mRNA_10004 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173106
Unique NamemRNA_10004
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|173106 vs. uniprot
Match: A0A835ZI52_9STRA (Elongation of fatty acids protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI52_9STRA)

HSP 1 Score: 625 bits (1613), Expect = 5.270e-226
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 1 
Query:    1 MAQLRKVSPTYPVTVCIIYLIGVYLGRRAMRNRKAFDLRGPLVVWNLALAVFSLWGALRTVPHVFYVLYKEGYTYTIIADGRDWCGGGAVGVWALWFVYSKTPELGDTVFIILRKKPLIFLHWYHHVTVLLYCWHSYYYQEAYGLYFAAMNYSVHAVMYLYYALAAVKIRLCKPYYITAMQISQMFMGIFVCGSAWYYYEIKGHNKYMHKGNLWAGAIMYSSYAALFLQYFVGRFVRKLFKSDKGKGLAAVKANGKGDALAASTEGSGQSANGNHANDLHANGNGVQTNGAYANXNGTHXXXXGAPHXXXXXXXXXXXGFAKSLKGE 981
            MAQLRKVSPTYPVTVCIIYLIGVYLGRRAMRNRKAFDLRGPLVVWNLALAVFSLWGALRTVPHVFYVLYKEGYTYTIIADGRDWCGGGAVGVWALWFVYSKTPELGDTVFIILRKKPLIFLHWYHHVTVLLYCWHSYYYQEAYGLYFAAMNYSVHAVMYLYYALAAVKIRLCKPYYITAMQISQMFMGIFVCGSAWYYYEIKGHNKYMHKGNLWAGAIMYSSYAALFLQYFVGRFVRKLFKSDKGKGLAAVKANGKGDALAASTEGSGQSANGNHANDLHANGNGVQTNGAYANXNGTHXXXXGAPHXXXXXXXXXXXGFAKSLKGE
Sbjct:    1 MAQLRKVSPTYPVTVCIIYLIGVYLGRRAMRNRKAFDLRGPLVVWNLALAVFSLWGALRTVPHVFYVLYKEGYTYTIIADGRDWCGGGAVGVWALWFVYSKTPELGDTVFIILRKKPLIFLHWYHHVTVLLYCWHSYYYQEAYGLYFAAMNYSVHAVMYLYYALAAVKIRLCKPYYITAMQISQMFMGIFVCGSAWYYYEIKGHNKYMHKGNLWAGAIMYSSYAALFLQYFVGRFVRKLFKSDKGKGLAAVKANGKGDALAASTEGSGQSANGNHANDLHANGNGVQTNGAYANXNGTHXXXXGAPHXXXXXXXXXXXGFAKSLKGE 327
[Close]
BLAST of jgi.p|Trimin1|173106 vs. uniprot
Match: A0A836CLW9_9STRA (Elongation of fatty acids protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLW9_9STRA)

HSP 1 Score: 344 bits (882), Expect = 1.320e-115
Identity = 170/262 (64.89%), Postives = 204/262 (77.86%), Query Frame = 1 
Query:    1 MAQLRKVSPTYPVTVCIIYLIGVYLGRRAMRNRKAFDLRGPLVVWNLALAVFSLWGALRTVPHVFYVLYKEGYTYTIIADGRDWCGGGAVGVWALWFVYSKTPELGDTVFIILRKKPLIFLHWYHHVTVLLYCWHSYYYQEAYGLYFAAMNYSVHAVMYLYYALAAVKIRLCKPYYITAMQISQMFMGIFVCGSAWYYYEIKGHNKYMHKGNLWAGAIMYSSYAALFLQYFVGRFVRKLFKSDKGKGLAAVKANGKGDALAA 786
            M  LR+ SP  P+ +C +YL+  YLG   M+NRKA+ L   L++WN ALA+FSL GALRTVPH+  V+  +GY YTI   GRDW GGGAVG WA  FV+SK PELGDTVFI+LRK+PLIFLHWYHHVTVLLYCWHSYY + AYGLYFAAMNYSVHAVMYLYYALAA++IRLCKPYY+T +QISQMF+GI VC S W YY+ KG+ +++ +GNLWAGAIMY+SYA LFLQY + RF++K+   + G    AV  NG G   AA
Sbjct:    1 MVFLREWSPWGPIGICAVYLLFCYLGTLYMKNRKAYGLNRALMLWNFALAMFSLMGALRTVPHLANVIALKGYKYTITEQGRDWVGGGAVGFWAQMFVFSKIPELGDTVFIVLRKRPLIFLHWYHHVTVLLYCWHSYYNEAAYGLYFAAMNYSVHAVMYLYYALAALRIRLCKPYYVTTLQISQMFVGIAVCCSCWIYYK-KGYGEHIKEGNLWAGAIMYASYAFLFLQYAISRFIKKVMSKEDG----AVTMNGNGRKAAA 257
[Close]
BLAST of jgi.p|Trimin1|173106 vs. uniprot
Match: A0A6H5KTN4_9PHAE (Elongation of fatty acids protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTN4_9PHAE)

HSP 1 Score: 293 bits (751), Expect = 7.690e-95
