mRNA_S-firma_M_contig9036.19971.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9036.19971.1
Unique NamemRNA_S-firma_M_contig9036.19971.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9036.19971.1 vs. uniprot
Match: D8LCY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY6_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.150e-25
Identity = 71/102 (69.61%), Postives = 83/102 (81.37%), Query Frame = 2 
Query:  251 VALTLLQDHPAAKAAFLQPS-EPSSSGAP-SPSGKKRQRKAGTVSVELIAGKVQAGRYRTPVAFESDARQMITQGKGPRSLSAEQKEMLAFLEAEVSPKLRI 550
            VALTLL+DHP+AKAAFL+PS  P+SS A  S S  KR RKAG VS +L+A KV+AGRYR+  AFESDARQM+TQGKGPRSLS EQK+M+AF E E+ PKL I
Sbjct: 1869 VALTLLRDHPSAKAAFLKPSGTPASSAAGGSSSSPKRPRKAGAVSADLLAKKVEAGRYRSATAFESDARQMLTQGKGPRSLSPEQKKMVAFFEQEILPKLLI 1970
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BLAST of mRNA_S-firma_M_contig9036.19971.1 vs. uniprot
Match: A0A6H5KTV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV3_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.030e-25
Identity = 71/105 (67.62%), Postives = 84/105 (80.00%), Query Frame = 2 
Query:  251 VALTLLQDHPAAKAAFLQPSE-PSSSGA----PSPSGKKRQRKAGTVSVELIAGKVQAGRYRTPVAFESDARQMITQGKGPRSLSAEQKEMLAFLEAEVSPKLRI 550
            VALTLL+DHP+A AAFLQPS  P+SS A    PSP   KR RKAG V+ +L+A KV+AGRYR+  AFESDARQM+TQGKGPRSLS+EQKEM+AF E ++ PKL I
Sbjct: 1884 VALTLLRDHPSANAAFLQPSGIPASSAAGGSSPSP---KRPRKAGAVTADLLAKKVEAGRYRSATAFESDARQMLTQGKGPRSLSSEQKEMVAFFEQDILPKLLI 1985
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9036.19971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCY6_ECTSI1.150e-2569.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTV3_9PHAE2.030e-2567.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9036contigS-firma_M_contig9036:1570..4296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue1.4e-26
Seed eggNOG ortholog2880.D8LCY6
KEGG koko:K08737,ko:K11267,ko:K11654
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
EggNOG free text desc.mitotic sister chromatid cohesion
EggNOG OGsCOG0553@1,KOG0385@2759,KOG1525@1,KOG1525@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size1880
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9036.19971.1prot_S-firma_M_contig9036.19971.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9036 1808..2972 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828726.756429-UTR-S-firma_M_contig9036:1569..18071622828726.756429-UTR-S-firma_M_contig9036:1569..1807Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9036 1570..1807 +
1697105125.4319065-UTR-S-firma_M_contig9036:1569..18071697105125.4319065-UTR-S-firma_M_contig9036:1569..1807Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9036 1570..1807 +
1622828726.8109274-UTR-S-firma_M_contig9036:2972..42961622828726.8109274-UTR-S-firma_M_contig9036:2972..4296Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9036 2973..4296 +
