mRNA_S-firma_F_contig10055.119.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10055.119.1
Unique NamemRNA_S-firma_F_contig10055.119.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10055.119.1 vs. uniprot
Match: D7FVV8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVV8_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 2.020e-76
Identity = 187/323 (57.89%), Postives = 223/323 (69.04%), Query Frame = 2 
Query:  248 LRRRIRSMADEAVAKKLAGSASPTGSGTSAGSRNKSXXXXXXXXXXXXXXDNNPTTPSYLRAFQAGVANNVRAMCELPDPREDREEEELEAEILQFGDDVQAARKRISATRARIARLSADTDRDALRASAAAEERACSVLEARTGHARKEKDVGGPLPLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAFSGIDPNVMEPKLSALIGKLTELPGPLKAVRQEIPELTASLAVSVQNAESVLEKMESRTEALLGKAPPTPLPSKKRRAAGAIGS---ADDPGGER--PEEVRSAAREARVEQARKEWEAGGLGVAGSFFN 1201
            +R R+ ++ DE   K LAG  S    G+SAG                     +  T +YLRAFQA VA+ VR +CE+ D RE REE+EL  EI QF  D++AAR R+ ATRAR+ARLSADT RDALR S AA++RAC+VLEA T HAR+E + GGPLPL          XXXXXXXXXXXXXXXXXXXXX G F G++  V+EPK+SALIGK+ ELPGPLK+V QEIPELTASLAVSVQ AE+ ++  +SRTEALLGKAPPTPL SKK + A        A+    ER  PE+ R+AAREARV+QARKEWEA G+GV G  FN
Sbjct:    1 MRYRVSTVVDETTKKSLAGKKS----GSSAG-------------VAVVAPAQDAATTAYLRAFQAAVADKVRDLCEVQDARESREEDELVGEIFQFSHDLRAARSRLYATRARVARLSADTCRDALRVSEAADDRACAVLEASTAHARRESETGGPLPLR----IDDAAXXXXXXXXXXXXXXXXXXXXXXGIFQGLETGVVEPKVSALIGKMAELPGPLKSVLQEIPELTASLAVSVQEAEAAIKAGQSRTEALLGKAPPTPLSSKKGKGAXXXXXXXXANVVEDERYPPEDARAAAREARVQQARKEWEAIGVGVVGGIFN 302
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10055.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVV8_ECTSI2.020e-7657.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10055contigS-firma_F_contig10055:3845..5341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002320.1
Exons1
Model size1497
Cds size1089
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10055.119.1prot_S-firma_F_contig10055.119.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10055 3960..5048 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.8216517-UTR-S-firma_F_contig10055:3844..39591622815529.8216517-UTR-S-firma_F_contig10055:3844..3959Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10055 3845..3959 +
1696949392.230797-UTR-S-firma_F_contig10055:3844..39591696949392.230797-UTR-S-firma_F_contig10055:3844..3959Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10055 3845..3959 +
1622815529.849158-UTR-S-firma_F_contig10055:5048..53411622815529.849158-UTR-S-firma_F_contig10055:5048..5341Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10055 5049..5341 +
1696949392.2498465-UTR-S-firma_F_contig10055:5048..53411696949392.2498465-UTR-S-firma_F_contig10055:5048..5341Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10055 5049..5341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.8350148-CDS-S-firma_F_contig10055:3959..50481622815529.8350148-CDS-S-firma_F_contig10055:3959..5048Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10055 3960..5048 +
