prot_S-firma_F_contig1101.1354.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1101.1354.1
Unique Nameprot_S-firma_F_contig1101.1354.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length218
Homology
BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: D7G6D3_ECTSI (DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6D3_ECTSI)

HSP 1 Score: 439 bits (1128), Expect = 2.260e-144
Identity = 216/217 (99.54%), Postives = 216/217 (99.54%), Query Frame = 0
Query:    1 MDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPNAAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKTLCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW 217
            MDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPNAAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKTLCAHCRP EGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW
Sbjct:  881 MDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPNAAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKTLCAHCRPKEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW 1097          
BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: A0A7S3XMQ3_HETAK (DNA-directed DNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMQ3_HETAK)

HSP 1 Score: 341 bits (875), Expect = 4.340e-115
Identity = 168/228 (73.68%), Postives = 185/228 (81.14%), Query Frame = 0
Query:    1 MDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPN-----------AAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKTLCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW 217
            MDIS LVITKSLG+ ADS+ Y AKQAHVELAMRM+KRDPG+APN           AAKGA AYE+SEDPVYVLEN+LPID +YYL  QLS PL+R+FEPIIDNP AL  G HTRSI K TP A+AGGIMMFAVKKL CMGCKAPISEKEKT C HCRP E + YS KL E+N  + LFS+LWTQCQ CQGS HQDVLCSNRDCPIFYKRKKVQ DLK+AQD LD ++W
Sbjct:  132 MDISYLVITKSLGRGADSDDYAAKQAHVELAMRMRKRDPGSAPNVGDRVPYVIVKAAKGAPAYEKSEDPVYVLENSLPIDVQYYLDRQLSGPLTRIFEPIIDNPQALFKGAHTRSIAKPTPKAKAGGIMMFAVKKLSCMGCKAPISEKEKTFCVHCRPREAEFYSKKLTELNACESLFSQLWTQCQRCQGSLHQDVLCSNRDCPIFYKRKKVQKDLKDAQDALDKYSW 359          
BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: K8Z648_NANGC (DNA polymerase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z648_NANGC)

HSP 1 Score: 337 bits (863), Expect = 1.810e-110
Identity = 168/229 (73.36%), Postives = 186/229 (81.22%), Query Frame = 0
Query:    1 MDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPN-----------AAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEK-TLCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW 217
            MDISLLVITK+LGKSAD  GY AKQAHVELAMRMKKRDPGTAPN           A KGA AYERSEDPVYVLEN +PIDT+YYL NQLS PL+RLFEPIIDNP +LL G+HTRSI + TPTA+AGGIMMFAVKKLKC+GCK PI E EK TLC HC P E +IY+ K  EV   + +F++LWTQCQ CQGSFHQD+LCSNRDCPIFYKRKKVQ DL +AQD LD FA+
Sbjct:  341 MDISLLVITKALGKSADESGYAAKQAHVELAMRMKKRDPGTAPNVGDRVAYVIIQAGKGAPAYERSEDPVYVLENRIPIDTDYYLQNQLSNPLTRLFEPIIDNPESLLSGDHTRSIARPTPTAKAGGIMMFAVKKLKCLGCKTPIPETEKSTLCVHCAPREAEIYTQKALEVAGHEGVFAKLWTQCQRCQGSFHQDILCSNRDCPIFYKRKKVQKDLADAQDALDRFAF 569          
BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: A0A4D9CSP3_9STRA (DNA polymerase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSP3_9STRA)

