mRNA_S-firma_F_contig1101.1354.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1101.1354.1
Unique NamemRNA_S-firma_F_contig1101.1354.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: D7G6D3_ECTSI (DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6D3_ECTSI)

HSP 1 Score: 453 bits (1165), Expect = 1.070e-149
Identity = 225/226 (99.56%), Postives = 225/226 (99.56%), Query Frame = 1 
Query:    1 VISELLQNRMDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPNAAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKTLCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW 678
            VISELLQNRMDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPNAAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKTLCAHCRP EGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW
Sbjct:  872 VISELLQNRMDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPNAAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKTLCAHCRPKEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW 1097
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BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: A0A7S3XMQ3_HETAK (DNA-directed DNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMQ3_HETAK)

HSP 1 Score: 352 bits (902), Expect = 4.930e-119
Identity = 173/237 (73.00%), Postives = 194/237 (81.86%), Query Frame = 1 
Query:    1 VISELLQNRMDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPN-----------AAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKTLCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW 678
            +I++LLQN+MDIS LVITKSLG+ ADS+ Y AKQAHVELAMRM+KRDPG+APN           AAKGA AYE+SEDPVYVLEN+LPID +YYL  QLS PL+R+FEPIIDNP AL  G HTRSI K TP A+AGGIMMFAVKKL CMGCKAPISEKEKT C HCRP E + YS KL E+N  + LFS+LWTQCQ CQGS HQDVLCSNRDCPIFYKRKKVQ DLK+AQD LD ++W
Sbjct:  123 IIADLLQNKMDISYLVITKSLGRGADSDDYAAKQAHVELAMRMRKRDPGSAPNVGDRVPYVIVKAAKGAPAYEKSEDPVYVLENSLPIDVQYYLDRQLSGPLTRIFEPIIDNPQALFKGAHTRSIAKPTPKAKAGGIMMFAVKKLSCMGCKAPISEKEKTFCVHCRPREAEFYSKKLTELNACESLFSQLWTQCQRCQGSLHQDVLCSNRDCPIFYKRKKVQKDLKDAQDALDKYSW 359
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BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: K8Z648_NANGC (DNA polymerase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z648_NANGC)

HSP 1 Score: 348 bits (894), Expect = 5.540e-115
Identity = 175/238 (73.53%), Postives = 195/238 (81.93%), Query Frame = 1 
Query:    1 VISELLQNRMDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPN-----------AAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEK-TLCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW 678
            VI+ELLQN+MDISLLVITK+LGKSAD  GY AKQAHVELAMRMKKRDPGTAPN           A KGA AYERSEDPVYVLEN +PIDT+YYL NQLS PL+RLFEPIIDNP +LL G+HTRSI + TPTA+AGGIMMFAVKKLKC+GCK PI E EK TLC HC P E +IY+ K  EV   + +F++LWTQCQ CQGSFHQD+LCSNRDCPIFYKRKKVQ DL +AQD LD FA+