Identity = 144/243 (59.26%), Postives = 173/243 (71.19%), Query Frame = 1 
Query:   13 RKVSPTYPVTVCIIYLIGVYLGRRAMRNRKAFDLRGPLVVWNLALAVFSLWGALRTVPHVFYVLYKEGYTYTIIADGRDWCGGGAVGVWALWFVYSKTPELGDTVFIILRKKPLIFLHWYHHVTVLLYCWHSYYYQEAYGLYFAAMNYSVHAVMYLYYALAAVKIRLCKPYYITAMQISQMFMGIFVCGSAWYYYEIKGHNKYMHKGNLWAGAIMYSSYAALFLQYFVGRFVRKLFKSDKGKG 741
            R  SP  P+ VC+ YL   Y+G + M NRK FDLR PL+ WN  L+ FS  G +RTVPH+  +LY  G+ YTI A    W G GAVG+W   FV+SK PELGDT+F++LRKKPLIFLHWYHHVTVLLYCWHSY+ Q  YGLYF +MNY+VHA+MYLYY LA ++IRLCKPYYIT MQISQM +GI VC +  YY  + G  K++   N  AG +MY SY  LFLQY +GRF+ K  KS   KG
Sbjct:   58 RDNSPWLPILVCMGYLAFCYVGPKVMANRKPFDLRRPLIAWNFMLSAFSFVGMMRTVPHLIQILYVYGFKYTICAKPTMWYGSGAVGMWTQAFVFSKIPELGDTIFVVLRKKPLIFLHWYHHVTVLLYCWHSYFEQTTYGLYFISMNYTVHALMYLYYGLAGMRIRLCKPYYITTMQISQMVVGIAVCVAGGYYMAM-GETKFISMPNFQAGVLMYFSYMLLFLQYALGRFLPKAGKSKMSKG 299
[Close]
BLAST of jgi.p|Trimin1|173106 vs. uniprot
Match: D8LFZ1_ECTSI (Elongation of fatty acids protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFZ1_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 1.830e-91
Identity = 138/229 (60.26%), Postives = 166/229 (72.49%), Query Frame = 1 
Query:   55 YLIGVYLGRRAMRNRKAFDLRGPLVVWNLALAVFSLWGALRTVPHVFYVLYKEGYTYTIIADGRDWCGGGAVGVWALWFVYSKTPELGDTVFIILRKKPLIFLHWYHHVTVLLYCWHSYYYQEAYGLYFAAMNYSVHAVMYLYYALAAVKIRLCKPYYITAMQISQMFMGIFVCGSAWYYYEIKGHNKYMHKGNLWAGAIMYSSYAALFLQYFVGRFVRKLFKSDKGKG 741
            YL   Y+G + M NRK FDLR PL+ WN  L+ FS  G +RTVPH+  +LY  G+ YTI A    W G GAVG+W   FV+SK PELGDT+F++LRKKPLIFLHWYHHVTVLLYCWHSY+ Q  YGLYF +MNY+VHA+MYLYY LA ++IRLCKPYYIT MQISQM +GI VC +  YY  + G  K++ + N  AG +MY SY  LFLQY +GRF+ K  KS   KG
Sbjct:    3 YLAFCYVGPKVMANRKPFDLRRPLIAWNFLLSAFSFVGMMRTVPHLVQILYVYGFKYTICAKPTMWYGSGAVGMWTQAFVFSKIPELGDTIFVVLRKKPLIFLHWYHHVTVLLYCWHSYFEQTTYGLYFISMNYTVHALMYLYYGLAGMRIRLCKPYYITTMQISQMVVGIAVCVAGGYYMAM-GETKFISRPNFQAGVLMYFSYMLLFLQYALGRFLPKAGKSKVSKG 230
[Close]
BLAST of jgi.p|Trimin1|173106 vs. uniprot
Match: A0A7S4C8Y4_9EUGL (Elongation of fatty acids protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C8Y4_9EUGL)

HSP 1 Score: 232 bits (591), Expect = 3.270e-71
Identity = 114/232 (49.14%), Postives = 157/232 (67.67%), Query Frame = 1 
Query:   25 PTYPVTVCIIYLIGVYLGRRAMRNRKAFDLRGPLVVWNLALAVFSLWGALRTVPHVFYVLYKEGYTYTIIADGRDWCGGGAVGVWALWFVYSKTPELGDTVFIILRKKPLIFLHWYHHVTVLLYCWHSYYYQEAYGLYFAAMNYSVHAVMYLYYAL--AAVKIRLCKPYYITAMQISQMFMGIFVCGSAWYYYEIKGHNKYMHKGNLWAGAIMYSSYAALFLQYFVGRFVRK 714
            P  P+ VC +Y++ V+ GR+ M N+K F LR  L++WN +L++FS+ GA+RTVPH+ Y+L  E +  T+        G GA G W   F+ SK PELGDTVFI+L+KKPL+FLHWYHHVTVLL+CWHSY  + A GLYF +MNYSVH +MY YYAL  A V ++      +T +QI+QM +G+ V   +WY   + G+       NL+AGA+MYSSY  LF+ +FV +++ K
Sbjct:   60 PLLPIIVCTLYVVLVFAGRKIMENKKPFGLRPLLILWNGSLSLFSIIGAIRTVPHLLYLLSTESFADTMCVSPVGHWGVGATGFWVQMFILSKFPELGDTVFIVLKKKPLLFLHWYHHVTVLLFCWHSYVTESASGLYFVSMNYSVHGIMYGYYALMTARVPMKWFPSELLTLLQIAQMVVGVVVVSYSWYSASLPGYTCSNDMNNLYAGAVMYSSYFLLFVHFFVDKYILK 291
