mRNA_10096 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|82606 vs. uniprot
Match: A0A835YM13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM13_9STRA) HSP 1 Score: 409 bits (1052), Expect = 3.540e-143 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 2 Query: 134 MEVRGGAMEGKRSIVDRYMAILERRPLYTKMATNYLICFLGDVSCQAMGAGSLRALSRAFDVKRAVLYGSMGALYLAPLAHYWYGALDSAIVKTPAGQVDGAEKPSTATRVTGALKMLFIDQAIASPIVNSGFLFAYAAFTGLAGGSGFGAALHSGSAKVQSALWPTLVASWKIWPAANFLNFMFVPLQLRALFLSVVGVAWNLVLSSIAN 766 MEVRGGAMEGKRSIVDRYMAILERRPLYTKMATNYLICFLGDVSCQAMGAGSLRALSRAFDVKRAVLYGSMGALYLAPLAHYWYGALDSAIVKTPAGQVDGAEKPSTATRVTGALKMLFIDQAIASPIVNSGFLFAYAAFTGLAGGSGFGAALHSGSAKVQSALWPTLVASWKIWPAANFLNFMFVPLQLRALFLSVVGVAWNLVLSSIAN Sbjct: 1 MEVRGGAMEGKRSIVDRYMAILERRPLYTKMATNYLICFLGDVSCQAMGAGSLRALSRAFDVKRAVLYGSMGALYLAPLAHYWYGALDSAIVKTPAGQVDGAEKPSTATRVTGALKMLFIDQAIASPIVNSGFLFAYAAFTGLAGGSGFGAALHSGSAKVQSALWPTLVASWKIWPAANFLNFMFVPLQLRALFLSVVGVAWNLVLSSIAN 211
BLAST of jgi.p|Trimin1|82606 vs. uniprot
Match: D7G6L5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L5_ECTSI) HSP 1 Score: 158 bits (400), Expect = 2.600e-43 Identity = 82/216 (37.96%), Postives = 129/216 (59.72%), Query Frame = 2 Query: 140 VRGGAMEGKRSIVDRYMAILERRPLYTKMATNYLICFLGDVSCQAMG-------AGSLRALSRAFDVKRAVLYGSMGALYLAPLAHYWYGALDSAIVKTPAGQVDGAEKPSTATRVTGALKMLFIDQAIASPIVNSGFLFAYAAFTGLAGGSGFGAALHSGSAKVQSALWPTLVASWKIWPAANFLNFMFVPLQLRALFLSVVGVAWNLVLSSIAN 766 V G G ++ Y+ L+ +P+ TK+ T+ +IC +GD+ QA+ + +L + A + KR +YG +GAL++AP+ HYW+ AL++A A V GA PS A R+ ALKM+ +DQ I +P++N+GF+F + T L G+G + V++ +W T++ WK+WP AN +NF FVP +LR LFL+ VG+ WN+ LS+ N Sbjct: 81 VESGNKNGGDGLLASYLRALDTKPIITKVVTSGVICGIGDIMAQALAFKTAATESFTLGSFLAALEFKRLAIYGVLGALWIAPVVHYWFDALEAATKDKKA--VAGAPAPSFAMRMFKALKMVTLDQTIGAPLINAGFMFLFTFATALTSGAGGIESGKKAGTMVKNGIWSTMLVCWKLWPIANMINFAFVPAKLRVLFLNFVGLGWNIYLSAAVN 294
BLAST of jgi.p|Trimin1|82606 vs. uniprot
Match: D6PWV8_9PHAE (PXMP2/4 family protein 2 (Fragment) n=5 Tax=Fucus TaxID=3011 RepID=D6PWV8_9PHAE) HSP 1 Score: 146 bits (368), Expect = 1.630e-39 Identity = 74/204 (36.27%), Postives = 123/204 (60.29%), Query Frame = 2 Query: 164 KRSIVDRYMAILERRPLYTKMATNYLICFLGDVSCQAMG-------AGSLRALSRAFDVKRAVLYGSMGALYLAPLAHYWYGALDSAIVKTPAGQVDGAEKPSTATRVTGALKMLFIDQAIASPIVNSGFLFAYAAFTGLAGGSGFGAALHSGSAKVQSALWPTLVASWKIWPAANFLNFMFVPLQLRALFLSVVGVAWNLVLS 754 K ++++Y+ +L+RRPL TKM T+ +IC +GDV QA+ +LR+ + A + KR +YG++GA+++APL HYW+ AL+ + D + ++ ALKM+ +DQ I +P+VN+GF+F + T + G+ +A V+ + T++ W++WP AN +NF +VP +LR LFL+ VG+ WN+ LS Sbjct: 15 KPGVLNKYLRVLDRRPLETKMITSGVICAIGDVVAQALSFSNSAVTPNNLRSFANALEFKRLAIYGALGAVWVAPLCHYWFDALEDFF------KGDNNPLDTFKGKMIKALKMVTVDQGIGAPVVNAGFMFLFTLATAMVSGTSPTSAFKKAGRFVRDNIKGTMLVCWRLWPVANLINFAYVPPKLRVLFLNFVGLGWNIFLS 212