HSP 1 Score: 338 bits (868), Expect = 1.580e-105
Identity = 169/229 (73.80%), Postives = 187/229 (81.66%), Query Frame = 0
Query:    1 MDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPN-----------AAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEK-TLCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW 217
            MDISLLVITK+LGKSAD  GY AKQAHVELAMRMKKRDPGTAPN           A KGA AYERSEDPVYVLEN +PIDT+YYL NQLS PL+RLFEPIIDNP +LL G+HTRSI + TPTA+AGGIMMFAVKKLKC+GCK PISE EK TLC HC P E +IY+ K  EV   + +F++LWTQCQ CQGSFHQD+LCSNRDCPIFYKRKKVQ DL +AQD LD FA+
Sbjct:  982 MDISLLVITKALGKSADESGYAAKQAHVELAMRMKKRDPGTAPNVGDRVAYVIIQAGKGAPAYERSEDPVYVLENRIPIDTDYYLQNQLSNPLTRLFEPIIDNPESLLSGDHTRSIARPTPTAKAGGIMMFAVKKLKCLGCKTPISETEKSTLCVHCAPREAEIYTQKALEVAGHEGVFAKLWTQCQRCQGSFHQDILCSNRDCPIFYKRKKVQKDLADAQDALDRFAF 1210          
BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: A0A835YQA9_9STRA (DNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA9_9STRA)

HSP 1 Score: 326 bits (835), Expect = 6.100e-102
Identity = 158/229 (69.00%), Postives = 186/229 (81.22%), Query Frame = 0
Query:    1 MDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPNAA-----------KGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFA-VKKLKCMGCKAPISEKEKTLCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW 217
            MDISLLVITK+L KSAD EGYTAKQAHVELAMRM++RDPGTAPN             KG  AYERSEDPVYVLENNLPIDT YYLTNQL+KPL+RLFEPII+NP  LL G HTR++VKKTP AR GGI+MFA VKK KCM CK P+ + E TLC HC P E +IY  K  E+N+Q+++++RLWTQCQ+CQG+ ++DV+CSN+DCPIFYKRKK QIDL+EAQD ++ FAW
Sbjct:  792 MDISLLVITKALAKSADMEGYTAKQAHVELAMRMRRRDPGTAPNVGDRVPYVIIEKGKGTPAYERSEDPVYVLENNLPIDTGYYLTNQLAKPLTRLFEPIIENPQTLLAGAHTRTVVKKTPAARKGGIVMFATVKKNKCMACKTPMDDGEGTLCKHCAPREAEIYQQKQAELNKQEVMYARLWTQCQNCQGARYEDVICSNQDCPIFYKRKKAQIDLREAQDVINRFAW 1020          
BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: A0A7S2MCL7_9STRA (DNA-directed DNA polymerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MCL7_9STRA)

HSP 1 Score: 303 bits (777), Expect = 1.570e-100
Identity = 151/231 (65.37%), Postives = 176/231 (76.19%), Query Frame = 0
Query:    1 MDISLLVITKSLGKS---ADSEGYTAKQAHVELAMRMKKRDPGTAPNA-----------AKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKTLCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW 217
            +DISLLV++KSL KS   +D   Y AKQAHVELA+RMKKRD G+AP             AKGA  YE+SEDPVY LENNLP+D EYYL NQLSKPL+R+FEPI+DN + LL G+HTR + K TPTAR GGIMMFAVK L+C+GC+ PIS+KEKTLC  C P EG+IY  K  +V+E +L FSRLWT+CQ CQGS H DVLCSN DCPIFYKRKKVQ DLK+AQ  +D F W
Sbjct:  107 LDISLLVVSKSLSKSMDDSDKNTYKAKQAHVELALRMKKRDAGSAPQMGDRVPYVIIQKAKGAPMYEKSEDPVYALENNLPLDVEYYLHNQLSKPLTRIFEPIVDNVNTLLKGDHTRVVCKPTPTARKGGIMMFAVKTLQCLGCRTPISDKEKTLCRKCVPLEGEIYMQKAAKVSELELSFSRLWTECQSCQGSMHDDVLCSNCDCPIFYKRKKVQKDLKDAQGLVDRFEW 337          
BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: A0A7S2UT84_9STRA (DNA-directed DNA polymerase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT84_9STRA)