[Close]
BLAST of jgi.p|Trimin1|173106 vs. uniprot
Match: A0A1W0A5I0_9STRA (Elongation of fatty acids protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5I0_9STRA)

HSP 1 Score: 219 bits (558), Expect = 1.580e-66
Identity = 110/228 (48.25%), Postives = 148/228 (64.91%), Query Frame = 1 
Query:   22 SPTYPVTVCIIYLIGVYLGRRAMRNRKAFDLRGPLVVWNLALAVFSLWGALRTVPHVFYVLYKEGYTYTIIADGRDWCGGGAVGVWALWFVYSKTPELGDTVFIILRKKPLIFLHWYHHVTVLLYCWHSYYYQEAYGLYFAAMNYSVHAVMYLYYALAAVKIRLCKPYYITAMQISQMFMGIFVCGSAWYYYEIKGHNKYMHKGNLWAGAIMYSSYAALFLQYFVGRF 705
            S  Y V +C +Y I  Y GR  M NR  FDL+  L  WNL LA FS  GA+RT P + + +Y+ G  ++I ++  D  G G VG+W   F++SK PEL DT FI++RKKPLIFLHWYHH+TVL++CWH++  + A GLYF AMNYSVHA+MY YY L A+  R      +T +Q+SQM +G+ VC  +  Y   +G   Y+   NL  G +MYSSY  LFL++F+ R+
Sbjct:   37 SMQYAVALCALYCILCYSGRHIMANRSPFDLKWALAGWNLLLATFSFCGAVRTAPFLIHSIYERGLYHSICSEATDHYGNGPVGLWVALFIFSKVPELIDTFFIVVRKKPLIFLHWYHHITVLMFCWHAFAVRSASGLYFVAMNYSVHAIMYFYYFLTAIGYRPQWALMVTIVQLSQMVVGVAVCTMSVLYIR-QGDACYVDHSNLKWGILMYSSYFILFLKFFIERY 263
[Close]
BLAST of jgi.p|Trimin1|173106 vs. uniprot
Match: W4FNI5_9STRA (Elongation of fatty acids protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FNI5_9STRA)

HSP 1 Score: 218 bits (554), Expect = 8.830e-66
Identity = 107/238 (44.96%), Postives = 153/238 (64.29%), Query Frame = 1 
Query:    4 AQLRKVSPTYPVTVCIIYLIGVYLGRRAMRNRKAFDLRGPLVVWNLALAVFSLWGALRTVPHVFYVLYKEGYTYTIIADGRDWCGGGAVGVWALWFVYSKTPELGDTVFIILRKKPLIFLHWYHHVTVLLYCWHSYYYQEAYGLYFAAMNYSVHAVMYLYYALAAVKIRLCKPYYITAMQISQMFMGIFVCGSAWYYYEIKGHNK----YMHKGNLWAGAIMYSSYAALFLQYFVGRF 705
            AQ  + +    V +C  Y    Y G++ MR+R+AFD+   L +WNL+L+ FS  GALRTVP + + +Y  G  +++ +D     G G VG+W   F++SK PEL DT F+++RKKPL FLHWYHH+TVLL+CWH+Y  + + GLYF AMNY+VHAVMY+YY L AV  R    Y +T +Q+SQM +G+ VC ++  Y            + ++ NL  G +MY+SY ALFL +F+ R+
Sbjct:   41 AQFCRSTMHLCVALCAAYCFSCYFGKQIMRSREAFDMTPVLALWNLSLSTFSACGALRTVPFLLHSIYHHGVYHSVCSDATAHYGNGPVGLWVSMFIFSKIPELFDTFFVVIRKKPLRFLHWYHHITVLLFCWHAYSVRSSSGLYFVAMNYTVHAVMYMYYFLTAVGYRPRWAYLVTTLQLSQMVVGVAVCAASVIYLSTSSXXXTTTCHANRTNLQYGIVMYASYFALFLHFFIQRY 278
[Close]
BLAST of jgi.p|Trimin1|173106 vs. uniprot
Match: A0A0P1A7Q9_PLAHL (Elongation of fatty acids protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A7Q9_PLAHL)

HSP 1 Score: 217 bits (552), Expect = 1.470e-65
Identity = 119/247 (48.18%), Postives = 156/247 (63.16%), Query Frame = 1 
Query:   16 KVSPTYPVTVCIIYLIGVYLGRRAMRNRKAFDLRGPLVVWNLALAVFSLWGALRTVPHVFYVLYKEGYTYTIIADGRDWCGGGAVGVWALWFVYSKTPELGDTVFIILRKKPLIFLHWYHHVTVLLYCWHSYYYQEAYGLYFAAMNYSVHAVMYLYYALAAVKIRLCKPYYITAMQISQMFMGIFVCGSAWYYYEIKGHNKYMHKGNLWAGAIMYSSYAALFLQYFVGRFVRKLFKSDKGKGLAAVK 756