1697105125.4783394-UTR-S-firma_M_contig9036:2972..42961697105125.4783394-UTR-S-firma_M_contig9036:2972..4296Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9036 2973..4296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828726.7707949-CDS-S-firma_M_contig9036:1807..18781622828726.7707949-CDS-S-firma_M_contig9036:1807..1878Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9036 1808..1878 +
1697105125.4461987-CDS-S-firma_M_contig9036:1807..18781697105125.4461987-CDS-S-firma_M_contig9036:1807..1878Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9036 1808..1878 +
1622828726.786503-CDS-S-firma_M_contig9036:2352..25421622828726.786503-CDS-S-firma_M_contig9036:2352..2542Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9036 2353..2542 +
1697105125.455651-CDS-S-firma_M_contig9036:2352..25421697105125.455651-CDS-S-firma_M_contig9036:2352..2542Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9036 2353..2542 +
1622828726.7993839-CDS-S-firma_M_contig9036:2915..29721622828726.7993839-CDS-S-firma_M_contig9036:2915..2972Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9036 2916..2972 +
1697105125.4656668-CDS-S-firma_M_contig9036:2915..29721697105125.4656668-CDS-S-firma_M_contig9036:2915..2972Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9036 2916..2972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9036.19971.1

>prot_S-firma_M_contig9036.19971.1 ID=prot_S-firma_M_contig9036.19971.1|Name=mRNA_S-firma_M_contig9036.19971.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=106bp
MPFAVALTLLQDHPAAKAAFLQPSEPSSSGAPSPSGKKRQRKAGTVSVEL
IAGKVQAGRYRTPVAFESDARQMITQGKGPRSLSAEQKEMLAFLEAEVSP
KLRIA*
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mRNA from alignment at S-firma_M_contig9036:1570..4296+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9036.19971.1 ID=mRNA_S-firma_M_contig9036.19971.1|Name=mRNA_S-firma_M_contig9036.19971.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2727bp|location=Sequence derived from alignment at S-firma_M_contig9036:1570..4296+ (Sphaerotrichia firma Sfir_13m male)
GGGCAGCGCCGCCAACGCTCCCAGCCCAAGCCCGCCCAGAGAAGCGGGCT
CGGACGACGACGGGCAGGGGGGGTCGGAGGAAGGAGACGCGGAGGGGGCG
GGGGACAAAGACGACGACACGTCGGGAGCGGGGCGGAGAGAGCAGGGTGC
GGCGCAACCTAGAGAGTCGGGCCAATCAGAATCGGAGTCGGAGTCGGAGT
CGGATTCCGAGCCGGAGCGAGAGCCCAAGCCGGAGCCGATGCCGTTCGCG
GTGGCGTTGACGCTGCTGCAGGACCACCCCGCGGCAAAGGCGGCCTTCCT
GCAGCCTAGGTGAGTCAGCCAGGTGGATGTATTATTTTTTGTTGTTTTGT
ATGTTTGTTCTGCTTCTGAATACGTTGTTCTTTGAAACGTTTCAGAACCC
CATGAATATGGGTGTGTGTCTGTGTGTGTGTGTGTGTTGTTTTTTTTTTG
GTAAGTTGCCGTGGGTGACACGTGAGTCTCACGCTCCGGGGCGGCCTGCG
GGCTGTTAGTCCTGCGCGTCGGAATTTCTTCTCAGGTAGTGTGTTCCCCC
ACCTCAAGCTTGCTTTCGCGGGTTGGCTGGTTTGGCACTTGCACTGGCAC
TAGAGCCGCCTACTTGCAGGCTCCATCCAGGCTTGAAACCTCTCCAGCGA
GTAAAAATATTTCGATTTCCAAGCAGGTTCCGGGTTGTACACCTAACACG
CCCGGACGTTCATTCTCCCGACCACCACCACCACCGCGAAATGAATGACT
GTACACACGCCACGCGGCTGGACCATGTTGCAGCGAGCCCTCTTCAAGCG
GAGCTCCCTCGCCGAGCGGGAAGAAGCGGCAGCGGAAGGCGGGCACGGTT
AGCGTGGAGCTGATCGCCGGAAAGGTGCAGGCCGGGCGGTATCGTACCCC
TGTCGCCTTCGAGAGCGATGCCCGCCAGATGATCACCCAGGGCAAGGGGC