Sbjct:  332 VIAELLQNKMDISLLVITKALGKSADESGYAAKQAHVELAMRMKKRDPGTAPNVGDRVAYVIIQAGKGAPAYERSEDPVYVLENRIPIDTDYYLQNQLSNPLTRLFEPIIDNPESLLSGDHTRSIARPTPTAKAGGIMMFAVKKLKCLGCKTPIPETEKSTLCVHCAPREAEIYTQKALEVAGHEGVFAKLWTQCQRCQGSFHQDILCSNRDCPIFYKRKKVQKDLADAQDALDRFAF 569
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BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: A0A4D9CSP3_9STRA (DNA polymerase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSP3_9STRA)

HSP 1 Score: 350 bits (899), Expect = 7.890e-110
Identity = 176/238 (73.95%), Postives = 196/238 (82.35%), Query Frame = 1 
Query:    1 VISELLQNRMDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPN-----------AAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEK-TLCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW 678
            VI+ELLQN+MDISLLVITK+LGKSAD  GY AKQAHVELAMRMKKRDPGTAPN           A KGA AYERSEDPVYVLEN +PIDT+YYL NQLS PL+RLFEPIIDNP +LL G+HTRSI + TPTA+AGGIMMFAVKKLKC+GCK PISE EK TLC HC P E +IY+ K  EV   + +F++LWTQCQ CQGSFHQD+LCSNRDCPIFYKRKKVQ DL +AQD LD FA+
Sbjct:  973 VIAELLQNKMDISLLVITKALGKSADESGYAAKQAHVELAMRMKKRDPGTAPNVGDRVAYVIIQAGKGAPAYERSEDPVYVLENRIPIDTDYYLQNQLSNPLTRLFEPIIDNPESLLSGDHTRSIARPTPTAKAGGIMMFAVKKLKCLGCKTPISETEKSTLCVHCAPREAEIYTQKALEVAGHEGVFAKLWTQCQRCQGSFHQDILCSNRDCPIFYKRKKVQKDLADAQDALDRFAF 1210
[Close]
BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: A0A835YQA9_9STRA (DNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA9_9STRA)

HSP 1 Score: 337 bits (864), Expect = 5.160e-106
Identity = 165/238 (69.33%), Postives = 195/238 (81.93%), Query Frame = 1 
Query:    1 VISELLQNRMDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPNAA-----------KGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFA-VKKLKCMGCKAPISEKEKTLCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW 678
            VIS+LLQ+RMDISLLVITK+L KSAD EGYTAKQAHVELAMRM++RDPGTAPN             KG  AYERSEDPVYVLENNLPIDT YYLTNQL+KPL+RLFEPII+NP  LL G HTR++VKKTP AR GGI+MFA VKK KCM CK P+ + E TLC HC P E +IY  K  E+N+Q+++++RLWTQCQ+CQG+ ++DV+CSN+DCPIFYKRKK QIDL+EAQD ++ FAW
Sbjct:  783 VISQLLQDRMDISLLVITKALAKSADMEGYTAKQAHVELAMRMRRRDPGTAPNVGDRVPYVIIEKGKGTPAYERSEDPVYVLENNLPIDTGYYLTNQLAKPLTRLFEPIIENPQTLLAGAHTRTVVKKTPAARKGGIVMFATVKKNKCMACKTPMDDGEGTLCKHCAPREAEIYQQKQAELNKQEVMYARLWTQCQNCQGARYEDVICSNQDCPIFYKRKKAQIDLREAQDVINRFAW 1020
[Close]
BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: A0A7S2MCL7_9STRA (DNA-directed DNA polymerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MCL7_9STRA)

HSP 1 Score: 313 bits (802), Expect = 3.600e-104
Identity = 156/239 (65.27%), Postives = 184/239 (76.99%), Query Frame = 1 
Query:    4 ISELLQNRMDISLLVITKSLGKS---ADSEGYTAKQAHVELAMRMKKRDPGTAPNA-----------AKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKTLCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW 678
