mRNA_S-firma_M_contig924.20185.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig924.20185.1
Unique NamemRNA_S-firma_M_contig924.20185.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig924.20185.1 vs. uniprot
Match: A0A836CF13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF13_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.110e-5
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:  157 ENLRLQALVSELRAASPSVARLADLAVWKEREAFEEKQNRALALLRKKDAKIREL 321
            EN RL A V+ELR A PSVA+L  L V  ER A E+K  RAL LLR+KDA IR+L
Sbjct:   14 ENERLHATVAELRRAVPSVAKLVALEVGLERTAAEDKGRRALELLRRKDATIRQL 68
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig924.20185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CF13_9STRA1.110e-561.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig924contigS-firma_M_contig924:19005..20608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size412
Cds size408
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig924.20185.1prot_S-firma_M_contig924.20185.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig924 19005..20606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828750.977876-CDS-S-firma_M_contig924:19004..190491622828750.977876-CDS-S-firma_M_contig924:19004..19049Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig924 19005..19049 +
1697105140.3289132-CDS-S-firma_M_contig924:19004..190491697105140.3289132-CDS-S-firma_M_contig924:19004..19049Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig924 19005..19049 +
1622828750.9920387-CDS-S-firma_M_contig924:19718..198471622828750.9920387-CDS-S-firma_M_contig924:19718..19847Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig924 19719..19847 +
1697105140.338498-CDS-S-firma_M_contig924:19718..198471697105140.338498-CDS-S-firma_M_contig924:19718..19847Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig924 19719..19847 +
1622828751.0060246-CDS-S-firma_M_contig924:20372..206061622828751.0060246-CDS-S-firma_M_contig924:20372..20606Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig924 20373..20606 +
1697105140.348949-CDS-S-firma_M_contig924:20372..206061697105140.348949-CDS-S-firma_M_contig924:20372..20606Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig924 20373..20606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig924.20185.1

>prot_S-firma_M_contig924.20185.1 ID=prot_S-firma_M_contig924.20185.1|Name=mRNA_S-firma_M_contig924.20185.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=136bp
LASPAGYPSPLGMAQALRRTNVAPPHDAPAAKVMEGSTAAAGGDNPQQLL
KRENLRLQALVSELRAASPSVARLADLAVWKEREAFEEKQNRALALLRKK
DAKIRELGEAVARRRNNVSRQRAAADGKAAAEAAEA
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mRNA from alignment at S-firma_M_contig924:19005..20608+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig924.20185.1 ID=mRNA_S-firma_M_contig924.20185.1|Name=mRNA_S-firma_M_contig924.20185.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1604bp|location=Sequence derived from alignment at S-firma_M_contig924:19005..20608+ (Sphaerotrichia firma Sfir_13m male)
