mRNA_S-firma_F_contig10072.143.1 (mRNA) Sphaerotrichia firma ET2_F female
|
Overview
Homology
BLAST of mRNA_S-firma_F_contig10072.143.1 vs. uniprot
Match: D7G0W4_ECTSI (ABC transmembrane type-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W4_ECTSI) HSP 1 Score: 311 bits (798), Expect = 4.020e-98 Identity = 168/194 (86.60%), Postives = 178/194 (91.75%), Query Frame = 1
Query: 1 MIDNVVERGDKHEFHRSTLYLVLAAVACATFSGIRGCIFTIVGARVNVRVRQRLFESLVRQEIGFFDTTKTGDLTSRLSSDCTKVGDQVTVNVNVFLRNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKLYGNYIRKLSKLSQDKLAEAGSVAEESLGSMTTVRSFAAEGRESKEYAGKLQDNDASNPAF 582
MIDNVVE G EF RST+YLVLAAV+CA FSGIRGCIF++VGARVNVRVR+RLFESLVRQEIGFFDTTKTGDLTSRL+SDCTKVGDQVT+NVNVFLRN VMVVVTLLFMFYLSWRLSLVAFISVPAIV VSK YG YIRKLSKLSQDKLAEAGSVAEESLGSM+TVRSFAAEGRESKEYA KLQD ++P
Sbjct: 113 MIDNVVEGGGDSEFRRSTVYLVLAAVSCAIFSGIRGCIFSVVGARVNVRVRRRLFESLVRQEIGFFDTTKTGDLTSRLASDCTKVGDQVTLNVNVFLRNLVMVVVTLLFMFYLSWRLSLVAFISVPAIVIVSKWYGEYIRKLSKLSQDKLAEAGSVAEESLGSMSTVRSFAAEGRESKEYAKKLQDRTPTSPTL 306
BLAST of mRNA_S-firma_F_contig10072.143.1 vs. uniprot
Match: A0A4D9CQ84_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQ84_9STRA) HSP 1 Score: 246 bits (629), Expect = 1.530e-74 Identity = 133/235 (56.60%), Postives = 167/235 (71.06%), Query Frame = 3
Query: 615 YYALSKKGGYAYGFYASSFVLLPNLVTAVVLFYGGQLVMQGE-ITGGKVVSFMIYLTSLSDGFNDMASIFSSMTQAVGAADKVFELISREPKGATPTGTPPPAEMGMRSGPDAIAAAEAAAAGEKPDFCLGAVELRNVDFEYPSRPGRRILDGVSFNAAAGQVLALVGPSGGGKSSCIALLENLYHPSRGQVMLDGLAVHKYDHHWLHRNISIVGQEPTLYARSIRENIIYGLEG 1316
YY L+K+ AYG YA + LLPNLVTA+VLFYGGQLV+ + +T G++VSF++ L SLS+GF++M SIFSS+TQA+GAADKVFELI R P+ +TP PP A P FC G VELR+V F YP+RP R +L+ ++ A G+V+ALVGPSGGGKSSC+ALLEN Y P G V+LDG V +YD HW HR++SIV QEP LYARSIR+NI++GLEG
Sbjct: 24 YYDLNKQEARAYGAYAVATTLLPNLVTALVLFYGGQLVLNEDGLTSGQLVSFLLLLGSLSEGFSNMGSIFSSITQALGAADKVFELIRRPPQ-STPLPIPPLA----------------------PAFCSGKVELRDVTFRYPARPARPVLNKINMLAEPGKVVALVGPSGGGKSSCVALLENFYEPESGMVLLDGRKVQEYDPHWYHRHVSIVSQEPMLYARSIRQNILFGLEG 235
BLAST of mRNA_S-firma_F_contig10072.143.1 vs. uniprot
Match: A0A835YSY9_9STRA (ABC transporter type 1, transmembrane domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSY9_9STRA) HSP 1 Score: 249 bits (635), Expect = 3.060e-72 Identity = 128/234 (54.70%), Postives = 161/234 (68.80%), Query Frame = 3