            I++LLQN++DISLLV++KSL KS   +D   Y AKQAHVELA+RMKKRD G+AP             AKGA  YE+SEDPVY LENNLP+D EYYL NQLSKPL+R+FEPI+DN + LL G+HTR + K TPTAR GGIMMFAVK L+C+GC+ PIS+KEKTLC  C P EG+IY  K  +V+E +L FSRLWT+CQ CQGS H DVLCSN DCPIFYKRKKVQ DLK+AQ  +D F W
Sbjct:   99 IADLLQNKLDISLLVVSKSLSKSMDDSDKNTYKAKQAHVELALRMKKRDAGSAPQMGDRVPYVIIQKAKGAPMYEKSEDPVYALENNLPLDVEYYLHNQLSKPLTRIFEPIVDNVNTLLKGDHTRVVCKPTPTARKGGIMMFAVKTLQCLGCRTPISDKEKTLCRKCVPLEGEIYMQKAAKVSELELSFSRLWTECQSCQGSMHDDVLCSNCDCPIFYKRKKVQKDLKDAQGLVDRFEW 337
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BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: A0A7S2UT84_9STRA (DNA-directed DNA polymerase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT84_9STRA)

HSP 1 Score: 299 bits (765), Expect = 1.220e-97
Identity = 148/216 (68.52%), Postives = 175/216 (81.02%), Query Frame = 1 
Query:    1 VISELLQNRMDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPN-----------AAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKE-----KTLCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRD 600
            +IS+LLQN+MDISLLVITK+LGKS DSEGY AKQAHVELAMRMKKRDPG+AP            AAKGA AYE+SEDPVYVL++NLPIDT+YY+ +QLSKPL+R+FEPIIDNP AL  G+HTR++ + TPTARAGGIMMFAVKKLKC+GCK P+S K+     KTLC HCR  E  IY  KL+++   + +F+RLWTQCQ CQGS HQDVLC+NRD
Sbjct:  189 IISDLLQNKMDISLLVITKALGKSGDSEGYAAKQAHVELAMRMKKRDPGSAPQVGDRVAYVIIQAAKGAPAYEKSEDPVYVLDHNLPIDTDYYVHHQLSKPLTRIFEPIIDNPQALFRGDHTRTVARPTPTARAGGIMMFAVKKLKCLGCKTPLSAKDEREGQKTLCEHCRAKEAGIYRQKLKDLTNHEDVFTRLWTQCQRCQGSLHQDVLCTNRD 404
[Close]
BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: A0A812URB4_SYMMI (DNA polymerase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812URB4_SYMMI)

HSP 1 Score: 301 bits (771), Expect = 1.330e-95
Identity = 151/231 (65.37%), Postives = 177/231 (76.62%), Query Frame = 1 
Query:    1 VISELLQNRMDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPNAAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKT-----LCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW 678
            +IS+LLQN++DIS+LVI+KSLGKSAD  GY+AKQA                    KGA AYE+SEDPVYVLE+NLPIDTEYYLTNQLS P++R+FEPII NP +LL G+HTR  +K TPTA+AGGIMMFAVK LKCM CK PI  K+       LC +C   EG+IY  +L EVN+QQ +F+RLWT+CQ CQGSFHQ+VLCSNRDCPIFYKRKKVQIDLK AQD LD F+W
Sbjct:  438 IISDLLQNKLDISMLVISKSLGKSADDAGYSAKQA-------------------GKGAPAYEKSEDPVYVLEHNLPIDTEYYLTNQLSNPITRIFEPIIPNPQSLLTGDHTRIRIKPTPTAKAGGIMMFAVKTLKCMACKTPIPNKDGVEAATPLCKNCAGKEGEIYLQRLAEVNDQQHVFNRLWTECQHCQGSFHQEVLCSNRDCPIFYKRKKVQIDLKAAQDALDRFSW 649
[Close]
BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: F0Y3Y2_AURAN (DNA polymerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3Y2_AURAN)

HSP 1 Score: 296 bits (758), Expect = 2.010e-90
Identity = 147/234 (62.82%), Postives = 174/234 (74.36%), Query Frame = 1 
Query:    4 ISELLQNRMDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPN-----------AAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKTLCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLF 672
