mRNA_S-firma_M_contig9258.20202.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9258.20202.1
Unique NamemRNA_S-firma_M_contig9258.20202.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: D7FSI9_ECTSI (Villin villin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI9_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 8.670e-16
Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    7 DVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAP------VSRLAQGYETSTFK 183
            DVYILDV  E+FVWVGRGS+VEEKKSGMPY  +     G    AP      ++RLAQGYETS FK
Sbjct:  190 DVYILDVMAEVFVWVGRGSSVEEKKSGMPYGYETTTFKGNGGGAPPRRSTPITRLAQGYETSAFK 254          
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: A0A6B2L065_9EUKA (HP domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L065_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 2.370e-13
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    4 DDVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRLAQGYETSTFK 183
            +D +ILDVG+EIFVWVG+G T +EK S M YA +F+ ++GR    P++RL QG ET  FK
Sbjct:   63 EDCFILDVGSEIFVWVGKGCTKQEKLSSMFYAQQFLLDSGRPDWIPITRLVQGAETPIFK 122          
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: A0A7S2WBD4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WBD4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 7.060e-13
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    7 DVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRLAQGYETSTFK 183
            D YILD G++IFVW G+G++  EKK  M  AAKFIE+ GR    PV R+ +  ETS FK
Sbjct:  276 DAYILDTGSQIFVWTGKGASKAEKKESMVIAAKFIEQEGRPNFTPVERVVESGETSMFK 334          
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: A0A7S2RPG3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPG3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 8.310e-13
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    7 DVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRLAQGYETSTFK 183
            D YILD G++IFVW G+G++  EKK  M  AAKFIE+ GR    PV R+ +  ETS FK
Sbjct:  276 DAYILDTGSQIFVWTGKGASKAEKKESMVIAAKFIEQEGRPNFTPVERVVESGETSMFK 334          
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: A0A1V9Z2D5_9STRA (Villin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z2D5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.560e-12
Identity = 26/60 (43.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    4 DDVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRLAQGYETSTFK 183
            DDV+I+D G  + VW+G+G++ +E+K+GM YA K++ ++ R    P++R+A+G E +TFK
Sbjct:  275 DDVFIVDAGNALHVWIGKGASADERKNGMIYATKYLSQSRRSSQTPITRVAEGAEGATFK 334          
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: A0A7S3F859_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F859_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 2.900e-12
Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    7 DVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRLAQGYETSTFK 183
            DVY+LDVG+E+ VW+G+G+T EEKK GM  A  +  E GR     VS++ +G E + FK
Sbjct:  275 DVYLLDVGSEVSVWIGKGATAEEKKGGMKIATDYCHEGGRPKGTKVSKVMEGAEPTAFK 333          
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: A0A1V9Z593_9STRA (Villin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z593_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.960e-12
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    4 DDVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRLAQGYETSTFK 183
            DDVYI+D G  + VW+G+G++ EE+K+GM YA K++ +  R    PV+R+A+  E + FK
Sbjct:  275 DDVYIVDAGNALHVWIGKGASPEERKNGMIYATKYLSQTKRSATTPVTRVAESAEGAAFK 334          
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: A0A812ZYT2_9DINO (GSN protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZYT2_9DINO)

HSP 1 Score: 67.8 bits (164), Expect = 9.850e-12
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    4 DDVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRLAQGYETSTFK 183
            +D +I+D G++I+VW GRG+T +EKK G+  A  F++E GR    PV R+ +G ET  FK
Sbjct:  276 NDSFIVDAGSQIYVWTGRGATAQEKKGGLAIAKAFLKEQGRPDWCPVQRVVEGGETPVFK 335          
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: UPI001CB99484 (villin-3-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB99484)

HSP 1 Score: 67.4 bits (163), Expect = 1.380e-11
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    4 DDVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRLAQGYETSTFK 183
            D  Y+ D G E+FVWVGR +TV+++K+    A +FI  N R  A  V+RL QGYET  FK
Sbjct:  280 DKCYLFDCGAEVFVWVGRTTTVDDRKAATQAAEEFITSNNRPKATLVTRLIQGYETHAFK 339          
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: A0A2J6K767_LACSA (HP domain-containing protein n=3 Tax=Asteraceae TaxID=4210 RepID=A0A2J6K767_LACSA)