Query: 615 YYALSKKGGYAYGFYASSFVLLPNLVTAVVLFYGGQLVMQGEITGGKVVSFMIYLTSLSDGFNDMASIFSSMTQAVGAADKVFELISREPKGATPTGTPPPAEMGMRSGPDAIAAAEAAAAGEKPDFCLGAVELRNVDFEYPSRPGRRILDGVSFNAAAGQVLALVGPSGGGKSSCIALLENLYHPSRGQVMLDGLAVHKYDHHWLHRNISIVGQEPTLYARSIRENIIYGLEG 1316
YYAL+ + AYG YAS+ LLP LVT +VLFYGG++V+ G++ GG VV+FM+YL+SLSDGFN+M +IFSS+TQAVGAADKVFELI REP+ P G A +P C G + L V F YP+RP R +L GV+ GQVLALVGPSGGGKSSC++L+EN YHP +G+++LDG V DH W HR +S+VGQEP LY R+I +NI+YGLEG
Sbjct: 293 YYALAIREAAAYGAYASTAALLPQLVTVLVLFYGGRMVLAGQLDGGSVVAFMLYLSSLSDGFNNMGAIFSSITQAVGAADKVFELIRREPQVRKPRG----------------------GAALRPLECAGELTLEEVHFTYPARPTRPVLHGVNLVVRPGQVLALVGPSGGGKSSCVSLIENFYHPDQGRLLLDGTPVQDLDHRWYHRVVSLVGQEPVLYGRTIEQNILYGLEG 504
BLAST of mRNA_S-firma_F_contig10072.143.1 vs. uniprot
Match: W7TKE5_9STRA (Atp-binding cassette sub-family b member 9 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKE5_9STRA) HSP 1 Score: 249 bits (635), Expect = 2.320e-70 Identity = 135/235 (57.45%), Postives = 167/235 (71.06%), Query Frame = 3
Query: 615 YYALSKKGGYAYGFYASSFVLLPNLVTAVVLFYGGQLVM-QGEITGGKVVSFMIYLTSLSDGFNDMASIFSSMTQAVGAADKVFELISREPKGATPTGTPPPAEMGMRSGPDAIAAAEAAAAGEKPDFCLGAVELRNVDFEYPSRPGRRILDGVSFNAAAGQVLALVGPSGGGKSSCIALLENLYHPSRGQVMLDGLAVHKYDHHWLHRNISIVGQEPTLYARSIRENIIYGLEG 1316
YY L+K+ AYG YA + LLPNLVTA+VLFYGGQLV+ Q +T G++VSF++ L SLS+GF++M SIFSS+TQA+GAADKVFELI R P+ +TP PP A P FC G VELR+V F YP+RP R +L+ ++ A G+V+ALVGPSGGGKSSC+ALLEN Y P G V+LDG V +YD HW HRN+SIV QEP LYARSIR+NI++GLEG
Sbjct: 569 YYDLNKQEARAYGAYAVATTLLPNLVTALVLFYGGQLVLNQDGLTSGQLVSFLLLLGSLSEGFSNMGSIFSSITQALGAADKVFELIRRPPQ-STPLPEPPLA----------------------PAFCSGKVELRDVTFRYPARPARPVLNKMNMLAEPGKVVALVGPSGGGKSSCVALLENFYEPESGMVLLDGRKVQEYDPHWYHRNVSIVSQEPVLYARSIRQNILFGLEG 780
BLAST of mRNA_S-firma_F_contig10072.143.1 vs. uniprot
Match: A0A7S4QZM3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QZM3_9STRA) HSP 1 Score: 218 bits (554), Expect = 1.020e-59 Identity = 122/252 (48.41%), Postives = 166/252 (65.87%), Query Frame = 3
Query: 609 GSYYALSKKGGYAYGFYASSFVLLPNLVTAVVLFYGGQLVMQGEITGGKVVSFMIYLTSLSDGFNDMASIFSSMTQAVGAADKVFELISREPKGATPTGTPPPA---EMG----------MRSGPDAIA---AAEAAAAGEKPDFCLGAVELRNVDFEYPSRPGRRILDGVSFNAAAGQVLALVGPSGGGKSSCIALLENLYHPSRGQVMLDGLAVHKYDHHWLHRNISIVGQEPTLYARSIRENIIYGLEG 1316