            K S    V +C++Y    +LGRR MR+ K FDL+ PL +WNL LA FS  GA RTVP +   +Y+ G  +++ A      G G V +W + F++SK PEL DT FI+LRKKPLIFLHWYHHVTVLL+CWH++  + A G+YF AMNYSVHA+MY YY L A   R      +T  Q+SQM +G+ VCG   YY + +G    +   NL    IMYSSY ALFL++F+ R+   LF + K   + A K
Sbjct:   38 KESLPMAVMLCVVYCAMCFLGRRIMRDIKPFDLKVPLALWNLGLATFSAIGASRTVPFLINTVYRRGVYHSVCAPPTPHYGHGPVALWVMLFIFSKVPELLDTAFIVLRKKPLIFLHWYHHVTVLLFCWHAFGTRSASGIYFVAMNYSVHAIMYFYYFLTACGYRPRWARLVTIFQLSQMGIGVAVCGLNVYYMK-QGVACSVDPENLKWAIIMYSSYFALFLKFFIERY---LFSTKKPATIVAKK 280
[Close]
BLAST of jgi.p|Trimin1|173106 vs. uniprot
Match: H3GJY2_PHYRM (Elongation of fatty acids protein n=25 Tax=Phytophthora TaxID=4783 RepID=H3GJY2_PHYRM)

HSP 1 Score: 216 bits (551), Expect = 2.140e-65
Identity = 120/247 (48.58%), Postives = 154/247 (62.35%), Query Frame = 1 
Query:   16 KVSPTYPVTVCIIYLIGVYLGRRAMRNRKAFDLRGPLVVWNLALAVFSLWGALRTVPHVFYVLYKEGYTYTIIADGRDWCGGGAVGVWALWFVYSKTPELGDTVFIILRKKPLIFLHWYHHVTVLLYCWHSYYYQEAYGLYFAAMNYSVHAVMYLYYALAAVKIRLCKPYYITAMQISQMFMGIFVCGSAWYYYEIKGHNKYMHKGNLWAGAIMYSSYAALFLQYFVGRFVRKLFKSDKGKGLAAVK 756
            K S    V +C  Y +  + GRR MR+ K F+L+ PL +WNLALA FS  GA RT P +   +Y+ G  +++ A      G G V +W + F++SK PEL DT FI+LRKKPLIFLHWYHH+TVLL+CWH++    A GLYF AMNYSVHA+MY YY L A   R      +T  Q+SQM +G+ VC    YY + +G    +   NL  G IMYSSY ALFL++FV R+   L +S K   LAA K
Sbjct:   39 KESLPAAVALCAAYCVLCFAGRRVMRDLKPFNLKVPLALWNLALATFSAIGASRTAPFLLNTIYRRGVYHSVCAPPTPHYGHGPVALWVMLFIFSKVPELVDTAFIVLRKKPLIFLHWYHHITVLLFCWHAFGTLSASGLYFVAMNYSVHAIMYFYYFLTACGFRPRWARLVTIFQLSQMGVGVAVCSLNVYYMK-QGATCSVDPDNLKWGIIMYSSYFALFLKFFVERY---LLRSAKKPALAAKK 281
[Close]
BLAST of jgi.p|Trimin1|173106 vs. uniprot
Match: A0A484DWX2_BRELC (Elongation of fatty acids protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DWX2_BRELC)

HSP 1 Score: 216 bits (550), Expect = 2.680e-65
Identity = 120/245 (48.98%), Postives = 156/245 (63.67%), Query Frame = 1 
Query:   22 SPTYPVTVCIIYLIGVYLGRRAMRNRKAFDLRGPLVVWNLALAVFSLWGALRTVPHVFYVLYKEGYTYTIIADGRDWCGGGAVGVWALWFVYSKTPELGDTVFIILRKKPLIFLHWYHHVTVLLYCWHSYYYQEAYGLYFAAMNYSVHAVMYLYYALAAVKIRLCKPYYITAMQISQMFMGIFVCGSAWYYYEIKGHNKYMHKGNLWAGAIMYSSYAALFLQYFVGRFVRKLFKSDKGKGLAAVK 756
            S +  V +C +Y    ++GRR MR+ K F L+GPL +WNL LAVFS  GA RTVP +   +YK G   ++ A      G G   +W + F++SK PEL DTVFI+LRKKPLIFLHWYHH+TVLL+CWH++  + A G+YF AMNYSVHAVMY YY L A   R      +T  Q+SQM +G+ VCG   YY +  G+   +   +L  G IMYSSY ALFL++FV R+   L +S K   +A  K
Sbjct:   36 SMSMAVLICGVYCALCFIGRRIMRDFKPFQLKGPLALWNLGLAVFSAIGASRTVPFLLINIYKYGIYDSVCAPPTPNYGRGPAALWIVLFIFSKVPELADTVFIVLRKKPLIFLHWYHHITVLLFCWHAFGTRSASGIYFIAMNYSVHAVMYFYYFLTACGYRPRWARLVTIFQLSQMGVGVAVCGLNVYYMK-HGYACSVDPESLKWGIIMYSSYFALFLKFFVERY---LLRSAKKAAVAPAK 276
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173106 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZI52_9STRA5.270e-226100.00Elongation of fatty acids protein n=1 Tax=Tribonem... [more]
