mRNA_S-firma_F_contig10131.231.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10131.231.1
Unique NamemRNA_S-firma_F_contig10131.231.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10131.231.1 vs. uniprot
Match: D7G3Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z9_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 5.360e-85
Identity = 146/215 (67.91%), Postives = 164/215 (76.28%), Query Frame = 3 
Query:    9 MSTDLSASATPAKDGTSAASAPAXXXXXXXXXXRPKAASTVANTANQILFKNELYTSMKQKTMDNELMTKINRGAQEKEQRKFEHAKAAVARLETKQKVLIGVGDMLGPPGCDPSAYSSASIAVALSPLDTVRDVKKKLIAAAGWEDELPSDFGLFDDVSEEPLKDGQAIEAAMAPGKPLSAGKAASRRGGGGGRAVSSIRMPRPYVGVLWAARL 653
            MSTD SASA   KD     + PA              A++VA+TANQILFKNELYTSMKQKTMD ELM + NR A E+E+RKFE A+A VARLE K+KVLIGVGDM+GPPGCDPS  SSAS+AV L   DTVRDVKK+LIA AGW DELPSDFGLF+DVSEEPL DGQ+I+AA+AP KP SA K  SRRGG    A +SIR+PRPYVGVLWAARL
Sbjct:    1 MSTDASASAPVVKDAAPVNAVPALAAGTPAATG----ANSVASTANQILFKNELYTSMKQKTMDQELMARFNREAHEEEKRKFEKARAKVARLENKRKVLIGVGDMVGPPGCDPSECSSASVAVDLGLQDTVRDVKKRLIAEAGWRDELPSDFGLFNDVSEEPLMDGQSIDAALAPSKPSSAKKGVSRRGGSRATAAASIRLPRPYVGVLWAARL 211
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BLAST of mRNA_S-firma_F_contig10131.231.1 vs. uniprot
Match: A0A6H5K1B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B8_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.250e-53
Identity = 87/118 (73.73%), Postives = 101/118 (85.59%), Query Frame = 3 
Query:  300 KVLIGVGDMLGPPGCDPSAYSSASIAVALSPLDTVRDVKKKLIAAAGWEDELPSDFGLFDDVSEEPLKDGQAIEAAMAPGKPLSAGKAASRRGGGGGRAVSSIRMPRPYVGVLWAARL 653
            +VLIGVGDM+GPPGCDPS YSSAS+AV + P DTV DVKK+LIA AGW DELPSDFGLF+DVS+EPL DGQ+++AA+AP KP S+ KA SRRGG    A +SIR+PRPYVGVLWAARL
Sbjct:   15 QVLIGVGDMVGPPGCDPSEYSSASVAVDVGPQDTVWDVKKRLIAVAGWTDELPSDFGLFNDVSDEPLMDGQSVDAALAPNKPSSSKKAVSRRGGSRATAAASIRLPRPYVGVLWAARL 132
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10131.231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3Z9_ECTSI5.360e-8567.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1B8_9PHAE1.250e-5373.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10131contigS-firma_F_contig10131:3759..5245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_000650.1
Exons3
Model size659
Cds size651
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10131.231.1prot_S-firma_F_contig10131.231.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10131 3767..5245 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.9565697-UTR-S-firma_F_contig10131:3758..37661622815540.9565697-UTR-S-firma_F_contig10131:3758..3766Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10131 3759..3766 +