1696949392.240367-CDS-S-firma_F_contig10055:3959..50481696949392.240367-CDS-S-firma_F_contig10055:3959..5048Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10055 3960..5048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10055.119.1

>prot_S-firma_F_contig10055.119.1 ID=prot_S-firma_F_contig10055.119.1|Name=mRNA_S-firma_F_contig10055.119.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=363bp
MSSSRKRKAADAAPAVAQASSNSAAGSTRNEQPLVRATNALLEELRRRIR
SMADEAVAKKLAGSASPTGSGTSAGSRNKSGGGTAAAAAEPPAADNNPTT
PSYLRAFQAGVANNVRAMCELPDPREDREEEELEAEILQFGDDVQAARKR
ISATRARIARLSADTDRDALRASAAAEERACSVLEARTGHARKEKDVGGP
LPLASAANGGGGDDDDGDGDGDGDGDGDGDGDGDAGAFSGIDPNVMEPKL
SALIGKLTELPGPLKAVRQEIPELTASLAVSVQNAESVLEKMESRTEALL
GKAPPTPLPSKKRRAAGAIGSADDPGGERPEEVRSAAREARVEQARKEWE
AGGLGVAGSFFN*
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mRNA from alignment at S-firma_F_contig10055:3845..5341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10055.119.1 ID=mRNA_S-firma_F_contig10055.119.1|Name=mRNA_S-firma_F_contig10055.119.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1497bp|location=Sequence derived from alignment at S-firma_F_contig10055:3845..5341+ (Sphaerotrichia firma ET2_F female)
CTCGTTTTGTACCCACGGTGCCCCGAGGGAGTGCTGGTCGCATGCGCGGT
CTTGCCACGCACGGCGCAGAGGAGAGAGAGACTGCAGAAGAACCACACGC
AGAGAGGGACGTGTTATGTCGTCCTCAAGAAAACGGAAAGCTGCCGATGC
TGCTCCTGCTGTAGCACAAGCTTCGAGCAACAGCGCTGCTGGTAGTACCC
GGAATGAGCAGCCGTTGGTCCGAGCTACCAACGCTCTCCTCGAGGAGCTG
CGGCGCAGGATCAGGTCGATGGCCGACGAGGCCGTGGCGAAGAAGCTGGC
CGGGTCAGCCAGCCCTACCGGGTCAGGAACATCAGCAGGGAGCAGGAATA
AAAGCGGCGGGGGCACAGCAGCCGCAGCTGCAGAACCCCCCGCAGCAGAC
AACAACCCGACAACACCGTCGTACCTGCGGGCGTTCCAAGCCGGGGTTGC
CAACAACGTACGGGCCATGTGCGAGCTGCCGGACCCGCGAGAGGACCGGG
AAGAGGAAGAGCTCGAGGCTGAAATCCTCCAGTTCGGCGACGACGTTCAG
GCCGCGAGGAAGAGGATTTCGGCCACCCGCGCGCGCATCGCCCGGCTCTC
GGCCGACACCGACAGAGACGCCCTGCGAGCGTCGGCGGCCGCGGAAGAGC
GTGCGTGCTCCGTCCTCGAGGCCAGGACAGGGCACGCGCGGAAGGAGAAG
GATGTGGGGGGTCCCCTGCCGCTAGCGTCGGCGGCTAACGGCGGCGGCGG
CGATGACGACGACGGCGACGGCGACGGCGACGGCGACGGCGACGGCGACG
GCGACGGCGACGGCGACGCGGGGGCCTTTTCGGGCATCGACCCCAACGTC
ATGGAGCCCAAGCTATCCGCCCTCATCGGGAAGCTGACGGAGCTTCCCGG
CCCGCTCAAGGCGGTGCGGCAGGAGATACCCGAGCTCACCGCCTCGCTCG
CGGTCTCGGTGCAGAACGCGGAGTCGGTGCTGGAGAAGATGGAGAGCCGG
ACGGAAGCCCTGTTGGGCAAGGCGCCGCCGACGCCGCTGCCCAGTAAGAA
GCGCAGAGCAGCGGGGGCGATCGGCTCGGCGGACGACCCGGGCGGCGAGC
GACCAGAGGAGGTGCGGTCGGCGGCGCGGGAAGCGAGGGTGGAGCAGGCG
AGGAAGGAGTGGGAGGCGGGCGGGCTTGGCGTGGCCGGCAGCTTCTTCAA
CTGATCGGAGAGGGTCTCGTATTTTGTATCTTATGCTTCTCCTCTTCCTC
GTACTCCGCGGGATTGGGGGAGAGCAAGACGGGGGTTGTTTTTGCTCGCT
ATTTATCTCGGTGGGTCGGTCGGGCGTGTACGCCCTCGCACAGAACAGAA
