mRNA_S-firma_F_contig10704.957.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10704.957.1 vs. uniprot
Match: D7FUX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX0_ECTSI) HSP 1 Score: 587 bits (1512), Expect = 5.360e-190 Identity = 456/923 (49.40%), Postives = 551/923 (59.70%), Query Frame = 1
Query: 49 TAAWLVHCSLSRRRSFLRRVLEFSAATELALEEEQSAEAARQXXXXXXXXXXXXXXSISSSCGSLSDRAKEAERQLATLQELIADGLELGGRFPSEAGRR--GRKERRHLQACVQRLSRRVAKVEQAAEELRVMAEVEQLDRLLSRLESGGGGVLDGDGLSSGEDGDGALENQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTRARL--------LLKRRSNGGGDSSVSGDKSATRYVPGCVFREELKGWFDKLSKREQDAVDRLKLGLEHWDLKMMDKCIAQLRLLELPELVKEFQKKREDVRSKRWRLREELKVRENWNSKESNTSRLWKACVEAETFFAAKKMKEYQSAKLCLENACAAELEIKARRILAAKGIVADPRCNVRQDLACGPRLLLREDPVDAGVVGGGGGGTRLFVGADASNSLTASPGVSRRLALLSEGENGEPCHPRDAASSGVTGGDLMG-GAHNCGSPLADDGDAEGGRDTSEHTAATASAAGVTVSGNSDSAPWGQPPGRGDTRGGEMMQLCQLRVWELMEARQRSAKEAFQECVTKQEDERRRAKDRHQAALKARDADETHRQECIARLDTRGVIEDKRLKMEMDRLMKEELRREEEXAKRKRRADADRLKQLWSSDGDFFSLLSAADVALAAATAAFRKGFSLAPGAVLNATWGLVVAECAEEGVGGAGTAAGASGAAPHLCTS---SAAVDVSDLEHGLAGS---DGVCG-GAGGTWSEAAAARSSGEGSESALWWAVSAAGSTAGAVLRAAYASAGWLLGQTLGLDTPHVQCEIRVVLSLYAWLVSLVLVMKLVRGLL-GPGNGGGAA--VQWILLAAWVWGRFHDWVLHASQELVLLFAPAPALVLAYGRALRCFEKHRRPDGFWWANGLDVRFFWSRALPAIVSGVLACILGSQVS 2754
TAAWL +L+RRRSF R+ A +LALEEE+S +ARQ S+ SS GSL +RA EAERQ A LQEL+ +GLELG R+P EA RR G +E R L++C + LS+R+AKVE+AA+EL VMAEVEQL L+RL G XXXXXXXXXXXXXXXXXXXXXXXX RARL A R CVFREEL W D+L++REQ+AVD LKLGLE WDL+M D+ +AQLRLLELPE+V+EF+KKREDVR KRWRL++ELK E +KE N SRL ACV+AETF + + + EY+ AK LENA AA LE+KARRIL+ GI ADPRCNVR D A GP LLLR+ P +V GG G LF GAD TASP V RRL L S HP A +G M NCG +G G S A A V V GNSD A W + + GG QL + R EL+ A +RSA+ F CVTK E+E RRA +R ++LKARDA+E++RQ IARLD R V ED RL ME RL X + L + DGDF+ LSA +V LAAA AA++KG SLAPGA+L+A W L+VAECA+ G +GA P C + +AA + LE G AG+ +G CG G +GSESALWWA+S AGSTAGAV+RA Y+S GWLLGQTLG TP V+CE+R V SL AWL+SL L K+V GLL GPG GG A ++W+LLA WVW RF WV+ A++ ++LL APAPALVLAYG + E+HR+PDG WW G DVR W R LPA+V+ LA LG + S
Sbjct: 78 TAAWLGRRTLARRRSFSLRLRRLCDAADLALEEERSLASARQGSSSSSTSRLR---SLGSSSGSLRERAAEAERQRAALQELVEEGLELGRRYPWEAARRRRGGEESRRLESCARELSQRLAKVERAAQELGVMAEVEQL---LARLA----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRPQCTPRRARLSXXXXXXXXXXXXXXXXXXXXXXXXXXARRTDSRCVFREELARWCDRLAEREQEAVDWLKLGLETWDLEMADRALAQLRLLELPEIVQEFEKKREDVRGKRWRLQQELKTAEEL-AKEGNPSRLRNACVKAETF-SCEDLDEYRPAKRSLENAHAARLEVKARRILSIYGIPADPRCNVRLDSAGGPALLLRDVPR---LVDDGGAG--LFTGAD-----TASPSVGRRLVLDSVKREAGEKHPSGAPDNGDASDRRMDVSEENCG--RGGNGVVRGEFSCSPRRQPPADAPAVGVDGNSDVATWAR-----SSAGGGETQLSR-RQQELVVAARRSAETDFMACVTKLEEEHRRACEREASSLKARDAEESYRQAYIARLDERSVREDARLVMEKKRLQXXXXXXXXXXXXXXXXXXXXXREGLQARDGDFWLALSAFEVCLAAAAAAYKKGISLAPGAILDAAWRLLVAECADGGXXXVVV----TGAMPPFCQNPFGAAAPAATSLEGGTAGALDNNGECGAGXXXXXXXXXXXXXPSDGSESALWWALSYAGSTAGAVVRAGYSSGGWLLGQTLGRVTPGVRCEVRAVFSLVAWLLSLALAQKIVGGLLLGPGGGGPATGVLRWLLLAVWVWARFQGWVVSAARGMLLLLAPAPALVLAYGLVMGYVERHRKPDGCWWVRGWDVRPVWFRVLPAVVASGLAWFLGGRAS 960
BLAST of mRNA_S-firma_F_contig10704.957.1 vs. uniprot
Match: A0A6H5L440_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L440_9PHAE) HSP 1 Score: 523 bits (1346), Expect = 8.350e-166 Identity = 414/943 (43.90%), Postives = 515/943 (54.61%), Query Frame = 1
Query: 16 STALAGS--ALLATAAWLVHCSLSRRRSFLRRVLEFSAATELALEEEQSAEAARQXXXXXXXXXXXXXXSISSSCGSLSDRAKEAERQLATLQELIADGLELGGRFPSEAGRRGRKERRHLQACVQRLSRRVAKVEQAAEELRVMAEVEQLDRLLSRLESGGGGVLDGDGLSSGEDGDGALENQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTRARLLLKRRSNGGGDSSVSGDKSATRYVPG-CVFREELKGWFDKLSKREQDAVDRLKLGLEHWDLKMMDKCIAQLRLLELPELVKEFQKKREDVRSKRWRLREELKVRENWNSKESNTSRLWKACVEAETFFAAKKMKEYQSAKLCLENACAAELEIKARRILAAKGIVADPRCNVRQDLACGPRLLLREDPVDAGVVGGGGGGTRLFVGADASNSLTASPGVSRRLALLSEGENGEPCHPRDAASS---------------GVTGGDLMGGAHNCGSPLADDGDAEGGRDTSEHTAATASAAGVTVSGNSDSAPWGQPPGRGDTRGGEMMQLCQLRVWELMEARQRSAKEAFQECVTKQEDERRRAKDRHQAALKARDADETHRQECIARLDTRGVIEDKRLKMEMDRLMKEELRREEEXAKRKRRADADRLKQLWSSDGDFFSLLSAADVALAAATAAFRKGFSLAPGAVLNATWGLVVAECAE-EGVGGAGTAAGASGAAPHLCTS---SAAVDVSDLEHGLAG-----SDGVCGGAGGTWSEAAAARSSGEGSESALWWAVSAAGSTAGAVLRAAYASAGWLLGQTLGLDTPHVQCEIRVVLSLYAWLVSLVLVMKLVRGLL-GPGNGGGAA--VQWILLAAWVWGRFHDWVLHASQELVLLFAPAPALVLAYGRALRCFEKHRRPDGFWWANGLDVRFFWSRALPAIVSGVLACILGSQVS 2754
S LAG A +ATAA L +L+RRRSF R+ A +L LEEE+S +ARQ +SS S S TL + + G E R L++ LS+R+AKVE+AA+EL VMAEVE L L+ G XXXXXXXX LSTRA LLL R +G D+ G + R CVFREEL W D+L++REQ+AVD LKLGLE WDL+M D+ +AQLRLLELPE+V+EF+KKREDVR KRWRL++ELK E ++KE N SRL ACV+AETF + + + EY+ AK LENA AA LE++ARRIL+ GI ADPRCNVR D A GP LLLR+ P A GG LF+GADA ASP V RRL L S + HPR A G G ++GG +C P DA V V+G+ D A W + + GG QL + R EL+ A +RSA+ F VTK E+E RRA +R ++LKARDA+E++RQ IARLD R V ED RL ME RL X ++L + DG F+ LSA +V LAAA AA++KG +LAPGA+L+A WGL+VAECA+ +GA P C + +AA + LE G AG RS +GSESALWWA+S AGSTAGAV+RA Y+S GWLLGQTLGL TP V+CE+R VLSL AWL+SL L K+V GLL GPG GG A ++W+LLA WVW RF WV+ A++ ++LL AP PALVLAYG + E+HR+PDG WW G DVR W R LP +V+ LA LG + S