CTGGCGAGCCCGGCAGGGTATCCTTCCCCCTTAGGAATGGCTCAGGTTTG
ATTAATTTGCAGTAGATCGGTCGTCTGATATCGCTCCGTTTCCACACGTG
GAGAAGTCGGTGCCAGAAAAACAGGGGCGGAAACGCGTTCAACCTACAAA
GTCTACTGGTGTGACGGTTGGGTAGATCTCCGTCTGTCGCTAGTGTACAA
TATCCCTTCTTGCTTTGATATTCCCACCCAGAGGTACTACGACTGCTTTT
ATCCAGTCCTCGAAAAGCATGCCGCCGCCAGCCTTCGGTTCTGGTGCAGT
CGGTGCGCATTGTCGAAAAAGTCGTGTGGAGATCTACGTATATCCTGGGA
GATCATTTGGTATCCCGTTGGCTGCTGTTGTTGTAACAACCCCCGGTCGG
CAGCAAGCAGCACCAAAGAGTGTTCTCCGCTCACCGACCGGCATGTGCGG
CACCACCAGTGACCTGCCCGACACGATCCTGAGGGTGTATGTAGAAGGGG
CCCTGTGGTAGCAACGTCCCCATTTGTTTGGCGGTGCAGGTGTTCACGGC
ACCTGAAGTGCAACCAGTCGACGCCTTGCCGCCAGTTCGTTGCCATGGCA
GCAGGACACGTGAGCAGAAGCTACACCATGTACACTGTCACTGTCCCACA
CACAAACAGCAGTTCGATGAAGAAATATCCATCGGCCGTGATTTGCTCCG
GGATGCGCGCGCAGGCATTGCGTCGAACCAACGTGGCGCCGCCACACGAC
GCACCCGCTGCGAAGGTGATGGAAGGGTCCACAGCAGCGGCAGGGGGTGA
CAACCCCCAGCAGTTGCTCAAGAGGGAGAACCTGCGACTGCAGGTAGGCT
AGGCTAAGTGCAGCAGGTTGTTTATCCCGCGATGCATGACCTCGACTCGT
TTCCTTGAATGAGACGCATACCCATGACGAGTGGGTGCCCGCGTCCAACC
AAACCAACCCCAACAAACATAGGACACACACATCATCGCAACCCCAGCCG
AAAAAGCATTGTTGTCCAGTCCAAACACTTGGTCCAAACACTTGACAGGC
GACCAACTCCACAAGGGTTTGTAGAGACCCAGCCTCAGGGGCCACTCGCT
GCGCGACGGGGTGGGCGCGCTCTCATTTGCATCAGGGTTGTAATTTGCTC
ACAGCGGTTGTCGTGCGTAAAAGCCACCATTTCCCATCACGAATGAAAAA
TGGGGATTTGCTGGGTTTTGATGCCTGTATGTACGTTGGGACGGGTGAGG
GGGTGATCAGTGTGTCTACAACAGCGTTCCCCCGGGAACGAGCTCTTCAC
AGGTTGGACGTACACCGCTGACTCCAGAAAATTGAAAATTGCTCCAAAAA
AATAAAATGGCATGTCAGGCGCTGGTTTCCGAGCTACGCGCGGCCTCACC
CAGCGTGGCTCGCCTGGCCGACCTCGCGGTGTGGAAAGAGCGGGAGGCCT
TCGAGGAGAAGCAGAACCGCGCGCTGGCCCTCCTGCGGAAAAAGGACGCC
AAGATACGGGAGCTCGGCGAGGCCGTGGCCAGGCGCAGGAACAACGTGAG
CAGGCAAAGAGCTGCGGCAGACGGGAAGGCGGCTGCGGAGGCTGCGGAGG
CGGC
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Coding sequence (CDS) from alignment at S-firma_M_contig924:19005..20608+

>mRNA_S-firma_M_contig924.20185.1 ID=mRNA_S-firma_M_contig924.20185.1|Name=mRNA_S-firma_M_contig924.20185.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=816bp|location=Sequence derived from alignment at S-firma_M_contig924:19005..20608+ (Sphaerotrichia firma Sfir_13m male)
CTGGCGAGCCCGGCAGGGTATCCTTCCCCCTTAGGAATGGCTCAGCTGGC
GAGCCCGGCAGGGTATCCTTCCCCCTTAGGAATGGCTCAGGCATTGCGTC
GAACCAACGTGGCGCCGCCACACGACGCACCCGCTGCGAAGGTGATGGAA
GGGTCCACAGCAGCGGCAGGGGGTGACAACCCCCAGCAGTTGCTCAAGAG
GGAGAACCTGCGACTGCAGGCATTGCGTCGAACCAACGTGGCGCCGCCAC
ACGACGCACCCGCTGCGAAGGTGATGGAAGGGTCCACAGCAGCGGCAGGG
GGTGACAACCCCCAGCAGTTGCTCAAGAGGGAGAACCTGCGACTGCAGGC
GCTGGTTTCCGAGCTACGCGCGGCCTCACCCAGCGTGGCTCGCCTGGCCG
ACCTCGCGGTGTGGAAAGAGCGGGAGGCCTTCGAGGAGAAGCAGAACCGC
GCGCTGGCCCTCCTGCGGAAAAAGGACGCCAAGATACGGGAGCTCGGCGA
GGCCGTGGCCAGGCGCAGGAACAACGTGAGCAGGCAAAGAGCTGCGGCAG
ACGGGAAGGCGGCTGCGGAGGCTGCGGAGGCGGCGCTGGTTTCCGAGCTA
CGCGCGGCCTCACCCAGCGTGGCTCGCCTGGCCGACCTCGCGGTGTGGAA
AGAGCGGGAGGCCTTCGAGGAGAAGCAGAACCGCGCGCTGGCCCTCCTGC
GGAAAAAGGACGCCAAGATACGGGAGCTCGGCGAGGCCGTGGCCAGGCGC
AGGAACAACGTGAGCAGGCAAAGAGCTGCGGCAGACGGGAAGGCGGCTGC
GGAGGCTGCGGAGGCG
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