A0A836CLW9_9STRA1.320e-11564.89Elongation of fatty acids protein n=1 Tax=Tribonem... [more]
A0A6H5KTN4_9PHAE7.690e-9559.26Elongation of fatty acids protein n=1 Tax=Ectocarp... [more]
D8LFZ1_ECTSI1.830e-9160.26Elongation of fatty acids protein n=1 Tax=Ectocarp... [more]
A0A7S4C8Y4_9EUGL3.270e-7149.14Elongation of fatty acids protein n=1 Tax=Eutrepti... [more]
A0A1W0A5I0_9STRA1.580e-6648.25Elongation of fatty acids protein n=1 Tax=Thrausto... [more]
W4FNI5_9STRA8.830e-6644.96Elongation of fatty acids protein n=3 Tax=Aphanomy... [more]
A0A0P1A7Q9_PLAHL1.470e-6548.18Elongation of fatty acids protein n=1 Tax=Plasmopa... [more]
H3GJY2_PHYRM2.140e-6548.58Elongation of fatty acids protein n=25 Tax=Phytoph... [more]
A0A484DWX2_BRELC2.680e-6548.98Elongation of fatty acids protein n=1 Tax=Bremia l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_100contigContig_100:91227..96136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173106|e_gw1.100.135.1
BRITEko00000,ko00001,ko00002,ko01000,ko01004
KEGG rclassRC00004,RC00039,RC02728,RC02888,RC02997
KEGG ReactionR07758,R07762,R09419,R10825
KEGG ModuleM00415
KEGG Pathwayko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG koko:K10203
EC2.3.1.199
Descriptionvery-long-chain 3-ketoacyl-CoA synthase activity
COG categoryI
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3071@1|root,KOG3072@2759|Eukaryota
Evalue3e-92
Seed ortholog2880.D8LFZ1
Hectar predicted targeting categorysignal anchor
TranscriptId173428
TrackFilteredModels1
ProteinId173106
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173106gene_10004Tribonema minus UTEX_B_3156 geneContig_100 91227..96136 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173106Trimin1|173106|e_gw1.100.135.1Tribonema minus UTEX_B_3156 polypeptideContig_100 91227..96136 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10004_7exon_10004_7Tribonema minus UTEX_B_3156 exonContig_100 91227..91545 -
exon_10004_6exon_10004_6Tribonema minus UTEX_B_3156 exonContig_100 92630..92688 -
exon_10004_5exon_10004_5Tribonema minus UTEX_B_3156 exonContig_100 93132..93194 -
exon_10004_4exon_10004_4Tribonema minus UTEX_B_3156 exonContig_100 93700..93835 -
exon_10004_3exon_10004_3Tribonema minus UTEX_B_3156 exonContig_100 95106..95227 -
exon_10004_2exon_10004_2Tribonema minus UTEX_B_3156 exonContig_100 95734..95901 -
exon_10004_1exon_10004_1Tribonema minus UTEX_B_3156 exonContig_100 96020..96136 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10004CDS_10004Tribonema minus UTEX_B_3156 CDSContig_100 96020..96136 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10004 ID=mRNA_10004|Name=jgi.p|Trimin1|173106|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=984bp|location=Sequence derived from alignment at Contig_100:91227..96136- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCAGCTCCGGAAGGTCTCGCCCACGTATCCGGTGACCGTGTGCAT
