mRNA_10068 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351829
Unique NamemRNA_10068
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351829 vs. uniprot
Match: A0A836CPA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPA3_9STRA)

HSP 1 Score: 437 bits (1123), Expect = 2.280e-152
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1 
Query:    1 MPAALLHAAXXXXXXXXLRYTPPLSFLALLGAAAGSHSMAAAVLPSTAGAXXXXXCAAIAALAAHFGCGVPAVPALLGAAAYALGASRHAATGALYAGPNVTLRRLSGSSCHSFVAATATLLLVPFACVWDWYSMALWLGNGDGVGAGELAALVAAGGAMFIAQKQLGRQAHTRLETGRAALASLVIAATMPDVHIGVYAWWGACAVALASALLPLRACGAVTDFSPSHTSRHRQLPQSPRSPAKTE 741
            MPAALLHAAXXXXXXXXLRYTPPLSFLALLGAAAGSHSMAAAVLPSTAGAXXXXXCAAIAALAAHFGCGVPAVPALLGAAAYALGASRHAATGALYAGPNVTLRRLSGSSCHSFVAATATLLLVPFACVWDWYSMALWLGNGDGVGAGELAALVAAGGAMFIAQKQLGRQAHTRLETGRAALASLVIAATMPDVHIGVYAWWGACAVALASALLPLRACGAVTDFSPSHTSRHRQLPQSPRSPAKTE
Sbjct:    1 MPAALLHAAXXXXXXXXLRYTPPLSFLALLGAAAGSHSMAAAVLPSTAGAXXXXXCAAIAALAAHFGCGVPAVPALLGAAAYALGASRHAATGALYAGPNVTLRRLSGSSCHSFVAATATLLLVPFACVWDWYSMALWLGNGDGVGAGELAALVAAGGAMFIAQKQLGRQAHTRLETGRAALASLVIAATMPDVHIGVYAWWGACAVALASALLPLRACGAVTDFSPSHTSRHRQLPQSPRSPAKTE 247
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351829 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CPA3_9STRA2.280e-152100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_100contigContig_100:505250..506815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351829|estExt_Genemark1.C_Ctg_1000073
Hectar predicted targeting categorysignal peptide
TranscriptId352151
TrackFilteredModels1
ProteinId351829
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351829gene_10068Tribonema minus UTEX_B_3156 geneContig_100 505250..506815 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10068_1exon_10068_1Tribonema minus UTEX_B_3156 exonContig_100 505250..505723 +
exon_10068_2exon_10068_2Tribonema minus UTEX_B_3156 exonContig_100 506256..506815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10068CDS_10068Tribonema minus UTEX_B_3156 CDSContig_100 505250..505723 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10068UTR3_10068Tribonema minus UTEX_B_3156 three_prime_UTRContig_100 506526..506815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351829Trimin1|351829|estExt_Genemark1.C_Ctg_1000073Tribonema minus UTEX_B_3156 polypeptideContig_100 505250..506525 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10068 ID=mRNA_10068|Name=jgi.p|Trimin1|351829|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1034bp|location=Sequence derived from alignment at Contig_100:505250..506815+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGCCGCGCTGCTGCACGCTGCCGCAGCCGCAGCCACCGCAGCAGC
