mRNA_S-firma_F_contig1109.1448.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1109.1448.1
Unique NamemRNA_S-firma_F_contig1109.1448.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1109.1448.1 vs. uniprot
Match: A0A6H5K8G9_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8G9_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.050e-12
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 YTAHAVIQHLG-VDNMGHFVTVVRQTAQPGSQWWLCNDGKVSTVSWTEVTMNAVAVLYRRVP 183
            Y A AV+QH G     GH VT+VR+ ++ GS+WWLCND  + +VS   VT NAVAVLYRRVP
Sbjct: 1573 YMAVAVMQHWGPYCTSGHNVTLVRKDSKAGSEWWLCNDEDILSVSSACVTRNAVAVLYRRVP 1634
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BLAST of mRNA_S-firma_F_contig1109.1448.1 vs. uniprot
Match: D7G1K7_ECTSI (Similar to deubiquitinating enzyme 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K7_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 5.580e-12
Identity = 35/62 (56.45%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    1 YTAHAVIQHLGVD-NMGHFVTVVRQTAQPGSQWWLCNDGKVSTVSWTEVTMNAVAVLYRRVP 183
            Y A AV+QH G     GH VT+VR+ +  GS WWLCND  + +VS   V  NAVAVLYRRVP
Sbjct:  129 YMAVAVMQHWGPHCTSGHNVTLVRKDSNAGSDWWLCNDEDILSVSSACVARNAVAVLYRRVP 190
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BLAST of mRNA_S-firma_F_contig1109.1448.1 vs. uniprot
Match: D7G1K0_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K0_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.460e-11
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 YTAHAVIQHLGVD-NMGHFVTVVRQTAQPGSQWWLCNDGKVSTVSWTEVTMNAVAVLYRRVP 183
            Y A AV+QH G     GH VT+VR+ +  GS+WWLCND  + +VS   V  NAVAVLYRRVP
Sbjct: 1862 YMAVAVMQHWGPHCTSGHNVTLVRKDSNAGSEWWLCNDEDILSVSSACVARNAVAVLYRRVP 1923
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1109.1448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K8G9_9PHAE3.050e-1258.06USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G1K7_ECTSI5.580e-1256.45Similar to deubiquitinating enzyme 3 n=1 Tax=Ectoc... [more]
D7G1K0_ECTSI1.460e-1156.45USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1109contigS-firma_F_contig1109:20764..20955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog246437.XP_006158418.1
Preferred nameUSP18
PFAMsUCH
Max annot lvl33208|Metazoa
KEGG koko:K11846
GOsGO:0001959,GO:0002682,GO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009605,GO:0009607,GO:0009617,GO:0009966,GO:0009987,GO:0010033,GO:0010646,GO:0014070,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019785,GO:0023051,GO:0031347,GO:0032101,GO:0035634,GO:0036211,GO:0036459,GO:0042221,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0048583,GO:0050727,GO:0050776,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0060338,GO:0060759,GO:0065007,GO:0070011,GO:0070646,GO:0070647,GO:0071704,GO:0080134,GO:0101005,GO:0140096,GO:1901564
Evalue0.000849
EggNOG OGsCOG5077@1|root,KOG1863@2759|Eukaryota,39UV1@33154|Opisthokonta,3BG0D@33208|Metazoa,3D2QC@33213|Bilateria,47ZEY@7711|Chordata,490GH@7742|Vertebrata,3J6QZ@40674|Mammalia,35J2J@314146|Euarchontoglires
EC3.4.19.12
DescriptionBelongs to the peptidase C19 family
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.0853064-CDS-S-firma_F_contig1109:20763..209551622815658.0853064-CDS-S-firma_F_contig1109:20763..20955Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1109 20764..20955 -
1696949483.7376919-CDS-S-firma_F_contig1109:20763..209551696949483.7376919-CDS-S-firma_F_contig1109:20763..20955Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1109 20764..20955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1109.1448.1prot_S-firma_F_contig1109.1448.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1109 20764..20955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1109.1448.1

>prot_S-firma_F_contig1109.1448.1 ID=prot_S-firma_F_contig1109.1448.1|Name=mRNA_S-firma_F_contig1109.1448.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=64bp
YTAHAVIQHLGVDNMGHFVTVVRQTAQPGSQWWLCNDGKVSTVSWTEVTM
NAVAVLYRRVPVS*
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mRNA from alignment at S-firma_F_contig1109:20764..20955-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1109.1448.1 ID=mRNA_S-firma_F_contig1109.1448.1|Name=mRNA_S-firma_F_contig1109.1448.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=192bp|location=Sequence derived from alignment at S-firma_F_contig1109:20764..20955- (Sphaerotrichia firma ET2_F female)
TACACGGCCCACGCGGTCATCCAGCACCTCGGGGTTGACAACATGGGCCA
CTTCGTGACCGTTGTGAGACAGACGGCACAGCCTGGGTCGCAGTGGTGGC
TCTGCAACGATGGGAAAGTCTCGACCGTATCGTGGACCGAGGTCACGATG
AACGCGGTTGCGGTTCTCTACCGACGGGTGCCGGTTTCCTAA
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Coding sequence (CDS) from alignment at S-firma_F_contig1109:20764..20955-

>mRNA_S-firma_F_contig1109.1448.1 ID=mRNA_S-firma_F_contig1109.1448.1|Name=mRNA_S-firma_F_contig1109.1448.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=384bp|location=Sequence derived from alignment at S-firma_F_contig1109:20764..20955- (Sphaerotrichia firma ET2_F female)
TACACGGCCCACGCGGTCATCCAGCACCTCGGGGTTGACAACATGGGCCA
CTTCGTGACCGTTGTGAGACAGACGGCACAGCCTGGGTCGCAGTGGTGGC
TCTGCAACGATGGGAAAGTCTCGACCGTATCGTGGACCGAGGTCACGATG
AACGCGGTTGCGGTTCTCTACCGACGGGTGCCGGTTTCCTAATACACGGC
CCACGCGGTCATCCAGCACCTCGGGGTTGACAACATGGGCCACTTCGTGA
CCGTTGTGAGACAGACGGCACAGCCTGGGTCGCAGTGGTGGCTCTGCAAC
GATGGGAAAGTCTCGACCGTATCGTGGACCGAGGTCACGATGAACGCGGT
TGCGGTTCTCTACCGACGGGTGCCGGTTTCCTAA
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