CATCTACCTCATAGGCGTCTATCTGGGGAGGCGAGCGATGCGCAATCGCA
AAGCTTTCGACCTAAGGGGCCCTCTGGTGGTCTGGAATCTGGCGCTGGCG
GTCTTCAGCCTCTGGGGAGCGCTGCGGACGGTACCACACGTGTTCTACGT
GCTGTACAAGGAGGGATACACATACACCATCATTGCTGACGGCAGGGACT
GGTGTGGTGGTGGGGCAGTGGGGGTTTGGGCTCTGTGGTTTGTCTACTCC
AAGACGCCGGAATTAGGGGACACGGTGTTCATCATATTGCGCAAGAAGCC
TCTCATTTTCCTGCACTGGTACCACCATGTAACAGTGCTGCTTTACTGCT
GGCACAGCTACTACTATCAGGAAGCCTATGGGCTGTACTTTGCTGCCATG
AACTACTCCGTTCACGCGGTCATGTACCTCTACTACGCGCTGGCAGCAGT
GAAGATCAGGCTGTGCAAGCCCTATTACATCACCGCCATGCAGATTTCGC
AGATGTTTATGGGCATCTTTGTGTGTGGGTCTGCCTGGTACTACTACGAG
ATCAAGGGCCACAACAAGTACATGCACAAGGGGAATTTGTGGGCGGGAGC
GATCATGTATTCAAGCTACGCAGCCCTGTTTCTGCAGTACTTCGTGGGCA
GGTTTGTCAGGAAACTGTTCAAGTCGGACAAGGGCAAAGGGCTCGCTGCC
GTTAAAGCCAACGGCAAAGGAGACGCGTTGGCAGCCAGCACAGAGGGGTC
TGGTCAGTCAGCAAACGGCAATCATGCGAATGACTTGCATGCCAATGGCA
ATGGCGTGCAGACCAATGGCGCGTATGCCAATGGCAATGGCACACACGCC
AATGCTAATGGCGCACCACATGCCAACGGCAACGGCAACGGCTTGTACAC
CAACGGTTTTGCCAAAAGCCTCAAGGGCGAGTGA
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protein sequence of jgi.p|Trimin1|173106

>Trimin1|173106|e_gw1.100.135.1 ID=Trimin1|173106|e_gw1.100.135.1|Name=jgi.p|Trimin1|173106|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=328bp
MAQLRKVSPTYPVTVCIIYLIGVYLGRRAMRNRKAFDLRGPLVVWNLALA
VFSLWGALRTVPHVFYVLYKEGYTYTIIADGRDWCGGGAVGVWALWFVYS
KTPELGDTVFIILRKKPLIFLHWYHHVTVLLYCWHSYYYQEAYGLYFAAM
NYSVHAVMYLYYALAAVKIRLCKPYYITAMQISQMFMGIFVCGSAWYYYE
IKGHNKYMHKGNLWAGAIMYSSYAALFLQYFVGRFVRKLFKSDKGKGLAA
VKANGKGDALAASTEGSGQSANGNHANDLHANGNGVQTNGAYANGNGTHA
NANGAPHANGNGNGLYTNGFAKSLKGE*
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mRNA from alignment at Contig_100:91227..96136-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10004 ID=mRNA_10004|Name=jgi.p|Trimin1|173106|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4910bp|location=Sequence derived from alignment at Contig_100:91227..96136- (Tribonema minus UTEX_B_3156 )
ATGGCGCAGCTCCGGAAGGTCTCGCCCACGTATCCGGTGACCGTGTGCAT
CATCTACCTCATAGGCGTCTATCTGGGGAGGCGAGCGATGCGCAATCGCA
AAGCTTTCGACCTAAGGGTGAGCCTGGCCTTGCCGCTGCCAGCACTCAGC
AAGCTATCTGCAGTTCGTATTGCATTACATCTCTGCTAACCGGCGTATCT
TCTTCCTCCACGACTGTGTGCTGTGTTTGAGACAGGGCCCTCTGGTGGTC
TGGAATCTGGCGCTGGCGGTCTTCAGCCTCTGGGGAGCGCTGCGGACGGT
ACCACACGTGTTCTACGTGCTGTACAAGGAGGGATACACATACACCATCA
TTGCTGACGGCAGGGACTGGTGTGGTGGTGGGGCAGTGGGGGTTTGGGCT
CTGGTAAGTCGCCGTTCCGATTACCTAAAAAACCACTGAGTTCACCAGAT
GTTGGCCCTGTTGGCATTGTGTTGAGTAAGCATTTGCATCAGCCACTGTC
ACATCTCAATATACTGGCTAAGGCTCAGAATGATTTCATTTTCGACAGGG
GACATAGGCATTCAGCCAGGGATATGACTAGAGTGCTAAGCATCTCTCTA
CTCTCTACTCGCAGAGGGGACTCTCACTGATGCATCGCCACGTTGTCGTC
TTGCAGCCTCTTATTGGTCCAACATTTCAATCTTGACCGCGCACGATGCA
TCATTTCTTGAGTGGTATGCCACATTGCCATGATGCATTGGTGTAGTTTT
TTCTTTCTTTTTCTAAGAGCACATGGCTGGTCTGTCACCCTTCGAACTCT
