mRNA_S-firma_M_contig9258.20202.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: D7FSI9_ECTSI (Villin villin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI9_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 8.670e-16 Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = 1
Query: 7 DVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAP------VSRLAQGYETSTFK 183
DVYILDV E+FVWVGRGS+VEEKKSGMPY + G AP ++RLAQGYETS FK
Sbjct: 190 DVYILDVMAEVFVWVGRGSSVEEKKSGMPYGYETTTFKGNGGGAPPRRSTPITRLAQGYETSAFK 254
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: A0A6B2L065_9EUKA (HP domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L065_9EUKA) HSP 1 Score: 72.4 bits (176), Expect = 2.370e-13 Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query: 4 DDVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRLAQGYETSTFK 183
+D +ILDVG+EIFVWVG+G T +EK S M YA +F+ ++GR P++RL QG ET FK
Sbjct: 63 EDCFILDVGSEIFVWVGKGCTKQEKLSSMFYAQQFLLDSGRPDWIPITRLVQGAETPIFK 122
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: A0A7S2WBD4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WBD4_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 7.060e-13 Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 7 DVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRLAQGYETSTFK 183
D YILD G++IFVW G+G++ EKK M AAKFIE+ GR PV R+ + ETS FK
Sbjct: 276 DAYILDTGSQIFVWTGKGASKAEKKESMVIAAKFIEQEGRPNFTPVERVVESGETSMFK 334
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: A0A7S2RPG3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPG3_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 8.310e-13 Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 7 DVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRLAQGYETSTFK 183
D YILD G++IFVW G+G++ EKK M AAKFIE+ GR PV R+ + ETS FK
Sbjct: 276 DAYILDTGSQIFVWTGKGASKAEKKESMVIAAKFIEQEGRPNFTPVERVVESGETSMFK 334
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: A0A1V9Z2D5_9STRA (Villin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z2D5_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 1.560e-12 Identity = 26/60 (43.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query: 4 DDVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRLAQGYETSTFK 183
DDV+I+D G + VW+G+G++ +E+K+GM YA K++ ++ R P++R+A+G E +TFK
Sbjct: 275 DDVFIVDAGNALHVWIGKGASADERKNGMIYATKYLSQSRRSSQTPITRVAEGAEGATFK 334
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: A0A7S3F859_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F859_9EUKA) HSP 1 Score: 69.3 bits (168), Expect = 2.900e-12 Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 7 DVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRLAQGYETSTFK 183
DVY+LDVG+E+ VW+G+G+T EEKK GM A + E GR VS++ +G E + FK
Sbjct: 275 DVYLLDVGSEVSVWIGKGATAEEKKGGMKIATDYCHEGGRPKGTKVSKVMEGAEPTAFK 333
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: A0A1V9Z593_9STRA (Villin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z593_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 3.960e-12 Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 4 DDVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRLAQGYETSTFK 183
DDVYI+D G + VW+G+G++ EE+K+GM YA K++ + R PV+R+A+ E + FK
Sbjct: 275 DDVYIVDAGNALHVWIGKGASPEERKNGMIYATKYLSQTKRSATTPVTRVAESAEGAAFK 334
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: A0A812ZYT2_9DINO (GSN protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZYT2_9DINO) HSP 1 Score: 67.8 bits (164), Expect = 9.850e-12 Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query: 4 DDVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRLAQGYETSTFK 183
+D +I+D G++I+VW GRG+T +EKK G+ A F++E GR PV R+ +G ET FK
Sbjct: 276 NDSFIVDAGSQIYVWTGRGATAQEKKGGLAIAKAFLKEQGRPDWCPVQRVVEGGETPVFK 335
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: UPI001CB99484 (villin-3-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB99484) HSP 1 Score: 67.4 bits (163), Expect = 1.380e-11 Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 4 DDVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRLAQGYETSTFK 183
D Y+ D G E+FVWVGR +TV+++K+ A +FI N R A V+RL QGYET FK
Sbjct: 280 DKCYLFDCGAEVFVWVGRTTTVDDRKAATQAAEEFITSNNRPKATLVTRLIQGYETHAFK 339
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Match: A0A2J6K767_LACSA (HP domain-containing protein n=3 Tax=Asteraceae TaxID=4210 RepID=A0A2J6K767_LACSA) HSP 1 Score: 67.4 bits (163), Expect = 1.380e-11 Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 13 YILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRLAQGYETSTFK 183
Y+LD G E+FVWVGR + VEE+K+ M A +FI R A V+RL QGYET +FK
Sbjct: 282 YLLDCGAEVFVWVGRVTQVEERKTAMQAAEEFIVSQNRPKATRVTRLIQGYETHSFK 338 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9258.20202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig9258.20202.1 >prot_S-firma_M_contig9258.20202.1 ID=prot_S-firma_M_contig9258.20202.1|Name=mRNA_S-firma_M_contig9258.20202.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=63bp PDDVYILDVGTEIFVWVGRGSTVEEKKSGMPYAAKFIEENGRDVAAPVSRback to top mRNA from alignment at S-firma_M_contig9258:104..292+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig9258.20202.1 ID=mRNA_S-firma_M_contig9258.20202.1|Name=mRNA_S-firma_M_contig9258.20202.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=189bp|location=Sequence derived from alignment at S-firma_M_contig9258:104..292+ (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig9258:104..292+ >mRNA_S-firma_M_contig9258.20202.1 ID=mRNA_S-firma_M_contig9258.20202.1|Name=mRNA_S-firma_M_contig9258.20202.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=378bp|location=Sequence derived from alignment at S-firma_M_contig9258:104..292+ (Sphaerotrichia firma Sfir_13m male)back to top |