mRNA_10065 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154832
Unique NamemRNA_10065
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|154832 vs. uniprot
Match: A0A835ZI88_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI88_9STRA)

HSP 1 Score: 237 bits (604), Expect = 2.990e-79
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 
Query:    1 KVYKAWYPLVGFPRFVRLHEAIIVESSDSTYIQFDLLPKDPTSLSSAFRWFTLQPIPGELRMRPLKYRPENMLYVGASDAGLERMRQFVAAYDDNMVLTSNNCKTFADRFIYEH 342
            KVYKAWYPLVGFPRFVRLHEAIIVESSDSTYIQFDLLPKDPTSLSSAFRWFTLQPIPGELRMRPLKYRPENMLYVGASDAGLERMRQFVAAYDDNMVLTSNNCKTFADRFIYEH
Sbjct:    1 KVYKAWYPLVGFPRFVRLHEAIIVESSDSTYIQFDLLPKDPTSLSSAFRWFTLQPIPGELRMRPLKYRPENMLYVGASDAGLERMRQFVAAYDDNMVLTSNNCKTFADRFIYEH 114
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154832 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZI88_9STRA2.990e-79100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_100contigContig_100:496280..496621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154832|gw1.100.128.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_000390.1
TranscriptId155154
TrackFilteredModels1
ProteinId154832
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154832gene_10065Tribonema minus UTEX_B_3156 geneContig_100 496280..496621 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10065_1exon_10065_1Tribonema minus UTEX_B_3156 exonContig_100 496280..496621 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10065CDS_10065Tribonema minus UTEX_B_3156 CDSContig_100 496280..496621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154832Trimin1|154832|gw1.100.128.1Tribonema minus UTEX_B_3156 polypeptideContig_100 496280..496621 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10065 ID=mRNA_10065|Name=jgi.p|Trimin1|154832|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_100:496280..496621- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAAGTATACAAGGCCTGGTACCCTCTAGTGGGCTTTCCAAGATTCGTCAG
GCTGCATGAAGCCATCATCGTGGAAAGCAGTGACTCCACGTATATTCAGT
TCGATCTGTTGCCCAAGGATCCCACTTCGCTGTCGTCAGCCTTCAGATGG
TTTACACTGCAGCCTATACCCGGTGAGCTGAGGATGCGGCCGCTGAAATA
TCGCCCTGAGAACATGCTGTACGTCGGCGCCAGCGATGCAGGCTTAGAGC
GCATGCGCCAGTTCGTGGCGGCATACGACGACAACATGGTGCTGACATCC
AACAACTGCAAGACCTTTGCCGATAGGTTCATTTATGAGCAT
back to top

protein sequence of jgi.p|Trimin1|154832

>Trimin1|154832|gw1.100.128.1 ID=Trimin1|154832|gw1.100.128.1|Name=jgi.p|Trimin1|154832|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=114bp
KVYKAWYPLVGFPRFVRLHEAIIVESSDSTYIQFDLLPKDPTSLSSAFRW
FTLQPIPGELRMRPLKYRPENMLYVGASDAGLERMRQFVAAYDDNMVLTS
NNCKTFADRFIYEH
back to top

mRNA from alignment at Contig_100:496280..496621-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10065 ID=mRNA_10065|Name=jgi.p|Trimin1|154832|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_100:496280..496621- (Tribonema minus UTEX_B_3156 )
AAAGTATACAAGGCCTGGTACCCTCTAGTGGGCTTTCCAAGATTCGTCAG
GCTGCATGAAGCCATCATCGTGGAAAGCAGTGACTCCACGTATATTCAGT
TCGATCTGTTGCCCAAGGATCCCACTTCGCTGTCGTCAGCCTTCAGATGG
TTTACACTGCAGCCTATACCCGGTGAGCTGAGGATGCGGCCGCTGAAATA
TCGCCCTGAGAACATGCTGTACGTCGGCGCCAGCGATGCAGGCTTAGAGC
GCATGCGCCAGTTCGTGGCGGCATACGACGACAACATGGTGCTGACATCC
AACAACTGCAAGACCTTTGCCGATAGGTTCATTTATGAGCAT
back to top

Coding sequence (CDS) from alignment at Contig_100:496280..496621-

>mRNA_10065 ID=mRNA_10065|Name=jgi.p|Trimin1|154832|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=342bp|location=Sequence derived from alignment at Contig_100:496280..496621- (Tribonema minus UTEX_B_3156 )
AAAGTATACAAGGCCTGGTACCCTCTAGTGGGCTTTCCAAGATTCGTCAG
GCTGCATGAAGCCATCATCGTGGAAAGCAGTGACTCCACGTATATTCAGT
TCGATCTGTTGCCCAAGGATCCCACTTCGCTGTCGTCAGCCTTCAGATGG
TTTACACTGCAGCCTATACCCGGTGAGCTGAGGATGCGGCCGCTGAAATA
TCGCCCTGAGAACATGCTGTACGTCGGCGCCAGCGATGCAGGCTTAGAGC
GCATGCGCCAGTTCGTGGCGGCATACGACGACAACATGGTGCTGACATCC
AACAACTGCAAGACCTTTGCCGATAGGTTCATTTATGAGCAT
back to top