TCAGCACTCATTTTCGCTTGTGGCAGTTTCCTATTTCTGAAACCTCACTG
CTGCCCTTGCGCAATTTCTGTCGCACGTGCTTGATGGCTGCTGATTATCG
TTTTTGCAGTGGTTTGTCTACTCCAAGACGCCGGAATTAGGGGACACGGT
GTTCATCATATTGCGCAAGAAGCCTCTCATTTTCCTGCACTGGTACCACC
ATGTAACAGTGCTGCTTTACTGCTGGCACAGGTGAGTGACCTAAGGGAAT
ACTCTGGGAAATCACCAGTCAGAAGCACCTTTGCCCCGCGGTCGAGAGCT
TTAATGACAGCAAATCATAGAATGAAACAGAAAGTTGCATTCAAAACATA
ATGCTTTTTAAGTCTATTACCTCCAACTATATGAAGTCTCATACATTCAT
GGCAAACTCAAACCTCAACCTGCATGCCAGTTTGTGAGTCGTGTAAGTAA
TAATGAATATCAGTGGAGCATTTCGTGCTGCATTCAAACTTGCCTCCATT
GAGGTTGAGTAGTGAGAGCAATTGAGGTGCATACAAAGGGCACTAATTCA
AGTCGGTGATTTTGTGATGGACAAATGCGACACACAGATGCGGCACATGT
AATACACTTTGTAGTGATATTGAGACTGCTGCATCAATGTTGCATCATAG
TCTAATGCTGGTCTTCCCACAATGTACACCCACACGGCTTATCGATGTGT
GCCTGGCCTCTGCCATTGATGCGGTATTGGCGATTGCATTCAAAGACCAG
CATCATCTTTGGTGCTCACAATCACACTTAGTATTGTCTTTTATGTTCAA
AATGTATGCACTCAAGCATTGTTGGATGTGGTCAGGCTCCCGCACTCGAC
CAATGCCATATTGCGGCGCTGTGTTGCTGGCACTCACAGTTACAGCGTAA
TGTAATACACACACATTGAGGTACATTGGCAGTGCACACGCGACTGGTAC
CTCTGGCTCAGTTTGCAAATAAATACTGGAGGCATTTGCAAGTGGATAAA
CCTACAGTCCATCTGCAGCTGCTGATTCAGATTGCAAGCGAATCAATTCA
TTAAAACTGAAAGCCACCTTCTTTCCTGCAGCATCTGCTGGCCTACATAC
TTAAAAGTATTTGTGAGGGTTAGGATTAGGATTGTCTTGATGCCGTGCTC
ATTGCAATCCAAGATGGAGTGATAAGTAATGCTATTCAAAGTTTGGATCA
AAGCAATGCTAGCGAGGTGTTGCCAATGCCCTACACAATAGCTGCACTGT
GTGTACAACGTGCATGCAGGTGAGTATGGTACGACAGGCACTTGATCATC
ATTTGATACAATAGCACTTCTTCATGCCCGGATAGTCGACAAACACCTGA
CCTACGTGCCCCTTCAACTGAAGCATGCATGTAGCTGTGCAACCGAGCGA
ATCGGGAGCCAAGTGGCTTACACAAACTCAACCAACTCACAGTAAGATGC
CTGCAATGCACGGACACCATTGATATTAACACCACACATCCTGCCTCGCA
GCTACTACTATCAGGAAGCCTATGGGCTGTACTTTGCTGCCATGAACTAC
TCCGTTCACGCGGTCATGTACCTCTACTACGCGCTGGCAGCAGTGAAGAT
CAGGCTGTGCAAGCCCTATTACATCACCGCCATGCAGGTGATCCCAAAGT
CTCAACAGCAGCACTTTCCAGTAGCGCTGCGCAGCAAGTGGGGGTTGGGA
TCAGTATAAGACGCCCTGTATTGGTCTTTTTTGTTTTTTACGCATGTTCA
TGTGCATGCGTCGCAGGCCTCTCACCAGCCTCTGGTGAATGGGCGCTGCT
GCGGCCTATCAAACTTGAAGTTGAAATTGAAGTTACAACAAAGTACGCCT
GCGTCCGTTAGCAGGACGAGGCATGGCTCATGCTGCAATGAGCACTGTTG
TAGACGTAGGTCTTGAAGCTCACGAATTTGAACAGCAGGTTTGCCCGCCT
GCGTTGCGCCAGCTTCAACTCACAATGCCACGTTGCTGGAAAGTGCAAAA
TGCATGCACACCAGCATACTGCATTGTGTCGTCCACATGCCCTTTTTAAG
GAGATGTTGCAGGCATGCATGTATGTATGACATTCATCCACGCCAGCCGC
TGAGTGCACGTGCACTTGCGATGATGTGCTGTTTTCTTGCAGATTTCGCA
GATGTTTATGGGCATCTTTGTGTGTGGGTCTGCCTGGTACTACTACGAGA
TCAAGGTGAGTTGGCACCGATATCAATGCTGAACCTACATGCCAGGGCAT
CTTGGAGAGACCATGGACCATGCACGCAGAGTACAGGCTCGGCAGCAATA
CATATCACCTGGTGCTGTATGTGGCCTGGCTCCTCGACTTCGCTGAATGC
TCCCAAAACATGTATATCTGGGCACCTGCAAAGTCCTTCTTACGTAGTGA
CTTGCATTGTATGTACTGCTATCACATTTCAGCTTGCACGCATGACAGCT
TGCAAGTGCACGAAGGCTTGGTTGCCATCAAGATCCTGTATGCCATGCAT
GATTGCTGAGCTTGGCTGCGTGGCTTCACGCAACATCCGGAGCGTCAACC
ACCACTCATGTGATGAAGTTACTGCTGTGGTTCAAAGTGTGTGCCTTACT
GATAACGTTGCTGGCGTGCCCTGCTCGACCTTCATCCTACTATCACAGGG
CCACAACAAGTACATGCACAAGGGGAATTTGTGGGCGGGAGCGATCATGT
ATTCAAGGTGAGCATGTAGCTGCAAAACAGGCTGTAACAATTACACAATG