            I +LLQN++DISLLVITKSL K ADS+ Y AK  H ELA RM+ RDPGTAPN           A KG A Y++SEDPVYVLENNLPID  YYL NQLSKPL+R+FEPII N S LLHG+HTR + K TP AR GGIMMFA K+L+C+GCKA I E   T+C HC+P E +I+  ++R+VN  +  F++LWT CQ CQGS HQDVLCSN DCP+FYKRKKVQ DL++ Q  L  F
Sbjct:  822 IGDLLQNKIDISLLVITKSLSKEADSKDYKAKSGHAELAKRMRARDPGTAPNVGDRVPYVIVQAPKGTATYDKSEDPVYVLENNLPIDASYYLENQLSKPLTRIFEPIIPNTSNLLHGDHTRVVAKPTPVARKGGIMMFAKKQLQCLGCKAKIDEG--TVCDHCKPREPEIFLKRVRDVNAHERTFAKLWTNCQRCQGSLHQDVLCSNSDCPVFYKRKKVQTDLRDTQVHLARF 1053
[Close]
BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: A0A7C9EQW3_OPUST (DNA-directed DNA polymerase n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A7C9EQW3_OPUST)

HSP 1 Score: 270 bits (689), Expect = 8.880e-88
Identity = 140/237 (59.07%), Postives = 172/237 (72.57%), Query Frame = 1 
Query:    4 ISELLQNRMDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPN-----------AAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSA-LLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKTLCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW 678
            IS+LL NR+D+SLLVITK L K+ D   Y  K AHVELA RM+KRD  TAP            AAKGA AYERSEDP+YVLENN+PID +YYL NQ+SKP+ R+FEPI+ N S  LLHG HTRSI   TP+    GIM FA K+L C+GCKA IS   KTLC+HC+  E ++Y   +  V+E + LF +LWTQCQ+CQGS HQDVLC++RDCPIFY+RKK Q D+ EA+ QLD +++
Sbjct:   52 ISDLLMNRLDLSLLVITKGLTKTGDD--YEVKAAHVELAERMRKRDAATAPGVGDRVPYIIVKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSN--SGIMKFAKKQLTCIGCKALISGSNKTLCSHCKGREAELYCKTVANVSELEALFGKLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKVQLDRWSF 284
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6D3_ECTSI1.070e-14999.56DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A7S3XMQ3_HETAK4.930e-11973.00DNA-directed DNA polymerase n=1 Tax=Heterosigma ak... [more]
K8Z648_NANGC5.540e-11573.53DNA polymerase n=1 Tax=Nannochloropsis gaditana (s... [more]
A0A4D9CSP3_9STRA7.890e-11073.95DNA polymerase n=3 Tax=Monodopsidaceae TaxID=42507... [more]
A0A835YQA9_9STRA5.160e-10669.33DNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A7S2MCL7_9STRA3.600e-10465.27DNA-directed DNA polymerase n=1 Tax=Dictyocha spec... [more]
A0A7S2UT84_9STRA1.220e-9768.52DNA-directed DNA polymerase (Fragment) n=1 Tax=Fib... [more]
A0A812URB4_SYMMI1.330e-9565.37DNA polymerase n=1 Tax=Symbiodinium microadriaticu... [more]
F0Y3Y2_AURAN2.010e-9062.82DNA polymerase n=1 Tax=Aureococcus anophagefferens... [more]
A0A7C9EQW3_OPUST8.880e-8859.07DNA-directed DNA polymerase n=4 Tax=Mesangiosperma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1101contigS-firma_F_contig1101:7113..10158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G6D3
PFAMsDNA_pol_B,DNA_pol_B_exo1,zf-C4pol
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02327
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440,map05166
KEGG ModuleM00262