G Y +++ + YAY Y S LP LVTAVVLFYGG LV ++T G++VSF++YL SLSD FN + +IFSS+TQA+GAADKVFELI R+P+ +P+ + + E G + GP I + E G +P C G V L V+ YP+RP R++L G++ A AG V+ALVGPSGGGKSS ++L+++LY PS G+V +DG VH WL R++++V QEPTL+ARS+R NI+YGLEG
Sbjct: 438 GQYLSINLRSAYAYLGYCSCITSLPQLVTAVVLFYGGLLVEDRQMTSGELVSFILYLNSLSDAFNTIGNIFSSLTQAMGAADKVFELIHRKPQLTSPSSSSNLSIHEENGGNNTRCCGRKTKCGPTYIMPKRSEEHRKRGLQPSTCNGVVTLHGVNLCYPARPLRQVLHGMNLTAPAGAVVALVGPSGGGKSSVVSLIQHLYEPSNGEVCIDGNKVHDLSPEWLSRHVTVVSQEPTLFARSVRRNIMYGLEG 689
BLAST of mRNA_S-firma_F_contig10072.143.1 vs. uniprot
Match: A0A1E7FK35_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FK35_9STRA) HSP 1 Score: 212 bits (539), Expect = 2.690e-59 Identity = 115/234 (49.15%), Postives = 155/234 (66.24%), Query Frame = 3
Query: 615 YYALSKKGGYAYGFYASSFVLLPNLVTAVVLFYGGQLVMQGEITGGKVVSFMIYLTSLSDGFNDMASIFSSMTQAVGAADKVFELISREPKGATPTGTPPPAEMGMRSGPDAIAAAEAAAAGEKPDFCLGAVELRNVDFEYPSRPGRRILDGVSFNAAAGQVLALVGPSGGGKSSCIALLENLYHPSRGQVMLDGLAVHKYDHHWLHRNISIVGQEPTLYARSIRENIIYGLEG 1316
Y AL+ K AY YA+ LP LVTA+V+FYGG LV G+I+ G++VSF++YL SLSDGF+ + IFSS+TQAVGAADKVFEL+ R+ G P + G+ +P+ C G V L+NV+ YP+RP RR+L+ +S + G ++AL G SGGGKSS I+L++++Y S G+V+LD + VH+Y WL + ISIV QEP L+ARSIR NI+YGLEG
Sbjct: 173 YLALNTKSAIAYSGYATVSTSLPQLVTALVVFYGGLLVRNGDISSGELVSFLLYLQSLSDGFSSIGYIFSSLTQAVGAADKVFELMYRKRPGM------PQQQHGL-----------------EPNTCRGEVTLKNVEMYYPARPNRRVLNDMSLSVPPGSIIALCGASGGGKSSIISLVQHMYEQSSGKVLLDDVEVHEYSPRWLSQQISIVQQEPILFARSIRRNIMYGLEG 383
BLAST of mRNA_S-firma_F_contig10072.143.1 vs. uniprot
Match: A0A6U3T7I6_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3T7I6_9STRA) HSP 1 Score: 218 bits (554), Expect = 6.840e-59 Identity = 122/252 (48.41%), Postives = 166/252 (65.87%), Query Frame = 3
Query: 609 GSYYALSKKGGYAYGFYASSFVLLPNLVTAVVLFYGGQLVMQGEITGGKVVSFMIYLTSLSDGFNDMASIFSSMTQAVGAADKVFELISREPKGATPTGTPPPA---EMG----------MRSGPDAIA---AAEAAAAGEKPDFCLGAVELRNVDFEYPSRPGRRILDGVSFNAAAGQVLALVGPSGGGKSSCIALLENLYHPSRGQVMLDGLAVHKYDHHWLHRNISIVGQEPTLYARSIRENIIYGLEG 1316