GCTCCGCTACACCCCGCCGCTGTCGTTCCTGGCCCTTCTCGGCGCAGCAG
CGGGCTCACACAGCATGGCCGCTGCCGTGCTGCCGAGCACTGCCGGAGCA
GCAGCTGCAGTAGCCTGTGCTGCCATTGCCGCGCTCGCAGCGCATTTCGG
CTGCGGCGTGCCCGCTGTTCCGGCGCTGCTGGGCGCGGCGGCGTACGCCC
TCGGCGCGTCTCGGCACGCCGCAACAGGCGCGCTCTATGCAGGGCCCAAC
GTCACCTTGAGACGGCTAAGCGGTAGCTCGTGTCACAGCTTCGTGGCGGC
TACTGCAACGCTGCTGCTGGTGCCATTCGCGTGCGTTTGGGATTGGTATT
CGATGGCGCTCTGGCTGGGCAACGGCGATGGTGTTGGGGCTGGAGAGCTG
GCGGCGCTGGTGGCTGCTGGTGGCGCCATGTTCATTGCTCAGAAGCAGCT
GGGCCGACAAGCACACACGCGGCTAGAGACAGGCCGCGCCGCCCTCGCAT
CCCTCGTCATAGCAGCGACAATGCCAGATGTGCACATAGGGGTGTATGCC
TGGTGGGGAGCGTGTGCGGTGGCGCTGGCGAGCGCGCTGCTGCCGCTGCG
CGCATGCGGCGCAGTCACCGATTTTTCGCCATCCCACACATCCAGGCACA
GGCAGCTGCCCCAATCGCCCAGGTCCCCCGCAAAGACGGAATGAGGCTTG
CGCAGCTCCGCGCTTGCTCATGGCAGCTGAGTTAGTGCTCGGCCTGAACA
GCTGAGGCTCAGATGGAGCAGCCTGCACACTGCGCAGCGGCTGGGGCATT
GGTGAGCCAGAGCACTGGTCAGCCGGAGCAAGTCCCACATGTGTTTTGTT
TGTGCTCTGGTGTTTTGTGAATACACGTCAGCCCCACTTGAAGGCGGGCG
CGTGCACCAAAACCATCATCGATCAGAGACTCGCATTTGACACCGCTGTG
GCATCCGAGTCTAATCTTGACAGCCTCTTTCATC
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protein sequence of jgi.p|Trimin1|351829

>Trimin1|351829|estExt_Genemark1.C_Ctg_1000073 ID=Trimin1|351829|estExt_Genemark1.C_Ctg_1000073|Name=jgi.p|Trimin1|351829|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=248bp
MPAALLHAAAAAATAAALRYTPPLSFLALLGAAAGSHSMAAAVLPSTAGA
AAAVACAAIAALAAHFGCGVPAVPALLGAAAYALGASRHAATGALYAGPN
VTLRRLSGSSCHSFVAATATLLLVPFACVWDWYSMALWLGNGDGVGAGEL
AALVAAGGAMFIAQKQLGRQAHTRLETGRAALASLVIAATMPDVHIGVYA
WWGACAVALASALLPLRACGAVTDFSPSHTSRHRQLPQSPRSPAKTE*
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mRNA from alignment at Contig_100:505250..506815+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10068 ID=mRNA_10068|Name=jgi.p|Trimin1|351829|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1566bp|location=Sequence derived from alignment at Contig_100:505250..506815+ (Tribonema minus UTEX_B_3156 )
ATGCCGGCCGCGCTGCTGCACGCTGCCGCAGCCGCAGCCACCGCAGCAGC
GCTCCGCTACACCCCGCCGCTGTCGTTCCTGGCCCTTCTCGGCGCAGCAG
CGGGCTCACACAGCATGGCCGCTGCCGTGCTGCCGAGCACTGCCGGAGCA
GCAGCTGCAGTAGCCTGTGCTGCCATTGCCGCGCTCGCAGCGCATTTCGG
CTGCGGCGTGCCCGCTGTTCCGGCGCTGCTGGGCGCGGCGGCGTACGCCC
TCGGCGCGTCTCGGCACGCCGCAACAGGCGCGCTCTATGCAGGGCCCAAC