1696949402.2905755-UTR-S-firma_F_contig10131:3758..37661696949402.2905755-UTR-S-firma_F_contig10131:3758..3766Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10131 3759..3766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.9717484-CDS-S-firma_F_contig10131:3766..39191622815540.9717484-CDS-S-firma_F_contig10131:3766..3919Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10131 3767..3919 +
1696949402.3005636-CDS-S-firma_F_contig10131:3766..39191696949402.3005636-CDS-S-firma_F_contig10131:3766..3919Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10131 3767..3919 +
1622815540.9887128-CDS-S-firma_F_contig10131:4523..46641622815540.9887128-CDS-S-firma_F_contig10131:4523..4664Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10131 4524..4664 +
1696949402.3104315-CDS-S-firma_F_contig10131:4523..46641696949402.3104315-CDS-S-firma_F_contig10131:4523..4664Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10131 4524..4664 +
1622815541.003291-CDS-S-firma_F_contig10131:4888..52451622815541.003291-CDS-S-firma_F_contig10131:4888..5245Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10131 4889..5245 +
1696949402.3219976-CDS-S-firma_F_contig10131:4888..52451696949402.3219976-CDS-S-firma_F_contig10131:4888..5245Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10131 4889..5245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10131.231.1

>prot_S-firma_F_contig10131.231.1 ID=prot_S-firma_F_contig10131.231.1|Name=mRNA_S-firma_F_contig10131.231.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=217bp
MSTDLSASATPAKDGTSAASAPAAAAGPPAAVERPKAASTVANTANQILF
KNELYTSMKQKTMDNELMTKINRGAQEKEQRKFEHAKAAVARLETKQKVL
IGVGDMLGPPGCDPSAYSSASIAVALSPLDTVRDVKKKLIAAAGWEDELP
SDFGLFDDVSEEPLKDGQAIEAAMAPGKPLSAGKAASRRGGGGGRAVSSI
RMPRPYVGVLWAARLT*
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mRNA from alignment at S-firma_F_contig10131:3759..5245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10131.231.1 ID=mRNA_S-firma_F_contig10131.231.1|Name=mRNA_S-firma_F_contig10131.231.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1487bp|location=Sequence derived from alignment at S-firma_F_contig10131:3759..5245+ (Sphaerotrichia firma ET2_F female)
CAAGGATCATGTCAACGGATCTGAGTGCCTCGGCTACCCCAGCCAAGGAT
GGTACCTCCGCTGCGTCTGCACCTGCAGCGGCTGCTGGTCCGCCCGCTGC
GGTCGAGAGACCGAAGGCAGCCAGCACTGTCGCCAACACTGCGAACCAGA
TCCTCTTCAAAGTAAGATATCGTGGTCCAGTGTGTAGACCACGCGTGTCC
AGGCTTCTCGCCCTTTAGTACAGTGATCACAACCTCGTTTCACGGCGATG
TGTGCGTCAGGCGAAGCTTTTAATCGTACCCGCGACCATCGTGTTCATCC
AGAAAGACGTAGTTTACGACGAAAAACGACCCCAGAAACGAGAGATGGCG
TTGCCCCAGGATGCAGTTTTTCCGCCCGGCATAACGCTATATAGGCAGGG
AGCATTTCTTTAGGAGTAAGGGGAGCTAGTGAAACTTGAGGTCGCCCCAC
CCGTCCCATGACAGTATTATACGTTTGATAGTGTTCTTTCCTATCACCAC
GCTGATTACGTGAGATCGGTTCAACAGTATGTTCACTCGTCCAAATACGA
