prot_S-firma_F_contig1109.1448.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1109.1448.1
Unique Nameprot_S-firma_F_contig1109.1448.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length64
Homology
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BLAST of mRNA_S-firma_F_contig1109.1448.1 vs. uniprot
Match: A0A6H5K8G9_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8G9_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.050e-12
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 0 
Query:    1 YTAHAVIQHLG-VDNMGHFVTVVRQTAQPGSQWWLCNDGKVSTVSWTEVTMNAVAVLYRRVP 61
            Y A AV+QH G     GH VT+VR+ ++ GS+WWLCND  + +VS   VT NAVAVLYRRVP
Sbjct: 1573 YMAVAVMQHWGPYCTSGHNVTLVRKDSKAGSEWWLCNDEDILSVSSACVTRNAVAVLYRRVP 1634
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BLAST of mRNA_S-firma_F_contig1109.1448.1 vs. uniprot
Match: D7G1K7_ECTSI (Similar to deubiquitinating enzyme 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K7_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 5.580e-12
Identity = 35/62 (56.45%), Postives = 41/62 (66.13%), Query Frame = 0 
Query:    1 YTAHAVIQHLGVD-NMGHFVTVVRQTAQPGSQWWLCNDGKVSTVSWTEVTMNAVAVLYRRVP 61
            Y A AV+QH G     GH VT+VR+ +  GS WWLCND  + +VS   V  NAVAVLYRRVP
Sbjct:  129 YMAVAVMQHWGPHCTSGHNVTLVRKDSNAGSDWWLCNDEDILSVSSACVARNAVAVLYRRVP 190
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BLAST of mRNA_S-firma_F_contig1109.1448.1 vs. uniprot
Match: D7G1K0_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K0_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.460e-11
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 0 
Query:    1 YTAHAVIQHLGVD-NMGHFVTVVRQTAQPGSQWWLCNDGKVSTVSWTEVTMNAVAVLYRRVP 61
            Y A AV+QH G     GH VT+VR+ +  GS+WWLCND  + +VS   V  NAVAVLYRRVP
Sbjct: 1862 YMAVAVMQHWGPHCTSGHNVTLVRKDSNAGSEWWLCNDEDILSVSSACVARNAVAVLYRRVP 1923
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1109.1448.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K8G9_9PHAE3.050e-1258.06USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G1K7_ECTSI5.580e-1256.45Similar to deubiquitinating enzyme 3 n=1 Tax=Ectoc... [more]
D7G1K0_ECTSI1.460e-1156.45USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 1..56
e-value: 3.0E-6
score: 26.9
NoneNo IPR availableGENE3D3.90.70.10coord: 1..63
e-value: 9.1E-12
score: 46.5
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 1..60
score: 12.751
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 1..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1109contigS-firma_F_contig1109:20764..20955 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1109.1448.1mRNA_S-firma_F_contig1109.1448.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1109 20764..20955 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1109.1448.1 ID=prot_S-firma_F_contig1109.1448.1|Name=mRNA_S-firma_F_contig1109.1448.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=64bp
YTAHAVIQHLGVDNMGHFVTVVRQTAQPGSQWWLCNDGKVSTVSWTEVTM
NAVAVLYRRVPVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038765Papain-like_cys_pep_sf
IPR028889USP_dom
IPR001394Peptidase_C19_UCH