G Y +++ + YAY Y S LP LVTAVVLFYGG LV ++T G++VSF++YL SLSD FN + +IFSS+TQA+GAADKVFELI R+P+ +P+ + + E G + GP I + E G +P C G V L V+ YP+RP R++L G++ A AG V+ALVGPSGGGKSS ++L+++LY PS G+V +DG VH WL R++++V QEPTL+ARS+R NI+YGLEG
Sbjct: 581 GQYLSINLRSAYAYLGYCSCITSLPQLVTAVVLFYGGLLVEDRQMTSGELVSFILYLNSLSDAFNTIGNIFSSLTQAMGAADKVFELIHRKPQLTSPSSSSNLSIHEENGGNNTRCCGRETKCGPTYIMPKRSEEHRKRGLQPSTCNGVVTLHGVNLCYPARPLRQVLHGMNLTAPAGAVVALVGPSGGGKSSVVSLIQHLYEPSNGEVCIDGNKVHDLSPEWLSRHVTVVSQEPTLFARSVRRNIMYGLEG 832
BLAST of mRNA_S-firma_F_contig10072.143.1 vs. uniprot
Match: A0A448ZA23_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZA23_9STRA) HSP 1 Score: 214 bits (544), Expect = 8.840e-58 Identity = 117/234 (50.00%), Postives = 157/234 (67.09%), Query Frame = 3
Query: 615 YYALSKKGGYAYGFYASSFVLLPNLVTAVVLFYGGQLVMQGEITGGKVVSFMIYLTSLSDGFNDMASIFSSMTQAVGAADKVFELISREPKGATPTGTPPPAEMGMRSGPDAIAAAEAAAAGEKPDFCLGAVELRNVDFEYPSRPGRRILDGVSFNAAAGQVLALVGPSGGGKSSCIALLENLYHPSRGQVMLDGLAVHKYDHHWLHRNISIVGQEPTLYARSIRENIIYGLEG 1316
Y ++ K AY YA+ LP LVTA+V+FYGG LV G ++ G++VSF++YL SLSD F+ + IFSS+TQAVGAADKVFEL+ R+ + P G+ + + + G +P+ C G V L++V+ YP+RP RR+L G+S G ++ALVGPSGGGKSS I+L++NLY S G+VMLD + VH+Y WL +ISIV QEPTL+ARSIR NI+YGLEG
Sbjct: 520 YLEMTFKSAVAYCGYATVSTSLPQLVTALVVFYGGLLVRNGSLSSGELVSFLLYLQSLSDAFSSIGYIFSSLTQAVGAADKVFELMHRDRR-VIPQTMDSNNNNGVTNQSSLVQ--KVRVTGVEPNECKGEVTLQDVEMHYPARPNRRVLRGMSLTVPPGSIVALVGPSGGGKSSIISLVQNLYSQSSGKVMLDNIDVHEYSPRWLSHHISIVQQEPTLFARSIRRNIMYGLEG 750
BLAST of mRNA_S-firma_F_contig10072.143.1 vs. uniprot
Match: A0A7S2KWJ3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KWJ3_9STRA) HSP 1 Score: 206 bits (524), Expect = 1.030e-55 Identity = 116/242 (47.93%), Postives = 157/242 (64.88%), Query Frame = 3
Query: 615 YYALSKKGGYAYGFYASSFVLLPNLVTAVVLFYGGQLVMQ----GEITGGKVVSFMIYLTSLSDGFNDMASIFSSMTQAVGAADKVFELISREPKGATP-TGTPPPAEMGMRSGPDA---IAAAEAAAAGEKPDFCLGAVELRNVDFEYPSRPGRRILDGVSFNAAAGQVLALVGPSGGGKSSCIALLENLYHPSRGQVMLDGLAVHKYDHHWLHRNISIVGQEPTLYARSIRENIIYGLEG 1316
Y L+ + AY Y +S LP LV A+VLFYGG LV+ I+ G++VSF +YL+SLSD FN M +IFSS+T A+GAADKVFE++ R+P P +G+ + G S P++ + G P C G V L +D YP+RP R++LDG++ A G V ALVGPSGGGKSS ++L+++LY +RG V +DG V +H WL R++S+V QEPTLYARSI+ NI+YGLEG
Sbjct: 341 YLKLNARAAVAYVGYMTSITTLPLLVNAMVLFYGGLLVLSQNSDDHISSGQLVSFFLYLSSLSDAFNSMGNIFSSLTTAIGAADKVFEMMYRKPLYKKPASGSSSGDDGGELSLPNSGNPTTTCKMLHQGINPSDCAGEVRLNGIDMFYPARPTRKVLDGMTLTAPRGTVCALVGPSGGGKSSIVSLIQHLYEQNRGTVTIDGHDVRDLNHLWLSRHVSVVSQEPTLYARSIKRNIMYGLEG 582