BLAST of jgi.p|Trimin1|82606 vs. uniprot
Match: A0A836CMN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMN9_9STRA) HSP 1 Score: 142 bits (359), Expect = 1.800e-37 Identity = 85/210 (40.48%), Postives = 113/210 (53.81%), Query Frame = 2 Query: 185 YMAILERRPLYTKMATNYLICFLGDVSCQAMGAGSLRALSRAFDVKRAVLYGSMGALYLAPLAHYWYGALDSAIVKTPAGQVDGAEKPSTATRVTGALKMLFIDQAIASPIVNSGFLFAYAAFTGLAGGSGFGAALHSGSAKVQ------------------SALWPTLVASWKIWPAANFLNFMFVPLQLRALFLSVVGVAWNLVLSSI 760 Y+A L+RRPL TKM T+ ++C LGD CQ + AG AL A D +R VLY +MG LY+AP D T + AL M FID +ASP++N GFL+ + A LA G+ A +G K+Q + LWPTL+ASWK+WP ANF NF+ VP LR L+L+VVG+ W+ VLS++ Sbjct: 83 YLATLKRRPLPTKMVTSAIVCGLGDAICQMLTAGGFGALRHALDFRRLVLYSTMGGLYVAP---------------------DMVPGKVTLVKAKKALNMTFID-TLASPLINGGFLYVFTAANCLASGAAVTGAAGAGLEKLQVLANLMRIANLNNIVDKNTCLWPTLLASWKMWPLANFFNFLLVPPHLRVLYLNVVGLVWHTVLSAL 270
BLAST of jgi.p|Trimin1|82606 vs. uniprot
Match: A0A6H5K3K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K4_9PHAE) HSP 1 Score: 126 bits (316), Expect = 5.520e-30 Identity = 60/143 (41.96%), Postives = 94/143 (65.73%), Query Frame = 2 Query: 338 GSMGALYLAPLAHYWYGALDSAIVKTPAGQVDGAEKPSTATRVTGALKMLFIDQAIASPIVNSGFLFAYAAFTGLAGGSGFGAALHSGSAKVQSALWPTLVASWKIWPAANFLNFMFVPLQLRALFLSVVGVAWNLVLSSIAN 766 G +GAL++AP+ HYW+ L++A A V GA PS +TR+ ALKM+ +DQ I +P+VN+GF+F + T L G+G + V++ +W T++ WK+WP AN +NF++VP++LR LF++ VG+ WN+ LS+ N Sbjct: 270 GVLGALWIAPVVHYWFDTLEAAFKDKKA--VPGAPAPSFSTRMVKALKMVILDQGIGAPLVNAGFMFLFTFATALTSGTGGIESGKKAGIMVKNGIWGTMLVCWKLWPIANMINFLYVPVKLRVLFMNFVGLGWNIYLSAAVN 410
BLAST of jgi.p|Trimin1|82606 vs. uniprot
Match: A0A835YMP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP8_9STRA) HSP 1 Score: 114 bits (286), Expect = 8.040e-27 Identity = 81/266 (30.45%), Postives = 130/266 (48.87%), Query Frame = 2 Query: 5 ALLCACTVSAFAPQSSSLCTSSNKLDNVKRARKD----GLTTGALLRMEVRGG-----AMEGKRSIVDRYMAILERRPLYTKMATNYLICFLGDVSCQAMGAGSLRALSRAFDVKRAVLYGSMGALYLAPLAHYWYGALDSAIVKTPAGQVDGAEKPSTAT-RVTGALKMLFIDQAIASPIVNSGFLFAYAAFTGLAGGSGF--GAALHSGSAKVQSALWPTLVASWKIWPAANFLNFMFVPLQLRALFLSVVGVAWNLVLSSIAN 766 ALLCA V AFA S T+ +L+ ++ ++ + L M V+GG + + + ++Y+ L+RRPL TK T+ +I +GD Q + A + + + FD +R +Y + HYWY LD + P+T + + L +DQ + ++N+GF + + + G F GA + + K+ +WP L+ +WK+WPAANF+NF VP QLR LF + V + WN+ LS AN Sbjct: 12 ALLCASAVRAFASVPS--ITNGKQLNRIQMRNREQEQADVRRRVLATMAVQGGGDAKPSRGAPQQLWNKYLGQLDRRPLITKAWTSTIIGCIGDTIAQVLEART-KGIPFVFDTQRTAIYIFCAVAIGSTAVHYWYNFLDQKVAN-----------PNTVKGKWNRVFRQLAVDQTVGCTVLNAGFYIVHTIVSAVVMGRVFPLGALADTITGKLSREMWPMLINNWKLWPAANFINFSLVPPQLRVLFANFVAIFWNIYLSGSAN 263