HSP 1 Score: 67.4 bits (163), Expect = 1.380e-11
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   13 YILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRLAQGYETSTFK 183
            Y+LD G E+FVWVGR + VEE+K+ M  A +FI    R  A  V+RL QGYET +FK
Sbjct:  282 YLLDCGAEVFVWVGRVTQVEERKTAMQAAEEFIVSQNRPKATRVTRLIQGYETHSFK 338          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSI9_ECTSI8.670e-1661.54Villin villin n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6B2L065_9EUKA2.370e-1355.00HP domain-containing protein n=1 Tax=Arcella inter... [more]
A0A7S2WBD4_9STRA7.060e-1354.24Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2RPG3_9STRA8.310e-1354.24Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1V9Z2D5_9STRA1.560e-1243.33Villin n=1 Tax=Thraustotheca clavata TaxID=74557 R... [more]
A0A7S3F859_9EUKA2.900e-1249.15Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A1V9Z593_9STRA3.960e-1245.00Villin-like protein n=1 Tax=Achlya hypogyna TaxID=... [more]
A0A812ZYT2_9DINO9.850e-1246.67GSN protein (Fragment) n=1 Tax=Symbiodinium sp. KB... [more]
UPI001CB994841.380e-1150.00villin-3-like n=1 Tax=Erigeron canadensis TaxID=72... [more]
A0A2J6K767_LACSA1.380e-1154.39HP domain-containing protein n=3 Tax=Asteraceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9258contigS-firma_M_contig9258:104..292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog2880.D7FSI9
KEGG koko:K05761
EggNOG free text desc.actin filament capping
EggNOG OGsKOG0443@1,KOG0443@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828752.957997-CDS-S-firma_M_contig9258:103..2921622828752.957997-CDS-S-firma_M_contig9258:103..292Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9258 104..292 +
1697105141.4824257-CDS-S-firma_M_contig9258:103..2921697105141.4824257-CDS-S-firma_M_contig9258:103..292Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9258 104..292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9258.20202.1prot_S-firma_M_contig9258.20202.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9258 104..292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9258.20202.1

>prot_S-firma_M_contig9258.20202.1 ID=prot_S-firma_M_contig9258.20202.1|Name=mRNA_S-firma_M_contig9258.20202.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=63bp
PDDVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSR
LAQGYETSTFKG*
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mRNA from alignment at S-firma_M_contig9258:104..292+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9258.20202.1 ID=mRNA_S-firma_M_contig9258.20202.1|Name=mRNA_S-firma_M_contig9258.20202.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=189bp|location=Sequence derived from alignment at S-firma_M_contig9258:104..292+ (Sphaerotrichia firma Sfir_13m male)
CCGGACGACGTGTACATCCTGGATGTCGGGACCGAGATCTTCGTGTGGGT GGGCAGAGGCTCCACCGTGGAGGAGAAGAAGAGCGGGATGCCGTACGCGG CGAAGTTCATCGAGGAGAACGGGCGGGACGTGGCCGCGCCGGTGTCTCGC CTGGCGCAGGGCTACGAGACGTCTACGTTCAAGGGGTGA
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Coding sequence (CDS) from alignment at S-firma_M_contig9258:104..292+

>mRNA_S-firma_M_contig9258.20202.1 ID=mRNA_S-firma_M_contig9258.20202.1|Name=mRNA_S-firma_M_contig9258.20202.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=378bp|location=Sequence derived from alignment at S-firma_M_contig9258:104..292+ (Sphaerotrichia firma Sfir_13m male)
CCGGACGACGTGTACATCCTGGATGTCGGGACCGAGATCTTCGTGTGGGT
GGGCAGAGGCTCCACCGTGGAGGAGAAGAAGAGCGGGATGCCGTACGCGG
CGAAGTTCATCGAGGAGAACGGGCGGGACGTGGCCGCGCCGGTGTCTCGC
CTGGCGCAGGGCTACGAGACGTCTACGTTCAAGGGGTGACCGGACGACGT
GTACATCCTGGATGTCGGGACCGAGATCTTCGTGTGGGTGGGCAGAGGCT
CCACCGTGGAGGAGAAGAAGAGCGGGATGCCGTACGCGGCGAAGTTCATC
GAGGAGAACGGGCGGGACGTGGCCGCGCCGGTGTCTCGCCTGGCGCAGGG
CTACGAGACGTCTACGTTCAAGGGGTGA
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