GTCACCTTGAGACGGCTAAGCGGTAGCTCGTGTCACAGCTTCGTGGCGGC
TACTGCAACGCTGCTGCTGGTGCCATTCGCGTGCGTTTGGGATTGGTATT
CGATGGCGCTCTGGCTGGGCAACGGCGATGGTGTTGGGGCTGGAGAGCTG
GCGGCGCTGGTGGCTGCTGGTGGCGTGGCGATGGCTGCCATGAATGAGGC
AAGTCACATCACGTTCAGCTGTGTGCAGAGGCAAACTGCAATCAATGCAT
TAGTCGCTGTAGAACTGGTAGGCTGCTTGTCAGTGCATGGTCAGCTGCTC
CAAGAGGCATGCGGTTTTGGCGCAATGCGCAGTTGATGGGATGCCTTGGC
ATAATGTACACACTTGTCGCTAGCGCGTCAATCTTGTATCTGCGCAACTC
GCATTCTTAAAGCATGCTGGCTGTGCACAGCAATTCTGGGAGCCTGCATG
ACAGCCACATTGGCCATAAGGATCAGGGCGCTCGGATCAGGGCGCTCGTC
AGGAACGTGCACGCGTAGCGATGCATTTATCCTGCATAGTTTATGAGTCA
TCACAGAGTGTGCCTTATGGCAACAGTGTCACTCCAAGCTCTTCCTCCCT
ATCAGCAAGTGCAGGACGCACAGCAAATAGCGATGCACTCGCGGCCAACC
CACACACGTCCGTCTTAGCACTGAAACCGCCTCGTGTAACCGCCATCCTG
ACGCAGGCCATGTTCATTGCTCAGAAGCAGCTGGGCCGACAAGCACACAC
GCGGCTAGAGACAGGCCGCGCCGCCCTCGCATCCCTCGTCATAGCAGCGA
CAATGCCAGATGTGCACATAGGGGTGTATGCCTGGTGGGGAGCGTGTGCG
GTGGCGCTGGCGAGCGCGCTGCTGCCGCTGCGCGCATGCGGCGCAGTCAC
CGATTTTTCGCCATCCCACACATCCAGGCACAGGCAGCTGCCCCAATCGC
CCAGGTCCCCCGCAAAGACGGAATGAGGCTTGCGCAGCTCCGCGCTTGCT
CATGGCAGCTGAGTTAGTGCTCGGCCTGAACAGCTGAGGCTCAGATGGAG
CAGCCTGCACACTGCGCAGCGGCTGGGGCATTGGTGAGCCAGAGCACTGG
TCAGCCGGAGCAAGTCCCACATGTGTTTTGTTTGTGCTCTGGTGTTTTGT
GAATACACGTCAGCCCCACTTGAAGGCGGGCGCGTGCACCAAAACCATCA
TCGATCAGAGACTCGCATTTGACACCGCTGTGGCATCCGAGTCTAATCTT
GACAGCCTCTTTCATC
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Coding sequence (CDS) from alignment at Contig_100:505250..506815+

>mRNA_10068 ID=mRNA_10068|Name=jgi.p|Trimin1|351829|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=744bp|location=Sequence derived from alignment at Contig_100:505250..506815+ (Tribonema minus UTEX_B_3156 )
ATGCCGGCCGCGCTGCTGCACGCTGCCGCAGCCGCAGCCACCGCAGCAGC
GCTCCGCTACACCCCGCCGCTGTCGTTCCTGGCCCTTCTCGGCGCAGCAG
CGGGCTCACACAGCATGGCCGCTGCCGTGCTGCCGAGCACTGCCGGAGCA
GCAGCTGCAGTAGCCTGTGCTGCCATTGCCGCGCTCGCAGCGCATTTCGG
CTGCGGCGTGCCCGCTGTTCCGGCGCTGCTGGGCGCGGCGGCGTACGCCC
TCGGCGCGTCTCGGCACGCCGCAACAGGCGCGCTCTATGCAGGGCCCAAC
GTCACCTTGAGACGGCTAAGCGGTAGCTCGTGTCACAGCTTCGTGGCGGC
TACTGCAACGCTGCTGCTGGTGCCATTCGCGTGCGTTTGGGATTGGTATT
CGATGGCGCTCTGGCTGGGCAACGGCGATGGTGTTGGGGCTGGAGAGCTG
GCGGCGCTGGTGGCTGCTGGTGGCGCCATGTTCATTGCTCAGAAGCAGCT
GGGCCGACAAGCACACACGCGGCTAGAGACAGGCCGCGCCGCCCTCGCAT
CCCTCGTCATAGCAGCGACAATGCCAGATGTGCACATAGGGGTGTATGCC
TGGTGGGGAGCGTGTGCGGTGGCGCTGGCGAGCGCGCTGCTGCCGCTGCG
CGCATGCGGCGCAGTCACCGATTTTTCGCCATCCCACACATCCAGGCACA
GGCAGCTGCCCCAATCGCCCAGGTCCCCCGCAAAGACGGAATGA
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