mRNA_S-firma_M_contig9393.20372.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig9393.20372.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 5.080e-21 Identity = 60/145 (41.38%), Postives = 72/145 (49.66%), Query Frame = 2
Query: 215 MRVAWHSAVLLPVLLLPVVMSQDMVPTPSPTGTGMPTEMPVALDDMSYSSLTMSPXXXXXXXXXXXSDIYSEMCSNGMEGIDGNGMVCCPVSCGACAGSGCATRPG----GSEACCGNAIMDSGLLCSETGEAPCIIDEVVEFPT 637
M+++W SA+LLPVLLLPVV+ D C+NG+EGIDGNG+VCCP+ CG CAG GC G+++CCGNAI SG LCSETG APCIIDE PT
Sbjct: 1 MKLSWESALLLPVLLLPVVVQGDT-------------------------------------------------CTNGIEGIDGNGVVCCPLGCGRCAGEGCTAFGSENGLGADSCCGNAIKASGRLCSETGSAPCIIDEEGPSPT 96
BLAST of mRNA_S-firma_M_contig9393.20372.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 1.940e-15 Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 2
Query: 425 SEMCSNGMEGIDGNGMVCCPVSCGACAGSGCATRPG----GSEACCGNAIMDSGLLCSETGEAPCII 613
++ CS+G EGIDGNG+VCCP+ CG CAG GC T GSE+CCGN + GL C +T EAPCII
Sbjct: 501 TQTCSDGTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCII 567
BLAST of mRNA_S-firma_M_contig9393.20372.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 1.470e-14 Identity = 39/66 (59.09%), Postives = 45/66 (68.18%), Query Frame = 2
Query: 428 EMCSNGMEGIDGNGMVCCPVSCGACAGSGCATRPG----GSEACCGNAIMDSGLLCSETGEAPCII 613
E CSNG+EGIDGNG+VCCP+ C C G+GC T GSE+CCG I SG C +T EAPCII
Sbjct: 543 ETCSNGLEGIDGNGVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCII 608
BLAST of mRNA_S-firma_M_contig9393.20372.1 vs. uniprot
Match: A0A6H5JGP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP9_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.740e-14 Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 2
Query: 434 CSNGMEGIDGNGMVCCPVSCGACAGSGCATRPG----GSEACCGNAIMDSGLLCSETGEAPCI 610
C++G+EGIDGNG+VCCP+ CG CAG+GC GSE+CCG + D+G C TGEAPCI
Sbjct: 48 CNDGIEGIDGNGVVCCPLECGQCAGTGCTNFGADFGLGSESCCGGGVKDAGNYCDVTGEAPCI 110
BLAST of mRNA_S-firma_M_contig9393.20372.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 1.830e-14 Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 2
Query: 425 SEMCSNGMEGIDGNGMVCCPVSCGACAGSGCATRPG----GSEACCGNAIMDSGLLCSETGEAPCII 613
SE CSNG+EGIDGNG+VCCP+ CG C G+GC T G+++CCG +I S C ET EAPCII
Sbjct: 344 SETCSNGVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCII 410
BLAST of mRNA_S-firma_M_contig9393.20372.1 vs. uniprot
Match: A0A6H5K5T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T3_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 4.220e-13 Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 2
Query: 431 MCSNGMEGIDGNGMVCCPVSCGACAGSGCATRPGGSEACCGNAIMDSGLLCSETGEAPCI 610
MC G+ GI + VCC SCG+C GSGC +R GGSE+CCG + SG CS TGEAPC+
Sbjct: 1 MCDGGIVGIQASD-VCCSASCGSCGGSGCTSRDGGSESCCGGGVRASGRYCSITGEAPCL 59
BLAST of mRNA_S-firma_M_contig9393.20372.1 vs. uniprot
Match: A0A6H5L8H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H5_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 5.900e-13 Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 2
Query: 434 CSNGMEGIDGNGMVCCPVSCGACAGSGCATRPGG----SEACCGNAIMDSGLLCSETGEAPCI 610
CS+G+EGIDGNG+VCCP+ CG CAGSGC+T S +CCG I SG C +TG APCI
Sbjct: 535 CSDGIEGIDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCI 597
BLAST of mRNA_S-firma_M_contig9393.20372.1 vs. uniprot
Match: D7FIC5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC5_ECTSI) HSP 1 Score: 79.0 bits (193), Expect = 6.550e-13 Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 2
Query: 425 SEMCSNGMEGIDGNGMVCCPVSCGACAGSGCATRPGGS----EACCGNAIMDSGLLCSETGEAPCII 613
+E CSNG+EGIDGNG+VCCP++CG C G GC T + ++CCG I S C ET EAPCII
Sbjct: 445 TETCSNGLEGIDGNGVVCCPLACGQCGGKGCYTSGSANGLSGDSCCGGGIKASDEYCDETNEAPCII 511
BLAST of mRNA_S-firma_M_contig9393.20372.1 vs. uniprot
Match: A0A6H5KHK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK8_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 6.710e-13 Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 2
Query: 431 MCSNGMEGIDGNGMVCCPVSCGACAGSGCATRPGGSEACCGNAIMDSGLLCSETGEAPCIID 616
MC G+ GI + VCC SCG+C GSGC +R GGSE+CCG + SG CS TGEAPC+ D
Sbjct: 58 MCDGGIVGIQASD-VCCSASCGSCGGSGCTSRDGGSESCCGGGVRASGRYCSITGEAPCMTD 118
BLAST of mRNA_S-firma_M_contig9393.20372.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 9.590e-13 Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 2
Query: 434 CSNGMEGIDGNGMVCCPVSCGACAGSGCATRPG-----GSEACCGNAIMDSGLLCSETGEAPCII 613
CSNG++GIDGNG+VCCP+ C C GSGC T G G+E+CCG+ + SG C +T EAPCII
Sbjct: 527 CSNGVQGIDGNGIVCCPMECNQCGGSGC-THAGRAAGLGAESCCGSGVKASGRYCDDTDEAPCII 590 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9393.20372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig9393.20372.1 >prot_S-firma_M_contig9393.20372.1 ID=prot_S-firma_M_contig9393.20372.1|Name=mRNA_S-firma_M_contig9393.20372.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=208bp MRVAWHSAVLLPVLLLPVVMSQDMVPTPSPTGTGMPTEMPVALDDMSYSSback to top mRNA from alignment at S-firma_M_contig9393:503..3071- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig9393.20372.1 ID=mRNA_S-firma_M_contig9393.20372.1|Name=mRNA_S-firma_M_contig9393.20372.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2569bp|location=Sequence derived from alignment at S-firma_M_contig9393:503..3071- (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig9393:503..3071- >mRNA_S-firma_M_contig9393.20372.1 ID=mRNA_S-firma_M_contig9393.20372.1|Name=mRNA_S-firma_M_contig9393.20372.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1248bp|location=Sequence derived from alignment at S-firma_M_contig9393:503..3071- (Sphaerotrichia firma Sfir_13m male)back to top |