BLAST of mRNA_S-firma_F_contig10072.143.1 vs. uniprot
Match: A0A1Z5KDK8_FISSO (ATP-binding cassette, subfamily B (MDR/TAP), member 9 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDK8_FISSO) HSP 1 Score: 206 bits (524), Expect = 5.130e-55 Identity = 111/239 (46.44%), Postives = 152/239 (63.60%), Query Frame = 3
Query: 615 YYALSKKGGYAYGFYASSFVLLPNLVTAVVLFYGGQLVMQGEITGGKVVSFMIYLTSLSDGFNDMASIFSSMTQAVGAADKVFELISREPKGATPTGTPPPAEMGMRSGPDAIAAAEAAAAGEK-----PDFCLGAVELRNVDFEYPSRPGRRILDGVSFNAAAGQVLALVGPSGGGKSSCIALLENLYHPSRGQVMLDGLAVHKYDHHWLHRNISIVGQEPTLYARSIRENIIYGLEG 1316
Y L+ + +AY +A LP LV AVV+FYGG +V +IT G++VSF++YL SLSD M +F S+TQAVGAADKVFEL++R+PK P+ T P E S + ++ P+ G +E ++V YPSRP +R+L+G+SF G ++ALVG SGGGKSS I+LL + Y GQ++ DG+A+H+ WL RN+SIV QEPTL+ RSI+ NI+YGLEG
Sbjct: 506 YLTLNMRSSFAYCGFACLTTSLPELVFAVVVFYGGLMVRNEDITSGQLVSFLLYLQSLSDAIASMGWVFGSLTQAVGAADKVFELLNRQPKVTPPSTTRPIMEAERHSRAHNLQLGTFKTTNQRLQGIVPESARGQIEFKDVTLYYPSRPQKRVLNGISFKVEPGSIVALVGESGGGKSSIISLLLHHYEQQSGQILFDGIAIHELQAAWLCRNVSIVSQEPTLFGRSIKRNIMYGLEG 744 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10072.143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10072.143.1 >prot_S-firma_F_contig10072.143.1 ID=prot_S-firma_F_contig10072.143.1|Name=mRNA_S-firma_F_contig10072.143.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=231bp MIDNVVERGDKHEFHRSTLYLVLAAVACATFSGIRGCIFTIVGARVNVRVback to top mRNA from alignment at S-firma_F_contig10072:449..5162+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10072.143.1 ID=mRNA_S-firma_F_contig10072.143.1|Name=mRNA_S-firma_F_contig10072.143.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4714bp|location=Sequence derived from alignment at S-firma_F_contig10072:449..5162+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10072:449..5162+ >mRNA_S-firma_F_contig10072.143.1 ID=mRNA_S-firma_F_contig10072.143.1|Name=mRNA_S-firma_F_contig10072.143.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1386bp|location=Sequence derived from alignment at S-firma_F_contig10072:449..5162+ (Sphaerotrichia firma ET2_F female)back to top |