HSP 1 Score: 287 bits (735), Expect = 2.960e-93
Identity = 142/207 (68.60%), Postives = 166/207 (80.19%), Query Frame = 0
Query:    1 MDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPN-----------AAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKE-----KTLCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRD 191
            MDISLLVITK+LGKS DSEGY AKQAHVELAMRMKKRDPG+AP            AAKGA AYE+SEDPVYVL++NLPIDT+YY+ +QLSKPL+R+FEPIIDNP AL  G+HTR++ + TPTARAGGIMMFAVKKLKC+GCK P+S K+     KTLC HCR  E  IY  KL+++   + +F+RLWTQCQ CQGS HQDVLC+NRD
Sbjct:  198 MDISLLVITKALGKSGDSEGYAAKQAHVELAMRMKKRDPGSAPQVGDRVAYVIIQAAKGAPAYEKSEDPVYVLDHNLPIDTDYYVHHQLSKPLTRIFEPIIDNPQALFRGDHTRTVARPTPTARAGGIMMFAVKKLKCLGCKTPLSAKDEREGQKTLCEHCRAKEAGIYRQKLKDLTNHEDVFTRLWTQCQRCQGSLHQDVLCTNRD 404          
BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: A0A812URB4_SYMMI (DNA polymerase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812URB4_SYMMI)

HSP 1 Score: 290 bits (741), Expect = 2.780e-91
Identity = 145/222 (65.32%), Postives = 168/222 (75.68%), Query Frame = 0
Query:    1 MDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPNAAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKT-----LCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLFAW 217
            +DIS+LVI+KSLGKSAD  GY+AKQA                    KGA AYE+SEDPVYVLE+NLPIDTEYYLTNQLS P++R+FEPII NP +LL G+HTR  +K TPTA+AGGIMMFAVK LKCM CK PI  K+       LC +C   EG+IY  +L EVN+QQ +F+RLWT+CQ CQGSFHQ+VLCSNRDCPIFYKRKKVQIDLK AQD LD F+W
Sbjct:  447 LDISMLVISKSLGKSADDAGYSAKQA-------------------GKGAPAYEKSEDPVYVLEHNLPIDTEYYLTNQLSNPITRIFEPIIPNPQSLLTGDHTRIRIKPTPTAKAGGIMMFAVKTLKCMACKTPIPNKDGVEAATPLCKNCAGKEGEIYLQRLAEVNDQQHVFNRLWTECQHCQGSFHQEVLCSNRDCPIFYKRKKVQIDLKAAQDALDRFSW 649          
BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: F0Y3Y2_AURAN (DNA polymerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3Y2_AURAN)

HSP 1 Score: 287 bits (734), Expect = 3.880e-87
Identity = 142/226 (62.83%), Postives = 167/226 (73.89%), Query Frame = 0
Query:    1 MDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPN-----------AAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKTLCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLDLF 215
            +DISLLVITKSL K ADS+ Y AK  H ELA RM+ RDPGTAPN           A KG A Y++SEDPVYVLENNLPID  YYL NQLSKPL+R+FEPII N S LLHG+HTR + K TP AR GGIMMFA K+L+C+GCKA I E   T+C HC+P E +I+  ++R+VN  +  F++LWT CQ CQGS HQDVLCSN DCP+FYKRKKVQ DL++ Q  L  F
Sbjct:  830 IDISLLVITKSLSKEADSKDYKAKSGHAELAKRMRARDPGTAPNVGDRVPYVIVQAPKGTATYDKSEDPVYVLENNLPIDASYYLENQLSKPLTRIFEPIIPNTSNLLHGDHTRVVAKPTPVARKGGIMMFAKKQLQCLGCKAKIDEG--TVCDHCKPREPEIFLKRVRDVNAHERTFAKLWTNCQRCQGSLHQDVLCSNSDCPVFYKRKKVQTDLRDTQVHLARF 1053          
BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Match: D5AEH5_PICSI (DNA-directed DNA polymerase n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5AEH5_PICSI)