GCCGGCCATTTCTTGTGTATTGTCTTAACTTGCGAGGGTTAATTCGTCTA
CGCGTATGTACGTACTTGGTTCGCGTCTTGAGTTGCTGGATTTGCCGTGC
GCCTGCCCGCCGAAGGGTATGTAGGGGGTCCCGTTTTGGTACCCGCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10055:3845..5341+

>mRNA_S-firma_F_contig10055.119.1 ID=mRNA_S-firma_F_contig10055.119.1|Name=mRNA_S-firma_F_contig10055.119.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2178bp|location=Sequence derived from alignment at S-firma_F_contig10055:3845..5341+ (Sphaerotrichia firma ET2_F female)
ATGTCGTCCTCAAGAAAACGGAAAGCTGCCGATGCTGCTCCTGCTGTAGC
ACAAGCTTCGAGCAACAGCGCTGCTGGTAGTACCCGGAATGAGCAGCCGT
TGGTCCGAGCTACCAACGCTCTCCTCGAGGAGCTGCGGCGCAGGATCAGG
TCGATGGCCGACGAGGCCGTGGCGAAGAAGCTGGCCGGGTCAGCCAGCCC
TACCGGGTCAGGAACATCAGCAGGGAGCAGGAATAAAAGCGGCGGGGGCA
CAGCAGCCGCAGCTGCAGAACCCCCCGCAGCAGACAACAACCCGACAACA
CCGTCGTACCTGCGGGCGTTCCAAGCCGGGGTTGCCAACAACGTACGGGC
CATGTGCGAGCTGCCGGACCCGCGAGAGGACCGGGAAGAGGAAGAGCTCG
AGGCTGAAATCCTCCAGTTCGGCGACGACGTTCAGGCCGCGAGGAAGAGG
ATTTCGGCCACCCGCGCGCGCATCGCCCGGCTCTCGGCCGACACCGACAG
AGACGCCCTGCGAGCGTCGGCGGCCGCGGAAGAGCGTGCGTGCTCCGTCC
TCGAGGCCAGGACAGGGCACGCGCGGAAGGAGAAGGATGTGGGGGGTCCC
CTGCCGCTAGCGTCGGCGGCTAACGGCGGCGGCGGCGATGACGACGACGG
CGACGGCGACGGCGACGGCGACGGCGACGGCGACGGCGACGGCGACGGCG
ACGCGGGGGCCTTTTCGGGCATCGACCCCAACGTCATGGAGCCCAAGCTA
TCCGCCCTCATCGGGAAGCTGACGGAGCTTCCCGGCCCGCTCAAGGCGGT
GCGGCAGGAGATACCCGAGCTCACCGCCTCGCTCGCGGTCTCGGTGCAGA
ACGCGGAGTCGGTGCTGGAGAAGATGGAGAGCCGGACGGAAGCCCTGTTG
GGCAAGGCGCCGCCGACGCCGCTGCCCAGTAAGAAGCGCAGAGCAGCGGG
GGCGATCGGCTCGGCGGACGACCCGGGCGGCGAGCGACCAGAGGAGGTGC
GGTCGGCGGCGCGGGAAGCGAGGGTGGAGCAGGCGAGGAAGGAGTGGGAG
GCGGGCGGGCTTGGCGTGGCCGGCAGCTTCTTCAACTGAATGTCGTCCTC
AAGAAAACGGAAAGCTGCCGATGCTGCTCCTGCTGTAGCACAAGCTTCGA
GCAACAGCGCTGCTGGTAGTACCCGGAATGAGCAGCCGTTGGTCCGAGCT
ACCAACGCTCTCCTCGAGGAGCTGCGGCGCAGGATCAGGTCGATGGCCGA
CGAGGCCGTGGCGAAGAAGCTGGCCGGGTCAGCCAGCCCTACCGGGTCAG
GAACATCAGCAGGGAGCAGGAATAAAAGCGGCGGGGGCACAGCAGCCGCA
GCTGCAGAACCCCCCGCAGCAGACAACAACCCGACAACACCGTCGTACCT
GCGGGCGTTCCAAGCCGGGGTTGCCAACAACGTACGGGCCATGTGCGAGC
TGCCGGACCCGCGAGAGGACCGGGAAGAGGAAGAGCTCGAGGCTGAAATC
CTCCAGTTCGGCGACGACGTTCAGGCCGCGAGGAAGAGGATTTCGGCCAC
CCGCGCGCGCATCGCCCGGCTCTCGGCCGACACCGACAGAGACGCCCTGC
GAGCGTCGGCGGCCGCGGAAGAGCGTGCGTGCTCCGTCCTCGAGGCCAGG
ACAGGGCACGCGCGGAAGGAGAAGGATGTGGGGGGTCCCCTGCCGCTAGC
GTCGGCGGCTAACGGCGGCGGCGGCGATGACGACGACGGCGACGGCGACG
GCGACGGCGACGGCGACGGCGACGGCGACGGCGACGGCGACGCGGGGGCC
TTTTCGGGCATCGACCCCAACGTCATGGAGCCCAAGCTATCCGCCCTCAT
CGGGAAGCTGACGGAGCTTCCCGGCCCGCTCAAGGCGGTGCGGCAGGAGA
TACCCGAGCTCACCGCCTCGCTCGCGGTCTCGGTGCAGAACGCGGAGTCG
GTGCTGGAGAAGATGGAGAGCCGGACGGAAGCCCTGTTGGGCAAGGCGCC
GCCGACGCCGCTGCCCAGTAAGAAGCGCAGAGCAGCGGGGGCGATCGGCT
CGGCGGACGACCCGGGCGGCGAGCGACCAGAGGAGGTGCGGTCGGCGGCG
CGGGAAGCGAGGGTGGAGCAGGCGAGGAAGGAGTGGGAGGCGGGCGGGCT
TGGCGTGGCCGGCAGCTTCTTCAACTGA
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