GOsGO:0000228,GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006297,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008408,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0018130,GO:0019438,GO:0030894,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0043625,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Evalue3.71e-145
EggNOG OGsCOG0417@1|root,KOG0969@2759|Eukaryota
EC2.7.7.7
DescriptionDNA replication proofreading
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons5
Model size681
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1101.1354.1prot_S-firma_F_contig1101.1354.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1101 7113..10131 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.8882294-CDS-S-firma_F_contig1101:7112..72891622815648.8882294-CDS-S-firma_F_contig1101:7112..7289Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 7113..7289 -
1696949477.9356277-CDS-S-firma_F_contig1101:7112..72891696949477.9356277-CDS-S-firma_F_contig1101:7112..7289Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 7113..7289 -
1622815648.899313-CDS-S-firma_F_contig1101:7512..76111622815648.899313-CDS-S-firma_F_contig1101:7512..7611Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 7513..7611 -
1696949477.9477239-CDS-S-firma_F_contig1101:7512..76111696949477.9477239-CDS-S-firma_F_contig1101:7512..7611Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 7513..7611 -
1622815648.9096565-CDS-S-firma_F_contig1101:9318..94351622815648.9096565-CDS-S-firma_F_contig1101:9318..9435Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 9319..9435 -
1696949477.9565816-CDS-S-firma_F_contig1101:9318..94351696949477.9565816-CDS-S-firma_F_contig1101:9318..9435Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 9319..9435 -
1622815648.9245768-CDS-S-firma_F_contig1101:9622..97511622815648.9245768-CDS-S-firma_F_contig1101:9622..9751Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 9623..9751 -
1696949477.9655194-CDS-S-firma_F_contig1101:9622..97511696949477.9655194-CDS-S-firma_F_contig1101:9622..9751Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 9623..9751 -
1622815648.935339-CDS-S-firma_F_contig1101:9999..101311622815648.935339-CDS-S-firma_F_contig1101:9999..10131Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 10000..10131 -
1696949477.9750745-CDS-S-firma_F_contig1101:9999..101311696949477.9750745-CDS-S-firma_F_contig1101:9999..10131Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 10000..10131 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.9466121-UTR-S-firma_F_contig1101:10131..101581622815648.9466121-UTR-S-firma_F_contig1101:10131..10158Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1101 10132..10158 -
1696949477.9862118-UTR-S-firma_F_contig1101:10131..101581696949477.9862118-UTR-S-firma_F_contig1101:10131..10158Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1101 10132..10158 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1101.1354.1