HSP 1 Score: 259 bits (663), Expect = 8.810e-85
Identity = 132/225 (58.67%), Postives = 163/225 (72.44%), Query Frame = 0
Query:    1 MDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPN-----------AAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSA-LLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKTLCAHCRPAEGDIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKKVQIDLKEAQDQLD 213
            MD+SLLVITK L K+ D   Y  K AHVELA RM+KRD  TAP            AAKGA AYE+SEDP+YVLENN+PID +YYL NQLSKPL R+FEPI+ N S  LLHG HTR++   TP+    GIM FA K+L C+GCK PIS++++TLC+HC+  E ++Y   +  V E ++LF +LWTQCQ CQ S HQDVLC++RDCPIFY+RKK Q DL EA+ QL+
Sbjct:    4 MDLSLLVITKGLTKTGDD--YAVKAAHVELAERMRKRDAATAPTVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQLSKPLLRIFEPILKNASKELLHGSHTRAVSISTPSN--SGIMKFAKKQLSCIGCKTPISKEDQTLCSHCKGREAELYQKTVANVRELEMLFGKLWTQCQRCQASLHQDVLCTSRDCPIFYRRKKAQKDLTEAEVQLE 224          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1101.1354.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6D3_ECTSI2.260e-14499.54DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A7S3XMQ3_HETAK4.340e-11573.68DNA-directed DNA polymerase n=1 Tax=Heterosigma ak... [more]
K8Z648_NANGC1.810e-11073.36DNA polymerase n=1 Tax=Nannochloropsis gaditana (s... [more]
A0A4D9CSP3_9STRA1.580e-10573.80DNA polymerase n=3 Tax=Monodopsidaceae TaxID=42507... [more]
A0A835YQA9_9STRA6.100e-10269.00DNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A7S2MCL7_9STRA1.570e-10065.37DNA-directed DNA polymerase n=1 Tax=Dictyocha spec... [more]
A0A7S2UT84_9STRA2.960e-9368.60DNA-directed DNA polymerase (Fragment) n=1 Tax=Fib... [more]
A0A812URB4_SYMMI2.780e-9165.32DNA polymerase n=1 Tax=Symbiodinium microadriaticu... [more]
F0Y3Y2_AURAN3.880e-8762.83DNA polymerase n=1 Tax=Aureococcus anophagefferens... [more]
D5AEH5_PICSI8.810e-8558.67DNA-directed DNA polymerase n=1 Tax=Picea sitchens... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006134DNA-directed DNA polymerase, family B, multifunctional domainPFAMPF00136DNA_pol_Bcoord: 2..89
e-value: 2.2E-9
score: 36.6
IPR042087DNA polymerase family B, C-terminal domainGENE3D1.10.132.60coord: 1..97
e-value: 1.4E-18
score: 69.2
IPR025687C4-type zinc-finger of DNA polymerase deltaPFAMPF14260zf-C4polcoord: 127..198
e-value: 2.8E-17
score: 62.9
NoneNo IPR availablePANTHERPTHR10322:SF23DNA POLYMERASE DELTA CATALYTIC SUBUNITcoord: 1..213
NoneNo IPR availablePANTHERPTHR10322DNA POLYMERASE CATALYTIC SUBUNITcoord: 1..213
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 6..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1101contigS-firma_F_contig1101:7113..10131 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1101.1354.1mRNA_S-firma_F_contig1101.1354.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1101 7113..10158 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1101.1354.1 ID=prot_S-firma_F_contig1101.1354.1|Name=mRNA_S-firma_F_contig1101.1354.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=218bp
MDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPNAAKGAA
AYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGE
HTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKTLCAHCRPAEG
DIYSAKLREVNEQQLLFSRLWTQCQDCQGSFHQDVLCSNRDCPIFYKRKK
VQIDLKEAQDQLDLFAW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025687Znf-C4pol
IPR042087DNA_pol_B_C
IPR006134DNA-dir_DNA_pol_B_multi_dom