mRNA_10000 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173139
Unique NamemRNA_10000
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|173139 vs. uniprot
Match: A0A835ZPP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPP5_9STRA)

HSP 1 Score: 332 bits (852), Expect = 5.290e-115
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1 
Query:    1 MSDEPAGEKKPRTRMNAEELLEETSQAMEKAVAFLESNGLHAASVENVRHLTSALAWSDALHLTQSLGFTMPHIDHDAFIVMLLDTWECVAQMKLNSRRACYRKVRVLEADQKTDPEVLAKWLADRARVDKESAATNLSYIKMRQILRAGEPAGNTAGGGAATTATQAGVASAAVAG 531
            MSDEPAGEKKPRTRMNAEELLEETSQAMEKAVAFLESNGLHAASVENVRHLTSALAWSDALHLTQSLGFTMPHIDHDAFIVMLLDTWECVAQMKLNSRRACYRKVRVLEADQKTDPEVLAKWLADRARVDKESAATNLSYIKMRQILRAGEPAGNTAGGGAATTATQAGVASAAVAG
Sbjct:    1 MSDEPAGEKKPRTRMNAEELLEETSQAMEKAVAFLESNGLHAASVENVRHLTSALAWSDALHLTQSLGFTMPHIDHDAFIVMLLDTWECVAQMKLNSRRACYRKVRVLEADQKTDPEVLAKWLADRARVDKESAATNLSYIKMRQILRAGEPAGNTAGGGAATTATQAGVASAAVAG 177
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BLAST of jgi.p|Trimin1|173139 vs. uniprot
Match: D8LNR5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR5_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 5.880e-34
Identity = 65/148 (43.92%), Postives = 99/148 (66.89%), Query Frame = 1 
Query:    1 MSDEPAGEKKPRTRMNAEELLEETSQAMEKAVAFLESNGLHAASVENVRHLTSALAWSDALHLTQSLGFTMPHIDHDAFIVMLLDTWECVAQMKLNSRRACYRKVRVLEADQKTDPEVLAKWLADRARVDKESAATNLSYIKMRQILR 444
            M+DE   ++KPR R+ A+ELLEET  A  K V  LE NGL A S+E++  LT    +  +L+L + LG +MP + H+  +V+LLD W+CV     ++R+  YRKVR+LEAD KT+P+ L +W  +R + ++ESA  N++Y+ MR+I +
Sbjct:    1 MADE---DRKPRHRLGADELLEETQGASAKIVNLLEVNGLAAESIEHLTSLTKGGDFMGSLNLARRLGLSMPDVPHNDLVVLLLDAWDCVVYKTGHTRKQMYRKVRLLEADNKTEPDTLDRWKGERDKAERESAKANVAYVTMREIAK 145
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173139 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZPP5_9STRA5.290e-115100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LNR5_ECTSI5.880e-3443.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_100contigContig_100:69790..70618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173139|e_gw1.100.112.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_006120.1
TranscriptId173461
TrackFilteredModels1
ProteinId173139
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173139gene_10000Tribonema minus UTEX_B_3156 geneContig_100 69790..70618 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10000_1exon_10000_1Tribonema minus UTEX_B_3156 exonContig_100 69790..70082 +
exon_10000_2exon_10000_2Tribonema minus UTEX_B_3156 exonContig_100 70378..70618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10000CDS_10000Tribonema minus UTEX_B_3156 CDSContig_100 69790..70082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173139Trimin1|173139|e_gw1.100.112.1Tribonema minus UTEX_B_3156 polypeptideContig_100 69790..70618 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10000 ID=mRNA_10000|Name=jgi.p|Trimin1|173139|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=534bp|location=Sequence derived from alignment at Contig_100:69790..70618+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGATGAACCAGCAGGAGAGAAGAAGCCGCGCACGCGCATGAACGC
GGAGGAGCTGCTGGAAGAAACATCCCAGGCGATGGAGAAGGCGGTAGCTT
TCCTGGAGTCGAATGGCCTGCATGCAGCGTCCGTCGAGAACGTCCGGCAC
CTGACGTCTGCTTTGGCATGGTCTGATGCGTTACATCTCACCCAGAGTCT
GGGATTTACGATGCCCCATATAGATCACGACGCATTCATCGTCATGCTGC
TCGACACATGGGAGTGCGTGGCGCAGATGAAACTCAATTCACGACGAGCA
TGCTACCGCAAAGTGCGAGTGCTGGAGGCCGACCAAAAAACGGACCCAGA
GGTATTGGCCAAGTGGCTTGCTGACAGGGCGCGCGTAGACAAGGAGAGCG
CAGCCACCAACCTCAGCTATATCAAAATGCGGCAGATATTGCGCGCTGGC
GAGCCAGCTGGAAACACTGCTGGTGGTGGCGCTGCCACGACAGCAACGCA
GGCGGGAGTGGCTAGTGCTGCAGTTGCTGGATGA
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protein sequence of jgi.p|Trimin1|173139