AGGGAAGACCATCCCGGCGCAATGCAGTCTCTGGTCCAAATTCCGAAACT
CACATTGAACGATGCCTGGTAAACGAGGATAGCATACAGCATAAAGCACG
AAAAGCGTAAACATGCACACTTGTCGATCATTCGGTGTTCTTAGTCAATG
CGCTTTGTCTATCTTGTCGATCCCACTTGCTCACCGCCTGCTGCGGTGCC
ACGCCCCTACTGTAGAATGAACTCTACACGAGCATGAAGCAGAAAACTAT
GGACAACGAGCTTATGACAAAGATCAACAGGGGGGCCCAGGAGAAAGAGC
AAAGAAAGTTTGAGCACGCCAAAGCCGCCGTCGCGAGACTGGAGACGAAG
CAAAAGGTGAGCCCTTCTCAATGGTATATTCCCTTTGGGAGGTGTAGACT
ACATGAAGGGACAGACCGCCTGTCGAACAAACATGTCGCAGCAAGAGTCC
AACGGACCACTACAGTAGTCTACATAGCTCATAGGTGCGACGCTTTGTTT
GCAACCGGTCTTACTACTGTACTGCCGCCGTGCCTCGGGCGCACGTCGCC
CGGACCCTACACCAAACGAATCCACCGCAGGTCCTGATCGGAGTAGGTGA
CATGCTCGGCCCGCCGGGGTGCGACCCTAGCGCCTACTCCTCGGCTTCCA
TCGCCGTGGCTCTCAGCCCCCTCGACACCGTTCGCGACGTGAAGAAGAAG
CTCATCGCCGCGGCAGGTTGGGAGGACGAGCTCCCATCAGATTTCGGCCT
CTTCGACGACGTGTCCGAGGAGCCGCTGAAGGACGGGCAGGCGATAGAGG
CGGCGATGGCCCCCGGCAAGCCTCTGTCCGCCGGGAAAGCGGCGTCGAGG
CGAGGTGGGGGCGGCGGTAGGGCGGTTTCGTCGATCCGTATGCCGCGACC
ATACGTGGGCGTGCTGTGGGCGGCGAGATTGACGTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10131:3759..5245+

>mRNA_S-firma_F_contig10131.231.1 ID=mRNA_S-firma_F_contig10131.231.1|Name=mRNA_S-firma_F_contig10131.231.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1302bp|location=Sequence derived from alignment at S-firma_F_contig10131:3759..5245+ (Sphaerotrichia firma ET2_F female)
ATGTCAACGGATCTGAGTGCCTCGGCTACCCCAGCCAAGGATGGTACCTC
CGCTGCGTCTGCACCTGCAGCGGCTGCTGGTCCGCCCGCTGCGGTCGAGA
GACCGAAGGCAGCCAGCACTGTCGCCAACACTGCGAACCAGATCCTCTTC
AAAATGTCAACGGATCTGAGTGCCTCGGCTACCCCAGCCAAGGATGGTAC
CTCCGCTGCGTCTGCACCTGCAGCGGCTGCTGGTCCGCCCGCTGCGGTCG
AGAGACCGAAGGCAGCCAGCACTGTCGCCAACACTGCGAACCAGATCCTC
TTCAAAAATGAACTCTACACGAGCATGAAGCAGAAAACTATGGACAACGA
GCTTATGACAAAGATCAACAGGGGGGCCCAGGAGAAAGAGCAAAGAAAGT
TTGAGCACGCCAAAGCCGCCGTCGCGAGACTGGAGACGAAGCAAAAGAAT
GAACTCTACACGAGCATGAAGCAGAAAACTATGGACAACGAGCTTATGAC
AAAGATCAACAGGGGGGCCCAGGAGAAAGAGCAAAGAAAGTTTGAGCACG
CCAAAGCCGCCGTCGCGAGACTGGAGACGAAGCAAAAGGTCCTGATCGGA
GTAGGTGACATGCTCGGCCCGCCGGGGTGCGACCCTAGCGCCTACTCCTC
GGCTTCCATCGCCGTGGCTCTCAGCCCCCTCGACACCGTTCGCGACGTGA
AGAAGAAGCTCATCGCCGCGGCAGGTTGGGAGGACGAGCTCCCATCAGAT
TTCGGCCTCTTCGACGACGTGTCCGAGGAGCCGCTGAAGGACGGGCAGGC
GATAGAGGCGGCGATGGCCCCCGGCAAGCCTCTGTCCGCCGGGAAAGCGG
CGTCGAGGCGAGGTGGGGGCGGCGGTAGGGCGGTTTCGTCGATCCGTATG
CCGCGACCATACGTGGGCGTGCTGTGGGCGGCGAGATTGACGTGAGTCCT
GATCGGAGTAGGTGACATGCTCGGCCCGCCGGGGTGCGACCCTAGCGCCT
ACTCCTCGGCTTCCATCGCCGTGGCTCTCAGCCCCCTCGACACCGTTCGC
GACGTGAAGAAGAAGCTCATCGCCGCGGCAGGTTGGGAGGACGAGCTCCC
ATCAGATTTCGGCCTCTTCGACGACGTGTCCGAGGAGCCGCTGAAGGACG
GGCAGGCGATAGAGGCGGCGATGGCCCCCGGCAAGCCTCTGTCCGCCGGG
AAAGCGGCGTCGAGGCGAGGTGGGGGCGGCGGTAGGGCGGTTTCGTCGAT
CCGTATGCCGCGACCATACGTGGGCGTGCTGTGGGCGGCGAGATTGACGT
GA
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