCATGGAAAGCTACTAGAGGCGTTTGTGCATACACGGCAGTG
CTCTGGTGCCCGATGTGAATACCCAGCGTTTACATACATTGTGAATTGAA
TGAATTATGATACGGTGAG
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protein sequence of jgi.p|Trimin1|4647

>Trimin1|4647|CE4646_42 ID=Trimin1|4647|CE4646_42|Name=jgi.p|Trimin1|4647|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp
MRQHDATLERLQPRASESASSACALSKIAVVVIVLQSSFTPVWTLAVPEA
PASSPALLSRGMKLPLPSDTQSALDAMNKNTNTTLRQEVEALREDMAAMQ
QHVGHMQGQLADLKQGMHDVKTDTESLRPLALDVAYVKGLVMSCTVMVAL
ILLAMVVVVLIEIMESY*
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mRNA from alignment at Contig_104:102617..103786+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10180 ID=mRNA_10180|Name=jgi.p|Trimin1|4647|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1170bp|location=Sequence derived from alignment at Contig_104:102617..103786+ (Tribonema minus UTEX_B_3156 )
CAGGGAGGAACTCGACAGACGATGCGTCAGCATGATGCAACACTCGAGCG
CCTCCAACCGCGCGCCTCCGAATCAGCCTCCTCAGCCTGTGCCCTGTCAA
AGATCGCAGTCGTCGTGATTGTGCTCCAGAGTTCCTTCACACCGGTCTGG
ACTCTGGCGGTTCCTGGTAAGCGACCAGCTGCCTGGCAGCGTCTGACGCT
TTGATTATACCCTACGACAGCGGGACTCCTAAAATATGGTGCGTCTGATA
TGGTGCGATAGGAGTTGCTTGCAACTTTCACAAAAGGCACGGGAATGTCG
GCGTGCATGGCTGCAACGTCTATATATGTACGCTAAGTGAATGGGGTACT
GTATTTCACATATACGTTTAACGATAGCTCGTGACCCAGCTAACTGTTCC
GACTCGTTCCAATTGTAATTGTAGACTTCACTCGGGGGCACACACACAGA
CATTTCAGCGCCACACCTACGTCAAGGCGGGGTGGCAAGAACCTGCGAAG
CATTGCGCACACTGTTTAGGTGATGTACATATCTCACACTGGCAGGCCCA
TCCCATGCACAAGTTGGATGGAATATCTCTGCGTGATCTTTCCATTCAGC
AAATTTCAACAAATGCATTGCACCTGCTTCTGTGTTAACCACTGTAATGT
GAACACAGTTGTGTTCCTCTCACTGCACAACGCTTCTACTTGTTTACTCT
CGTTGTGCACCCCACAGAAGCGCCTGCATCGTCGCCAGCCCTCCTGTCAC
GGGGCATGAAACTCCCCCTTCCATCAGACACGCAGTCTGCACTGGATGCA
ATGAACAAGAACACCAACACGACCCTGAGGCAGGAGGTTGAAGCTCTGAG
GGAGGATATGGCAGCCATGCAACAGCATGTCGGGCACATGCAGGGGCAGC
TGGCTGACTTGAAGCAAGGCATGCACGATGTGAAGACTGACACGGAAAGC
CTCCGCCCGCTGGCACTGGATGTTGCATATGTGAAAGGCCTCGTGATGTC
GTGCACTGTTATGGTTGCGCTCATTCTCCTGGCGATGGTGGTCGTGGTGC
TGATTGAGATCATGGAAAGCTACTAGAGGCGTTTGTGCATACACGGCAGT
GCTCTGGTGCCCGATGTGAATACCCAGCGTTTACATACATTGTGAATTGA
ATGAATTATGATACGGTGAG
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Coding sequence (CDS) from alignment at Contig_104:102617..103786+

>mRNA_10180 ID=mRNA_10180|Name=jgi.p|Trimin1|4647|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=504bp|location=Sequence derived from alignment at Contig_104:102617..103786+ (Tribonema minus UTEX_B_3156 )
ATGCGTCAGCATGATGCAACACTCGAGCGCCTCCAACCGCGCGCCTCCGA
ATCAGCCTCCTCAGCCTGTGCCCTGTCAAAGATCGCAGTCGTCGTGATTG
TGCTCCAGAGTTCCTTCACACCGGTCTGGACTCTGGCGGTTCCTGAAGCG
CCTGCATCGTCGCCAGCCCTCCTGTCACGGGGCATGAAACTCCCCCTTCC
ATCAGACACGCAGTCTGCACTGGATGCAATGAACAAGAACACCAACACGA
CCCTGAGGCAGGAGGTTGAAGCTCTGAGGGAGGATATGGCAGCCATGCAA
CAGCATGTCGGGCACATGCAGGGGCAGCTGGCTGACTTGAAGCAAGGCAT
GCACGATGTGAAGACTGACACGGAAAGCCTCCGCCCGCTGGCACTGGATG
TTGCATATGTGAAAGGCCTCGTGATGTCGTGCACTGTTATGGTTGCGCTC
ATTCTCCTGGCGATGGTGGTCGTGGTGCTGATTGAGATCATGGAAAGCTA
CTAG
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