>prot_S-firma_F_contig1101.1354.1 ID=prot_S-firma_F_contig1101.1354.1|Name=mRNA_S-firma_F_contig1101.1354.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=218bp
MDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPNAAKGAA
AYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGE
HTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKTLCAHCRPAEG
DIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKK
VQIDLKEAQDQLDLFAW*
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mRNA from alignment at S-firma_F_contig1101:7113..10158-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1101.1354.1 ID=mRNA_S-firma_F_contig1101.1354.1|Name=mRNA_S-firma_F_contig1101.1354.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3046bp|location=Sequence derived from alignment at S-firma_F_contig1101:7113..10158- (Sphaerotrichia firma ET2_F female)
GTCATCTCCGAGCTCCTCCAGAACCGGATGGACATCTCCCTCCTCGTCAT
CACCAAGTCGCTGGGAAAGAGCGCCGACAGCGAAGGCTACACCGCCAAGC
AGGCGCATGTGGAGCTTGCGATGCGCATGAAGAAGCGCGATCCAGGAACA
GCCCCCAACGTGGGAGATCGCGTGCCGTACGTGATCATCCAGGTACGAAC
TGTCCAACCATTGATCCATACATGCACACTGTCTTCGTTCCTCAAACATT
CGTACATGCGTCACTGAGACGTTGGTGAAGACAGATAGGACACGCGGTGG
CGTGCTGAAAGTGTGCGTTTTGCTCTCTCGGTACGGCCTACACGCCCGTT
GTTCCTGGCTTACTCTATGCCCGTTGGCGCCAAAGCTCACCCGTTCCTTG
ATGTTAGGCTGCCAAGGGAGCTGCAGCTTACGAGCGCAGCGAGGACCCGG
TCTATGTTCTGGAGAACAACTTGCCGATCGACACCGAGTACTACCTCACC
AACCAGCTCAGCAAGCCGCTTAGCCGTCTATTTGAGGTGCGTCTTGCGTG
AGGCTCGGCATTACTCGAATCCGGTTGTATTAGCTTGGACTGGTGATGGG
ACAGATGGCTCCAAGTTTGAAATGAAATGTTTTAAGGCGTGCGTGCAAAA
TTCAGAGCACGTGCCCGAGCCCCAGCCGGTGTTTCGTTCTTCACAATTTT
GCCTCTTTTCCGTTTGTAAACAGCCCATCATCGACAACCCATCTGCTCTC
TTGCACGGCGAGCACACGCGATCAATCGTGAAGAAGACTCCAACAGCACG
GGCTGGTGGTATCATGATGTTCGCGGTCAAGAAGCTCAAGGTGATGACGA
TAGGACGCGGTGCACGGCCGAATGCAGTAGCGTGCGACCCGAAATACATC
TGTATACAGATTCCGTAGCCGTGGCCGTGGCAAGGTCTGGGCTGTTAGCC
AGCCAAGGCGTGGGCGTGGCGGGTTGTTCGCCAGGCAAGACGTGGACGTA
GCGGGCTGTTGACCACGTGGCGGGTTGTTGGCCCGCCGTGCACGTCAGTG
ATTTTGTGTCTTGCTGCGGTGTGCTGCAGTTTCGTGGGTCTATCAAATAC
ACTACTGTACGACACCGGTAGGACGCAGTTTTCTGGGTCTACATAGCTAA
CCAACAGCAGCATGTCTAAGCAGCTTTTACGAGAGGTGCCTTGAAAAACC
TCAAAGGCTACGCGCCAGGTTTTCACCAGCATACAAGTAGCTACATAGCT
TTCGGCGGAGTTCCGCCAGTTTTCTGGCTCTTAACCCCTCTGGGACTAGG
CTCCTCAGCACCGGCATGTCGAGCAGCCTGCGCTCGCACAGGACTGTAAA
ATAAATGGGGTCGGCACAGCGTGTGCGCAGCGATTTCTGGGCGAAAAAGA
GACTTCTCTAGGAGAAGTCGAGCGCTCAGCGAAACACGCACCGCGTCCGT
ATCATCGACCGGCGACAGGCTGAGGAGGTCCCTTGGTGCACTAGAAAGGT
CCCTCGGCCCTCCAAACATCACTTCTGTTCGTTCCATGTTTTTTTTCACC
CTTTCAGATTCGCCAGGGCCCCGACAGCGGTCAAAAATCAGTACACTTTC
AAATGCTCAATCCAAATGCTCAATAAAAAAAAAAATGGTGCCGAAGTCCC
CTACGGGCATAAGCTACTTCTGTACTTCTCTGCTAAAAACTAACAACGTC
CCTCCAAAGCCGCCATCTTGTAAGGCGTTCTTCATAAATAGGCGCACAGC
AAAATAGACACCATCAACTGTGTACACAACCAACCAACCAGATCGATCGA
AACCGGTTCTTGGCTGATGCTGTAGTAGACGAAAGTCACATGATGTGTTT
TGGCGCTGGGTGCTGATGCGTGTGCTGTGGTGCTGTTGAATGGCGGTGCG
TGAGATGTGTGGATGAAGGAGAAGAGCAAAATGTGCATATTTTCATATTT