BLAST of jgi.p|Trimin1|82606 vs. uniprot
Match: A0A7S2SVB6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVB6_9STRA) HSP 1 Score: 107 bits (268), Expect = 3.310e-24 Identity = 71/210 (33.81%), Postives = 106/210 (50.48%), Query Frame = 2 Query: 137 EVRGGAMEGKRSIVDRYMAILERRPLYTKMATNYLICFLGDVSCQAMGAGSLRALSRAFDVKRAVLYGSMGALYLAPLAHYWYGALDSAIVKTPAGQVDGAEKPSTATRVTGALKMLFIDQAIASPIVNSGFLFAYAAFTGLAGGSGFGAA--LHSGSAKVQSALWPTLVASWKIWPAANFLNFMFVPLQLRALFLSVVGVAWNLVLSSI 760 E+ GG G S+ +RY LE+RP++TKM T +I +GD+ Q + + D R Y L+L P HYW+ +D G++ K + RV L F+DQ + +N GF F +A G+ F L G K+ S +W TL+A+W++WP AN++NF FVPL+ R LF + V V W++ LS + Sbjct: 64 ELSGGKDAGP-SLWERYDRQLEKRPIFTKMWTCLVIGAIGDILAQRITTKFVD-----MDPMRIFQYSVAQFLFLGPSLHYWFNFIDYV------GKLPAIAKLKKSVRV---LVQTFVDQTVGVVTINGGFFFFFAVLQNTLDGTLFPLTRTLGQGWEKITSLMWVTLLANWRLWPLANWVNFQFVPLKYRVLFSNFVAVFWSIYLSVV 258
BLAST of jgi.p|Trimin1|82606 vs. uniprot
Match: A0A7S3Y660_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y660_HETAK) HSP 1 Score: 103 bits (256), Expect = 3.000e-22 Identity = 70/199 (35.18%), Postives = 107/199 (53.77%), Query Frame = 2 Query: 182 RYMAILERRPLYTKMATNYLICFLGDVSCQ---AMGAGSLRALSRAFDVKRAVLYGSMGALYLAPLAHYWYGALDSAIVKTPAGQVDGAEKPSTATRVTGALKMLFIDQAIASPIVNSGFLFAYAAFTGLAGGS-GFGAALHSGSAKVQSALWPTLVASWKIWPAANFLNFMFVPLQLRALFLSVVGVAWNLVLSSIAN 766 RY +L T+M T+ +I LGD CQ A+ AG+ +L DV+R +++G MGA Y + H W+ LD+ K + D +K ++ M+ IDQ + VN+GF+ + L G+ FG + + + + P L+ ++KIWPAANF+NF+ VPLQLR LF +VV + +N +LS I N Sbjct: 104 RYNELLVTHGAATRMTTSGVISALGDFLCQYLVAVKAGNPFSL----DVRRFLVFGFMGAFYFGTVIHAWFTRLDAFASKRFPNKEDHFKK---------SVAMICIDQTCGAVSVNAGFMLLFPLVNALTLGTFSFGTSFSAAWNDMLKNMIPVLLVNYKIWPAANFMNFLVVPLQLRLLFTNVVSLVYNALLSLIVN 289
BLAST of jgi.p|Trimin1|82606 vs. uniprot
Match: A0A812KNV9_9DINO (Mpv17 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812KNV9_9DINO) HSP 1 Score: 97.8 bits (242), Expect = 1.170e-20 Identity = 71/211 (33.65%), Postives = 99/211 (46.92%), Query Frame = 2 Query: 140 VRGGAMEG--KRSIVDRYMAILERRPLYTKMATNYLICFLGDVSCQAMGAGSLRALSRAFDVKRAVLYGSMGALYLAPLAHYWYGALDSAIVKTPAGQVDGAEKPSTATRVTGALKMLFIDQAIASPIVNSGFLFAYAAFTGLAGGSGFGAALHSGSAKVQSALWPTLVASWKIWPAANFLNFMFVPLQLRALFLSVVGVAWNLVLSSIAN 