mRNA_S-firma_F_contig11.1317.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11.1317.1
Unique NamemRNA_S-firma_F_contig11.1317.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11.1317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11contigS-firma_F_contig11:6069..6907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size839
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11.1317.1prot_S-firma_F_contig11.1317.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11 6365..6844 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.603787-UTR-S-firma_F_contig11:6068..63641622815644.603787-UTR-S-firma_F_contig11:6068..6364Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11 6069..6364 +
1696949474.9345999-UTR-S-firma_F_contig11:6068..63641696949474.9345999-UTR-S-firma_F_contig11:6068..6364Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11 6069..6364 +
1622815644.622804-UTR-S-firma_F_contig11:6844..69071622815644.622804-UTR-S-firma_F_contig11:6844..6907Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11 6845..6907 +
1696949474.956286-UTR-S-firma_F_contig11:6844..69071696949474.956286-UTR-S-firma_F_contig11:6844..6907Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11 6845..6907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.6137278-CDS-S-firma_F_contig11:6364..68441622815644.6137278-CDS-S-firma_F_contig11:6364..6844Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11 6365..6844 +
1696949474.9433408-CDS-S-firma_F_contig11:6364..68441696949474.9433408-CDS-S-firma_F_contig11:6364..6844Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11 6365..6844 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11.1317.1

>prot_S-firma_F_contig11.1317.1 ID=prot_S-firma_F_contig11.1317.1|Name=mRNA_S-firma_F_contig11.1317.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=160bp
MGKTVEAEELFKQALCIKTNKMGPDDLENAVTLYELGRCARAERRLVKAE
KCLRQALKIVEANLGPNDLQVAWTLQELGRCVRQAGRLGEAEELLKRALR
IQEAKLGPNHASIPWTLYDLARCVGKSEPEKQIGDIVNRVDDLLKFLQRR
MKEYRRSTI*
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mRNA from alignment at S-firma_F_contig11:6069..6907+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11.1317.1 ID=mRNA_S-firma_F_contig11.1317.1|Name=mRNA_S-firma_F_contig11.1317.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=839bp|location=Sequence derived from alignment at S-firma_F_contig11:6069..6907+ (Sphaerotrichia firma ET2_F female)
CCCTGACGCAGCACGAGCTGGGCCTGTGTGTGCGACAACAGCCGGGGCGG
CTGCGAGAAGCCGAAGAGTTCCTCCGGCAAGCGCTCCCAACCAAGAAGAC
CAAGCTTGGGTCTGGCCATTCCCAGGTGGCCGTTACGCTGCACGAGCTGG
GTCGGTGTGCCCGAGAGGCTGGTCGGCTGGGGGAGGCCAGAGAACACCTC
CAGCAAGCGCTCGCGATACAACAAGAGGGTCAGCTTGGGACCGACGACCT
CGGAATCGCCTGGACGCTGCACGAACTGGCGCTGTGCGCGAGAGAGATGG
GGAAGACCGTAGAGGCCGAAGAATTGTTCAAGCAGGCGCTCTGCATCAAA
ACCAACAAGATGGGGCCTGACGACCTCGAGAATGCCGTGACGCTGTACGA
GCTGGGCCGATGCGCGCGAGCGGAGCGGCGGTTGGTGAAGGCCGAAAAGT
GCCTAAGGCAAGCTCTCAAGATCGTCGAGGCAAACCTCGGGCCCAACGAC
CTTCAGGTCGCCTGGACACTGCAAGAGCTGGGGCGGTGTGTGCGACAAGC
CGGCCGGCTCGGAGAGGCGGAAGAACTTCTCAAGCGAGCTTTGCGGATCC
AGGAGGCGAAGCTGGGACCCAACCATGCCAGCATCCCCTGGACACTGTAT
GATCTGGCTCGATGCGTCGGAAAATCCGAGCCGGAAAAACAGATTGGAGA
TATTGTCAACCGCGTCGACGATCTCCTCAAGTTCCTGCAGCGCCGGATGA
AAGAATACCGCCGTAGTACCATTTAGGTGTGGCTGGCGGAGTTTCTCACA
ATGATAGCGTGGCTGCACTACGAGTTCCTTTGGTTGTTT
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Coding sequence (CDS) from alignment at S-firma_F_contig11:6069..6907+

>mRNA_S-firma_F_contig11.1317.1 ID=mRNA_S-firma_F_contig11.1317.1|Name=mRNA_S-firma_F_contig11.1317.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=960bp|location=Sequence derived from alignment at S-firma_F_contig11:6069..6907+ (Sphaerotrichia firma ET2_F female)
ATGGGGAAGACCGTAGAGGCCGAAGAATTGTTCAAGCAGGCGCTCTGCAT
CAAAACCAACAAGATGGGGCCTGACGACCTCGAGAATGCCGTGACGCTGT
ACGAGCTGGGCCGATGCGCGCGAGCGGAGCGGCGGTTGGTGAAGGCCGAA
AAGTGCCTAAGGCAAGCTCTCAAGATCGTCGAGGCAAACCTCGGGCCCAA
CGACCTTCAGGTCGCCTGGACACTGCAAGAGCTGGGGCGGTGTGTGCGAC
AAGCCGGCCGGCTCGGAGAGGCGGAAGAACTTCTCAAGCGAGCTTTGCGG
ATCCAGGAGGCGAAGCTGGGACCCAACCATGCCAGCATCCCCTGGACACT
GTATGATCTGGCTCGATGCGTCGGAAAATCCGAGCCGGAAAAACAGATTG
GAGATATTGTCAACCGCGTCGACGATCTCCTCAAGTTCCTGCAGCGCCGG
ATGAAAGAATACCGCCGTAGTACCATTTAGATGGGGAAGACCGTAGAGGC
CGAAGAATTGTTCAAGCAGGCGCTCTGCATCAAAACCAACAAGATGGGGC
CTGACGACCTCGAGAATGCCGTGACGCTGTACGAGCTGGGCCGATGCGCG
CGAGCGGAGCGGCGGTTGGTGAAGGCCGAAAAGTGCCTAAGGCAAGCTCT
CAAGATCGTCGAGGCAAACCTCGGGCCCAACGACCTTCAGGTCGCCTGGA
CACTGCAAGAGCTGGGGCGGTGTGTGCGACAAGCCGGCCGGCTCGGAGAG
GCGGAAGAACTTCTCAAGCGAGCTTTGCGGATCCAGGAGGCGAAGCTGGG
ACCCAACCATGCCAGCATCCCCTGGACACTGTATGATCTGGCTCGATGCG
TCGGAAAATCCGAGCCGGAAAAACAGATTGGAGATATTGTCAACCGCGTC
GACGATCTCCTCAAGTTCCTGCAGCGCCGGATGAAAGAATACCGCCGTAG
TACCATTTAG
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