TCAACATTCACAAATGCTCGTGGACAGAGTGTTACGAACAGGCGCTTTTA
CAGTTGCGATCAGCACGTAGAGGCCTGTCAGTTTTCGCAGTCGGTTTTTG
CAGTCGGTGTGAACAGCACCTCGTGTGAACAGCACCTCCAAGTGACAGAA
CACTGATTTTGGACCCGATGTGGCACAGCAAGAATTTCAAGAATTGCAGA
AGCAAGCAGGGCTCAGTGCTCTACACAGGCCAAGAGATGATTAGCAACAG
GAGTGCTTTGGCAATACTCTTGTACTTGGCTTTATGAAACATTCGCTTGA
GAAAATATCAGTAGTCAAGTATGACGGGACCTGTGGCTGAGGGCAGAGTT
GCGGTTAGTCTCAGTTCACACACGCCACTACATGATTATACTTGTAAGCA
GCAGAACATCAGTCATGGAGTGATGGCGAGTCATGTCTTGCATATGCGCC
GATGCCTGCATTGCCAGGAGCCAATGTGATGATTTGTACAGGTTGATGCC
ATATGCAGAGTCAAGAGGCACGTGATTGAGAGCCGACAGCAAGATGTGAA
TTCATTTCAGACTTGATCATTGTTCACAATGAGAATCTCAACCTCAATAG
CGTATGTGGTACATACAAGTAGTAGTGGTGCTCAACAGCAGCGCGCATCA
GCGCTGAGGAAGCAATTGCTCATTCTCTCCTGCAGTATCGCAAGCTCATG
CACATGATCATGCTCAAGTGGTTGGCATGTACCCAGTCACATGCACTCTC
GCTCTATACACGTGCTCAGCAGCCAACTGCAGCTCCAGCAGATCCTGTTG
TAAGGGATGTATTAACCCGCCACTCTTATGCAGCGCCTATGGAAGGAGCG
CTACATAGCCCTAAGTTTGACCTGAACCCCATATGCAGGATCAAGGCAAC
AGTGGATCACAACATAGAAGTAATGTGTACGCCTACGCCGACCCGGCTAA
CTGCCCTTCCCTGCGTATTTCCTCACATGAACTCTGGTGCTACACTCAAT
ATTTTCCTCTGTTGTTTTCGTGCCATGTGACTGTGCCACAGCTACGCAGC
CCTGTTTCTGCAGTACTTCGTGGGCAGGTTTGTCAGGAAACTGTTCAAGT
CGGACAAGGGCAAAGGGCTCGCTGCCGTTAAAGCCAACGGCAAAGGAGAC
GCGTTGGCAGCCAGCACAGAGGGGTCTGGTCAGTCAGCAAACGGCAATCA
TGCGAATGACTTGCATGCCAATGGCAATGGCGTGCAGACCAATGGCGCGT
ATGCCAATGGCAATGGCACACACGCCAATGCTAATGGCGCACCACATGCC
AACGGCAACGGCAACGGCTTGTACACCAACGGTTTTGCCAAAAGCCTCAA
GGGCGAGTGA
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Coding sequence (CDS) from alignment at Contig_100:91227..96136-

>mRNA_10004 ID=mRNA_10004|Name=jgi.p|Trimin1|173106|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=984bp|location=Sequence derived from alignment at Contig_100:91227..96136- (Tribonema minus UTEX_B_3156 )
ATGGCGCAGCTCCGGAAGGTCTCGCCCACGTATCCGGTGACCGTGTGCAT
CATCTACCTCATAGGCGTCTATCTGGGGAGGCGAGCGATGCGCAATCGCA
AAGCTTTCGACCTAAGGGGCCCTCTGGTGGTCTGGAATCTGGCGCTGGCG
GTCTTCAGCCTCTGGGGAGCGCTGCGGACGGTACCACACGTGTTCTACGT
GCTGTACAAGGAGGGATACACATACACCATCATTGCTGACGGCAGGGACT
GGTGTGGTGGTGGGGCAGTGGGGGTTTGGGCTCTGTGGTTTGTCTACTCC
AAGACGCCGGAATTAGGGGACACGGTGTTCATCATATTGCGCAAGAAGCC
TCTCATTTTCCTGCACTGGTACCACCATGTAACAGTGCTGCTTTACTGCT
GGCACAGCTACTACTATCAGGAAGCCTATGGGCTGTACTTTGCTGCCATG
AACTACTCCGTTCACGCGGTCATGTACCTCTACTACGCGCTGGCAGCAGT
GAAGATCAGGCTGTGCAAGCCCTATTACATCACCGCCATGCAGATTTCGC
AGATGTTTATGGGCATCTTTGTGTGTGGGTCTGCCTGGTACTACTACGAG
ATCAAGGGCCACAACAAGTACATGCACAAGGGGAATTTGTGGGCGGGAGC
GATCATGTATTCAAGCTACGCAGCCCTGTTTCTGCAGTACTTCGTGGGCA
GGTTTGTCAGGAAACTGTTCAAGTCGGACAAGGGCAAAGGGCTCGCTGCC
GTTAAAGCCAACGGCAAAGGAGACGCGTTGGCAGCCAGCACAGAGGGGTC
TGGTCAGTCAGCAAACGGCAATCATGCGAATGACTTGCATGCCAATGGCA
ATGGCGTGCAGACCAATGGCGCGTATGCCAATGGCAATGGCACACACGCC
AATGCTAATGGCGCACCACATGCCAACGGCAACGGCAACGGCTTGTACAC
CAACGGTTTTGCCAAAAGCCTCAAGGGCGAGTGA
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