766 VRG A +G K S+ +Y A+L P+ TKM T+ +I LGD CQ + F V+R + G+MG L P H WYG L A+ T T K + +DQ + +PI+ S L A G AG ++Q + ++ +WK+WPAA LNF VP+Q + LF ++V V WN LS AN Sbjct: 34 VRGFAGQGAAKASLWAQYNALLATHPVRTKMVTSGVIAMLGDAGCQLLFE------DEGFSVRRQLELGAMGFLLRGPALHAWYGFLSRAV---------------TGTGALAVAKRILLDQLVFAPIIVSCILSFLAVAQGQAGDI---------PRRMQEQVPGAVLNNWKVWPAAQCLNFALVPVQHQVLFSNLVSVGWNGYLSWSAN 214
BLAST of jgi.p|Trimin1|82606 vs. uniprot
Match: A0A1V9Z850_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z850_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 2.210e-20 Identity = 64/198 (32.32%), Postives = 99/198 (50.00%), Query Frame = 2 Query: 170 SIVDRYMAILERRPLYTKMATNYLICFLGDVSCQAMGAGSLRALSRAFDVKRAVLYGSMGALYLAPLAHYWYGALDSAIVKTPAGQVDGAEKPSTATRVTGALKMLFIDQAIASPIVNSGFLFAYAAFTGLAGGSGFGAALHSGSAKVQSALWPTLVASWKIWPAANFLNFMFVPLQLRALFLSVVGVAWNLVLSSIA 763 S+ +Y+ +LER+PL TK+ T+ I LGD++CQ + FD+KR ++ ++G +Y+AP H WYG L+ AI G K + A R L +DQ + +P + F +A T A L AK+ + W + +W +W A F NF VP L+ LF +VVG+ WN +S ++ Sbjct: 29 SLWQKYLGLLERKPLPTKVVTSAGIAGLGDIACQTVFE------DHPFDIKRFAVFTTLGGVYIAPTLHIWYGFLNRAIA--------GTAKTAVAQR-------LVLDQFVFAPTFMASF---FAVLT--ATNDSDEPVLDRIVAKISNDWWGAVKTNWVVWIPAQFCNFGLVPPPLQVLFSNVVGLFWNAYMSYVS 200 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|82606 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10096 ID=mRNA_10096|Name=jgi.p|Trimin1|82606|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=845bp|location=Sequence derived from alignment at Contig_64:166547..170489+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGTGCGCTGCTCTGTGCGTGCACGGTATCGGCGTTCGCTCCCCAATCATback to top protein sequence of jgi.p|Trimin1|82606 >Trimin1|82606|CE82605_37 ID=Trimin1|82606|CE82605_37|Name=jgi.p|Trimin1|82606|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=212bp MEVRGGAMEGKRSIVDRYMAILERRPLYTKMATNYLICFLGDVSCQAMGAback to top mRNA from alignment at Contig_64:166547..170489+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10096 ID=mRNA_10096|Name=jgi.p|Trimin1|82606|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3943bp|location=Sequence derived from alignment at Contig_64:166547..170489+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_64:166547..170489+ >mRNA_10096 ID=mRNA_10096|Name=jgi.p|Trimin1|82606|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=636bp|location=Sequence derived from alignment at Contig_64:166547..170489+ (Tribonema minus UTEX_B_3156 )back to top |