prot_S-firma_M_contig9036.19971.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9036.19971.1
Unique Nameprot_S-firma_M_contig9036.19971.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length106
Homology
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BLAST of mRNA_S-firma_M_contig9036.19971.1 vs. uniprot
Match: D8LCY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY6_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 7.100e-30
Identity = 71/102 (69.61%), Postives = 83/102 (81.37%), Query Frame = 0 
Query:    5 VALTLLQDHPAAKAAFLQPS-EPSSSGAP-SPSGKKRQRKAGTVSVELIAGKVQAGRYRTPVAFESDARQMITQGKGPRSLSAEQKEMLAFLEAEVSPKLRI 104
            VALTLL+DHP+AKAAFL+PS  P+SS A  S S  KR RKAG VS +L+A KV+AGRYR+  AFESDARQM+TQGKGPRSLS EQK+M+AF E E+ PKL I
Sbjct: 1869 VALTLLRDHPSAKAAFLKPSGTPASSAAGGSSSSPKRPRKAGAVSADLLAKKVEAGRYRSATAFESDARQMLTQGKGPRSLSPEQKKMVAFFEQEILPKLLI 1970
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BLAST of mRNA_S-firma_M_contig9036.19971.1 vs. uniprot
Match: A0A6H5KTV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV3_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.320e-29
Identity = 71/105 (67.62%), Postives = 84/105 (80.00%), Query Frame = 0 
Query:    5 VALTLLQDHPAAKAAFLQPSE-PSSSGA----PSPSGKKRQRKAGTVSVELIAGKVQAGRYRTPVAFESDARQMITQGKGPRSLSAEQKEMLAFLEAEVSPKLRI 104
            VALTLL+DHP+A AAFLQPS  P+SS A    PSP   KR RKAG V+ +L+A KV+AGRYR+  AFESDARQM+TQGKGPRSLS+EQKEM+AF E ++ PKL I
Sbjct: 1884 VALTLLRDHPSANAAFLQPSGIPASSAAGGSSPSP---KRPRKAGAVTADLLAKKVEAGRYRSATAFESDARQMLTQGKGPRSLSSEQKEMVAFFEQDILPKLLI 1985
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9036.19971.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCY6_ECTSI7.100e-3069.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTV3_9PHAE1.320e-2967.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..10
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..105
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9036contigS-firma_M_contig9036:1808..2972 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9036.19971.1mRNA_S-firma_M_contig9036.19971.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9036 1570..4296 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9036.19971.1 ID=prot_S-firma_M_contig9036.19971.1|Name=mRNA_S-firma_M_contig9036.19971.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=106bp
MPFAVALTLLQDHPAAKAAFLQPSEPSSSGAPSPSGKKRQRKAGTVSVEL
IAGKVQAGRYRTPVAFESDARQMITQGKGPRSLSAEQKEMLAFLEAEVSP
KLRIA*
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