CGCGAAGCTTGAGTGCCGAACAGGTATTGCGCATGTACATGTACAAGTGT
GGCGCTTTGCTGCGCATGTGCATTAAGAAGTATGGCGCTTTGCTGCGCAT
ATACGTGTAGAAGTGTGGCGCTTTCTCTCGTCTGGTCTATTTAGTCTAGT
CTTGTCTCGTCTCCTTGCTTACCAGCGTCATCACGCCTGTCGCGAAATGT
TTGTTGAACGTCGACCTGTGTGTACCCCTCCCTCCGATATCCCTCTCCCT
CCGCTGCGATGCCGAAAATGTCGTCATCCTTGCCTGCCTACGGCCGTCTG
TGTGTTCCTGCCTGAAGCACGTGCCTGCTCTGACCGCACGCACGCCGAAC
GCGTCGTTTGTCTCTTTTACCGCACTCGTCTTTCCCCTGCTCCCAGAAAG
AAATGCTGGCGTTCTTGGAGGCGGAGGTTTCGCCCAAGCTTCGAATAGCA
TGACCCGTGGCGGGGGCGTGCGATGTCGCGGAAGTGTGTCTGCGTCCTTG
CGCGTCTGTTAGCCCTCTCCTACCTCCTACCCCTAGCTTGATTGACGCCA
CGAAGCGGGGTAAAGCAAGAGAGCGGGATGCACCTAAAAACCAGTTTCTG
GCCTTGCATAGAACCGGCAAAGGCGACGTTTGTAGCCACACGGAGGGCTA
GGCTTTCGAGGCGCCTTCTCAAAAGAGGACGTTCGATTTGATACGATGCG
GCGGAATGGAGAGCTGCAGCTTGCTGGCGCTTGAGAGCGGTCGCTGGTGG
TGGTGCTGATTGTGCTTGGTGCGGGTAGCGCTACTACTGCTGTATTTGTT
TTTTCGTGTAAGACTATTGCGAATCATCTGAGTACGATGTGTGTGTGTGT
GTACACCGTGAACCGCCGTATATTTTATTTTTTGTATCCCTTTTTACGTG
TATCCTTTTTATATCATTCGTTTATCCAAGTTATGTTTCGAAACAAGCAT
CCGTTTTGCTTGTTTTTGCGTTTGCCGCGCTGTACCCTAGTGGCCAGGGA
GTTACGCGCCTCGGTAATTCGTCGGTGTTCTAGTCACGGGGCCTCCGTTG
TGTCCCTCTTTCTTGGTTATCAGTACGCCTTCCCAGCGTCTTAGACGATA
GAAGGGGCGCCGTAGTCTCGCTCCTCGTCTCGGATGTAGGTATCGTATGT
GGGGCGAGGGGTGAGGGACTGCGGCAGTACGTGAGCCTCGGTTCCGCGTG
ATCTTTGGTCTTGCGGTGTTTGGGACGGACACGGGTACGTGCTTGAAACA
AAGACCAACCCAAACGGTCCGCTATATACCCAACCGGTGGCGTTTTCTTT
CCGGGTGTTCTCGAGTGTCGTTTGTGCGCGAGTTGACTGCATGCGTGCGT
GCGTTGCGTCACCGTTGTCTTCCGTCCGTGAGTTTTTCCTGCTTTCCCGG
ACCCGGGTCTGGGTCTTCATGAGTTTTAGATTGCTGTAGTGTAGTCTAGG
CTGTTGTTGCGGCGGTTAGGCGTGTGAGATTGTTGTCGCCTTTTTTCCGT
CGTTCAGCGCACTGTACGCAAAGGTAGAAATCCGAGCCCGTGTGTAACAT
ATTTATTTTCTACGGCAACCCTCGAAAGAGTGGGTGGGAGGTTGCACCGG
CACCATAAAGTGGCGTGGCGTTCGAGCAAGGGAGGCAGCTCACTATGTAG
TTTGAGATCGTCTAGAGCGGGGTGGGGTAGGTCGCCCCCCTTTGTTTTTT
GCACAGAGAGAAGGCAGAGAGCGGAGGGAGTCCCCTCGGATGTAAAGGGT
GTGACGGGGGGGGGGGGGGGGGGGGGG
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Coding sequence (CDS) from alignment at S-firma_M_contig9036:1570..4296+

>mRNA_S-firma_M_contig9036.19971.1 ID=mRNA_S-firma_M_contig9036.19971.1|Name=mRNA_S-firma_M_contig9036.19971.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=636bp|location=Sequence derived from alignment at S-firma_M_contig9036:1570..4296+ (Sphaerotrichia firma Sfir_13m male)
ATGCCGTTCGCGGTGGCGTTGACGCTGCTGCAGGACCACCCCGCGGCAAA
GGCGGCCTTCCTGCAGCCTAGATGCCGTTCGCGGTGGCGTTGACGCTGCT
GCAGGACCACCCCGCGGCAAAGGCGGCCTTCCTGCAGCCTAGCGAGCCCT
CTTCAAGCGGAGCTCCCTCGCCGAGCGGGAAGAAGCGGCAGCGGAAGGCG
GGCACGGTTAGCGTGGAGCTGATCGCCGGAAAGGTGCAGGCCGGGCGGTA
TCGTACCCCTGTCGCCTTCGAGAGCGATGCCCGCCAGATGATCACCCAGG
GCAAGGGGCCGCGAAGCTTGAGTGCCGAACAGCGAGCCCTCTTCAAGCGG
AGCTCCCTCGCCGAGCGGGAAGAAGCGGCAGCGGAAGGCGGGCACGGTTA
GCGTGGAGCTGATCGCCGGAAAGGTGCAGGCCGGGCGGTATCGTACCCCT
GTCGCCTTCGAGAGCGATGCCCGCCAGATGATCACCCAGGGCAAGGGGCC
GCGAAGCTTGAGTGCCGAACAGAAAGAAATGCTGGCGTTCTTGGAGGCGG
AGGTTTCGCCCAAGCTTCGAATAGCATGAAAAGAAATGCTGGCGTTCTTG
GAGGCGGAGGTTTCGCCCAAGCTTCGAATAGCATGA
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