TCGTCAAATGCAAAAGTCGCAAAAACAACAACGCAGCAGCGGCGGCGGCA
GCAGTGACAAGCCTTGTGGAAACGCAGCACAGCGTTATCACCCCTCTCTG
CTGCTGCTGTACAACCCCAGGCAGAGGCATTTCGATCGCACACATGACGC
CCCGATGTGCCAAGTAGCCCGGGTCCGCAGCAAAATCGTTGTCTGTTGGG
GTCAGCTCAATAAAACCCCCTTGAAGTCCCACGGGGTTAATTTAAGTGTT
GTGGTGATTCTTCCCGCGATCCCTTCTTACCACTGTTTTCTTTGTTTCTT
TGATCACTACGGCACTCTTTCTCCTTTGTACCTTCGTACGTTGCTCACTA
TAACGGCGTTACACTCATCACTTTTTTTGGTCTCTTGGTTCACCCCCTGG
ATTGTGTTGCTTCATCTTACGCATGGGACCACGTCCGAATGGGGATCTTG
TATGAATTTGACTAAATCGTACCTCGCACCGCTTCTGCCTTGTGCTGTAG
TGAGGGCTGTGTTGCTGATTCCCTCAACAACTCAGCCCCCCAAATTCTCA
CTTGCCCCCCCCCTCGTTCTCTTGGTATTGATTGCTGGTCGTCACAGTGC
ATGGGATGCAAGGCGCCTATCAGCGAGAAGGAGAAGACGCTTTGCGCGCA
CTGCAGGCCAGCGGAGGGCGACATCTACTCGGCCAAACTGCGCGAGGTTG
GGGTTCTTACGTTGCACTTCGATTAGATTGTTACGCATCTCTCGCGCTTT
CTCCACTGGTGCTGCCACAGCCTGCGATGCATCGCTACTGCTGTAGTATC
GCCGATACTGCGGATCCTCGTGCTGAGGTTTTCATCTACCATACTTCGAA
TGTTTACAAAAGGTGAAGTACTTCGTAATGTACTGATGCTTCCGTCGTCA
TCCACGTCGTACCCTATAGGTAAACGAGCAGCAACTGCTTTTCAGCCGCT
TGTGGACTCAGTGCCAAGACTGCCAAGGCTCTTTCCACCAGGACGTCCTG
TGCTCCAACAGGGATTGCCCCATTTTCTACAAGCGCAAGAAGGTTCAGAT
TGACTTGAAGGAGGCCCAAGACCAGCTAGACCTATTTGCTTGGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig1101:7113..10158-

>mRNA_S-firma_F_contig1101.1354.1 ID=mRNA_S-firma_F_contig1101.1354.1|Name=mRNA_S-firma_F_contig1101.1354.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1308bp|location=Sequence derived from alignment at S-firma_F_contig1101:7113..10158- (Sphaerotrichia firma ET2_F female)
ATGGACATCTCCCTCCTCGTCATCACCAAGTCGCTGGGAAAGAGCGCCGA
CAGCGAAGGCTACACCGCCAAGCAGGCGCATGTGGAGCTTGCGATGCGCA
TGAAGAAGCGCGATCCAGGAACAGCCCCCAACATGGACATCTCCCTCCTC
GTCATCACCAAGTCGCTGGGAAAGAGCGCCGACAGCGAAGGCTACACCGC
CAAGCAGGCGCATGTGGAGCTTGCGATGCGCATGAAGAAGCGCGATCCAG
GAACAGCCCCCAACGCTGCCAAGGGAGCTGCAGCTTACGAGCGCAGCGAG
GACCCGGTCTATGTTCTGGAGAACAACTTGCCGATCGACACCGAGTACTA
CCTCACCAACCAGCTCAGCAAGCCGCTTAGCCGTCTATTTGAGGCTGCCA
AGGGAGCTGCAGCTTACGAGCGCAGCGAGGACCCGGTCTATGTTCTGGAG
AACAACTTGCCGATCGACACCGAGTACTACCTCACCAACCAGCTCAGCAA
GCCGCTTAGCCGTCTATTTGAGCCCATCATCGACAACCCATCTGCTCTCT
TGCACGGCGAGCACACGCGATCAATCGTGAAGAAGACTCCAACAGCACGG
GCTGGTGGTATCATGATGTTCGCGGTCAAGAAGCTCAAGCCCATCATCGA
CAACCCATCTGCTCTCTTGCACGGCGAGCACACGCGATCAATCGTGAAGA
AGACTCCAACAGCACGGGCTGGTGGTATCATGATGTTCGCGGTCAAGAAG
CTCAAGTGCATGGGATGCAAGGCGCCTATCAGCGAGAAGGAGAAGACGCT
TTGCGCGCACTGCAGGCCAGCGGAGGGCGACATCTACTCGGCCAAACTGC
GCGAGTGCATGGGATGCAAGGCGCCTATCAGCGAGAAGGAGAAGACGCTT
TGCGCGCACTGCAGGCCAGCGGAGGGCGACATCTACTCGGCCAAACTGCG
CGAGGTAAACGAGCAGCAACTGCTTTTCAGCCGCTTGTGGACTCAGTGCC
AAGACTGCCAAGGCTCTTTCCACCAGGACGTCCTGTGCTCCAACAGGGAT
TGCCCCATTTTCTACAAGCGCAAGAAGGTTCAGATTGACTTGAAGGAGGC
CCAAGACCAGCTAGACCTATTTGCTTGGTAGGTAAACGAGCAGCAACTGC
TTTTCAGCCGCTTGTGGACTCAGTGCCAAGACTGCCAAGGCTCTTTCCAC
CAGGACGTCCTGTGCTCCAACAGGGATTGCCCCATTTTCTACAAGCGCAA
GAAGGTTCAGATTGACTTGAAGGAGGCCCAAGACCAGCTAGACCTATTTG
CTTGGTAG
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