Sbjct: 58 SAGLAGGVFAAVATAACLGRRTLARRRSFSLRLRRLCDAADLVLEEERSLASARQG---------------NSSSSSTS----------VTLGKPLGGAXXXXGXXXXXXXXXXXGESRRLESYALELSQRLAKVERAAKELGVMAEVEHLLASLA-------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGAAWQRRRNWPQCTPQRARLSTRAALLLSWRPSGSNDNGGEGGGTTARRADSRCVFREELARWCDRLAEREQEAVDWLKLGLETWDLEMADRALAQLRLLELPEIVQEFEKKREDVRGKRWRLQQELKAAEE-SAKEGNPSRLRNACVKAETF-SCEDLDEYRPAKRSLENAHAARLEVQARRILSIYGIPADPRCNVRLDSAGGPALLLRDVPRLAD-----DGGAGLFIGADA-----ASPSVGRRLVLDSVKQEAGEKHPRGAPDDDDASDRRMDVSEETCGREGNGVVGGEFSCSPPWQPPADAPA----------------VGVNGSGDVATWAR-----SSAGGGETQLSR-RQQELVLAARRSAETDFMAYVTKLEEEHRRACEREASSLKARDAEESYRQAYIARLDERSVREDARLVMEKKRLQDXXXXXXXXXXXXXXXXXXXXXQELQARDGGFWLALSAFEVCLAAAGAAYKKGINLAPGAILDAAWGLLVAECADGXXXXXXXXXVAVTGAVPPFCENPFGAAAPAATPLEGGAAGVLDXXXXXXXXXXXXXXXXXXXXRS--DGSESALWWALSYAGSTAGAVVRAGYSSGGWLLGQTLGLVTPDVRCEVRAVLSLVAWLLSLALAQKIVGGLLLGPGGGGPATGVLRWLLLAVWVWARFQGWVVSAARGMLLLLAPVPALVLAYGLVMGYVERHRKPDGCWWVRGWDVRPVWFRVLPTVVASGLAWFLGGRAS 932
BLAST of mRNA_S-firma_F_contig10704.957.1 vs. uniprot
Match: D7FU79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU79_ECTSI) HSP 1 Score: 517 bits (1332), Expect = 1.580e-163 Identity = 409/942 (43.42%), Postives = 524/942 (55.63%), Query Frame = 1
Query: 16 STALAGS--ALLATAAW---LVHCSLSRRRSFLRRVLEFSAATELALEEEQSAEAARQXXXXXXXXXXXXXXSISSSCGSLSDRAKEAERQLATLQELIADGLELGGRFPSEAGRRGRKERRHLQACVQRLSRRVAKVEQAAEELRVMAEVEQLDRLLSRLESGGGGVLDGDGLSSGEDGDGALENQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTRARLLLKRRSNGGGDSSVSGDKSATRYVPGCVFREELKGWFDKLSKREQDAVDRLKLGLEHWDLKMMDKCIAQLRLLELPELVKEFQKKREDVRSKRWRLREELKVRENWNSKESNTSRLWKACVEAETFFAAKKMKEYQSAKLCLENACAAELEIKARRILAAKGIVADPRCNVRQDLACGPRLLLREDPVDAGVVGGGGGGTRLFV-GADASNSLTASPGVSRRLALLSEGENGEPCHPRDAASSGVTGGDLMGGAHNCGSPLA------DDGDAEGGRDTS-----------EHTAATASAAGVTVSGNSDSAPWGQPPGRGDTRGGEMMQLCQLRVWELMEARQRSAKEAFQECVTKQEDERRRAKDRHQAALKARDADETHRQECIARLDTRGVIEDKRLKMEMDRLMKEELRREEEXAKRKRRADADRLKQLWSSDGDFFSLLSAADVALAAATAAFRKGFSLAPGAVLNATWGLVVAECAEEGVGGAGTAAGASGAAPHLCTSSAAVDVSDLEHGLAGS-----DGVCGGA---GGTWSEAAAARSSGEGSESALWWAVSAAGSTAGAVLRAAYASAGWLLGQTLGLDTPHVQCEIRVVLSLYAWLVSLVLVMKLVRGLLGPGNGGGAAVQWILLAAWVWGRFHDWVLHASQELVLLFAPAPALVLAYGRALRCFEKHRRPDGFWWANGLDVRFFWSRALPAIVSGVLACILGSQ 2748