>Trimin1|173139|e_gw1.100.112.1 ID=Trimin1|173139|e_gw1.100.112.1|Name=jgi.p|Trimin1|173139|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=178bp
MSDEPAGEKKPRTRMNAEELLEETSQAMEKAVAFLESNGLHAASVENVRH
LTSALAWSDALHLTQSLGFTMPHIDHDAFIVMLLDTWECVAQMKLNSRRA
CYRKVRVLEADQKTDPEVLAKWLADRARVDKESAATNLSYIKMRQILRAG
EPAGNTAGGGAATTATQAGVASAAVAG*
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mRNA from alignment at Contig_100:69790..70618+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10000 ID=mRNA_10000|Name=jgi.p|Trimin1|173139|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=829bp|location=Sequence derived from alignment at Contig_100:69790..70618+ (Tribonema minus UTEX_B_3156 )
ATGAGTGATGAACCAGCAGGAGAGAAGAAGCCGCGCACGCGCATGAACGC
GGAGGAGCTGCTGGAAGAAACATCCCAGGCGATGGAGAAGGCGGTAGCTT
TCCTGGAGTCGAATGGCCTGCATGCAGCGTCCGTCGAGAACGTCCGGCAC
CTGACGTCTGCTTTGGCATGGTCTGATGCGTTACATCTCACCCAGAGTCT
GGGATTTACGATGCCCCATATAGATCACGACGCATTCATCGTCATGCTGC
TCGACACATGGGAGTGCGTGGCGCAGATGAAACTCAATTCACGGTGAGAC
AGAGCTTCAGAGCTCTGTTTAATGAGCTGATTGTCACATTCGCACCATTT
TAGCAAACAAAAGACACTTCAATGTGCCTGCTGCAATCGTCGCCCGCTGC
AGAGAATGCAAGGCCCTACTGCTTAGCCAAGATTTACAGTAACCAGCACT
TTTTGCAGAGGGTGCGGTACATGGCATGTGTTGGTGCATATTCCAGATCA
ACAAGCAGCCCACTGGCTGCACAGCAGCCGCCTCACACAAAGAACATGCA
CCGTTTGTTTTGCCTGCACTGGCCGCTCTGTCCTGCAGACGAGCATGCTA
CCGCAAAGTGCGAGTGCTGGAGGCCGACCAAAAAACGGACCCAGAGGTAT
TGGCCAAGTGGCTTGCTGACAGGGCGCGCGTAGACAAGGAGAGCGCAGCC
ACCAACCTCAGCTATATCAAAATGCGGCAGATATTGCGCGCTGGCGAGCC
AGCTGGAAACACTGCTGGTGGTGGCGCTGCCACGACAGCAACGCAGGCGG
GAGTGGCTAGTGCTGCAGTTGCTGGATGA
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Coding sequence (CDS) from alignment at Contig_100:69790..70618+

>mRNA_10000 ID=mRNA_10000|Name=jgi.p|Trimin1|173139|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=534bp|location=Sequence derived from alignment at Contig_100:69790..70618+ (Tribonema minus UTEX_B_3156 )
ATGAGTGATGAACCAGCAGGAGAGAAGAAGCCGCGCACGCGCATGAACGC
GGAGGAGCTGCTGGAAGAAACATCCCAGGCGATGGAGAAGGCGGTAGCTT
TCCTGGAGTCGAATGGCCTGCATGCAGCGTCCGTCGAGAACGTCCGGCAC
CTGACGTCTGCTTTGGCATGGTCTGATGCGTTACATCTCACCCAGAGTCT
GGGATTTACGATGCCCCATATAGATCACGACGCATTCATCGTCATGCTGC
TCGACACATGGGAGTGCGTGGCGCAGATGAAACTCAATTCACGACGAGCA
TGCTACCGCAAAGTGCGAGTGCTGGAGGCCGACCAAAAAACGGACCCAGA
GGTATTGGCCAAGTGGCTTGCTGACAGGGCGCGCGTAGACAAGGAGAGCG
CAGCCACCAACCTCAGCTATATCAAAATGCGGCAGATATTGCGCGCTGGC
GAGCCAGCTGGAAACACTGCTGGTGGTGGCGCTGCCACGACAGCAACGCA
GGCGGGAGTGGCTAGTGCTGCAGTTGCTGGATGA
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