S LAG A++A AAW + HC+ +RRRSF R++ AA +LAL+EE+S +A Q S+ S GSL DRA+EAERQ A L+EL+A G ELG R P EA R R L++ + LS+R+AKVE+AA+EL VMAE+EQL L RL S GGGV LS+G +G AL+++S LS+RA L RRS+G DS SG+ + GCVFREEL W D+L+ RE++A D KLGL+ WDL M D+ I QLRLL+ PE V EFQ+KRE VR RW + EELK + +KE + S L KACV+AETF + + + EYQ+AK L+NA AA+LE +ARRIL+ GI A PRCNVR D A GP LLLR+ + + GG GG+ L GAD TA+P + RR H D+ GD GGA + G +A D D GR T++A V S SD A W +P G G GGE + Q EL+ R RSA+ F+ VTK +++ +RA ++ + LKA A+E++RQ +RLD R +E ++ MEM R+ EE R E KRR D RL++L + DGDF+ LSA +V L AA AA+ KG L P VL+A ++VAECA+ GVG V LE G G+ DG CG GG W +AA +GSE ALWWA+S AGSTAGAV+RA Y+S WLLG+TLGL P V+CE R V +L A L L L ++V GLLG G A +W LL AWVW RF VL A EL++L AP PALV+AYG L E++R+P G WW G DVR W R LP +VS LA LG++
Sbjct: 86 SVCLAGGVFAVVAAAAWVRVIRHCTPARRRSFSRKLSRLCAAADLALKEERSPVSAPQGGSSSGGGSGRLR-SLGSDSGSLRDRAEEAERQQAKLKELLAKGFELGRRVPWEAAWRREDVSRRLESYARELSQRLAKVERAAKELNVMAEIEQL---LDRLASDGGGVRSARDLSAGGNGGEALDDRSEINDGGRGVIPHRAR--------------LSSRAASPLSRRSSGRSDSH-SGENT------GCVFREELTQWCDRLAVREKEAEDWFKLGLKIWDLNMADRGIEQLRLLQRPETVHEFQEKREIVRHNRWEVEEELKKAVKF-AKEGDPSTLRKACVKAETF-SGESLDEYQTAKQLLKNAQAAQLEKEARRILSNHGIFAHPRCNVRFDSASGPALLLRDVSGEEKLGDGGDGGSGLEEPGADCGG--TAAPCMCRR-------------HVLDSVKQEA--GDHRGGAPDFGGVIARKHRRVDRADESCGRQEEGVARVKCSCSLRRQPMTSAAPAVEGSVGSDVATWARPSG-GAVAGGETLLSRQE---ELLVVR-RSAETEFKTHVTKLQEDHKRACEKEASRLKAWYAEESYRQAYFSRLDERSFLEASKIAMEMKRMQDEEAHRRREEVDAKRRRDDRRLEKLQARDGDFWLALSALEVCLVAAVAAYNKG--LTPRVVLDAAREVLVAECADGGVG----------------------VVVTLEGGTTGALEGYDDGACGARDADGGWWRDAA------DGSEGALWWALSYAGSTAGAVVRAGYSSGRWLLGKTLGLVIPDVRCEARTVFALVASLFFLALASRIVGGLLGSGRAHVVARRW-LLVAWVWARFQGSVLRAVWELLMLLAPTPALVMAYGYVLGYVERYRKPGGRWWVRGRDVRPVWFRVLPTVVSSALAWFLGAR 947 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10704.957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10704.957.1 >prot_S-firma_F_contig10704.957.1 ID=prot_S-firma_F_contig10704.957.1|Name=mRNA_S-firma_F_contig10704.957.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=772bp MAEVEQLDRLLSRLESGGGGVLDGDGLSSGEDGDGALENQSDSDSSDSDMback to top mRNA from alignment at S-firma_F_contig10704:1..3695+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10704.957.1 ID=mRNA_S-firma_F_contig10704.957.1|Name=mRNA_S-firma_F_contig10704.957.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3695bp|location=Sequence derived from alignment at S-firma_F_contig10704:1..3695+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10704:1..3695+ >mRNA_S-firma_F_contig10704.957.1 ID=mRNA_S-firma_F_contig10704.957.1|Name=mRNA_S-firma_F_contig10704.957.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=4632bp|location=Sequence derived from alignment at S-firma_F_contig10704:1..3695+ (Sphaerotrichia firma ET2_F female)back to top |