mRNA_S-firma_F_contig10672.911.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10672.911.1
Unique NamemRNA_S-firma_F_contig10672.911.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10672.911.1 vs. uniprot
Match: A0A1V9YHR8_9STRA (TFIIE beta domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YHR8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.670e-15
Identity = 69/241 (28.63%), Postives = 108/241 (44.81%), Query Frame = 1 
Query:   13 PSSVGAVIASVIEALKKQPEYGALSILELAQASGINLNDHLQVLHALKTGQVPKVEPVAGDKYRYKPDSVIRDKDALLETLKHAQFGLPRSRVADAYHGSEADVDQLALDAKLVYIRVPASMRRQIFSDVMFQRREQCLVSLPFGVSTRNGAPFVSNAGSDFRPHFFRGDVLYIGDAVYRVSTAVAKSAK--------SVEPYYGNKAKRVDQMGSFPLP-RSAKYHAEFSERHLPLDRPF 708
            P++V   + +++  L   P +  +SI ++ Q +GI+LN   +V   L+    PKV  V  D + YK    I+DKD L   LK    G+P S + D Y G E D+ +L+    ++ I+       +   +V + R       +   ++T  G  +V+    D      RGD + +GD  +RVS A  K           S+ P   NK+  V  M    L  +  KY   F   HLPLD P+
Sbjct:   34 PTTVVGRLHNILTYLNSIPNHQPVSIQDIYQHTGIDLNID-EVADRLRNN--PKVR-VVNDTFAYKAKYDIKDKDQLQHVLKRVNEGIPGSDLKDCYQGVEDDLRELSRAGHVICIK-----NTETGVEVFYARGFSFYTQVG-ALATVEGGSYVTTVNHDVTAELRRGDAIRVGDHWFRVSNAEKKGPMGNPPQPFTSIHPTVANKS--VSSMADLNLTSKKTKYMLPFDAHHLPLDMPY 262
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10672.911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1V9YHR8_9STRA8.670e-1528.63TFIIE beta domain-containing protein n=1 Tax=Achly... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10672contigS-firma_F_contig10672:2028..2922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog653948.CCA15575
Preferred nameGTF2E2
PFAMsTFIIE_beta
Max annot lvl2759|Eukaryota
KEGG koko:K03137
KEGG Pathwayko03022,ko05169,ko05203,map03022,map05169,map05203
GOsGO:0000428,GO:0000988,GO:0000989,GO:0000990,GO:0000991,GO:0001076,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005673,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009301,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016073,GO:0016591,GO:0016604,GO:0016607,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0090575,GO:0097550,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2001141
Evalue2e-19
EggNOG OGsCOG5174@1|root,KOG3095@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003750.1
Descriptiontranscription initiation from RNA polymerase II promoter
COG categoryK
BRITEko00000,ko00001,ko03021
Hectar predicted targeting categoryother localisation
Exons3
Model size744
Cds size744
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10672.911.1prot_S-firma_F_contig10672.911.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10672 2028..2922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.8284352-CDS-S-firma_F_contig10672:2027..23541622815606.8284352-CDS-S-firma_F_contig10672:2027..2354Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10672 2028..2354 +
1696949449.8252957-CDS-S-firma_F_contig10672:2027..23541696949449.8252957-CDS-S-firma_F_contig10672:2027..2354Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10672 2028..2354 +
1622815606.8534834-CDS-S-firma_F_contig10672:2413..27371622815606.8534834-CDS-S-firma_F_contig10672:2413..2737Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10672 2414..2737 +
1696949449.8427517-CDS-S-firma_F_contig10672:2413..27371696949449.8427517-CDS-S-firma_F_contig10672:2413..2737Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10672 2414..2737 +
1622815606.867448-CDS-S-firma_F_contig10672:2829..29221622815606.867448-CDS-S-firma_F_contig10672:2829..2922Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10672 2830..2922 +
1696949449.8528793-CDS-S-firma_F_contig10672:2829..29221696949449.8528793-CDS-S-firma_F_contig10672:2829..2922Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10672 2830..2922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10672.911.1

>prot_S-firma_F_contig10672.911.1 ID=prot_S-firma_F_contig10672.911.1|Name=mRNA_S-firma_F_contig10672.911.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=248bp
AAAAPSSVGAVIASVIEALKKQPEYGALSILELAQASGINLNDHLQVLHA
LKTGQVPKVEPVAGDKYRYKPDSVIRDKDALLETLKHAQFGLPRSRVADA
YHGSEADVDQLALDAKLVYIRVPASMRRQIFSDVMFQRREQCLVSLPFGV
STRNGAPFVSNAGSDFRPHFFRGDVLYIGDAVYRVSTAVAKSAKSVEPYY
GNKAKRVDQMGSFPLPRSAKYHAEFSERHLPLDRPFAGETAENVPVQR
back to top

mRNA from alignment at S-firma_F_contig10672:2028..2922+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10672.911.1 ID=mRNA_S-firma_F_contig10672.911.1|Name=mRNA_S-firma_F_contig10672.911.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=895bp|location=Sequence derived from alignment at S-firma_F_contig10672:2028..2922+ (Sphaerotrichia firma ET2_F female)
GCCGCCGCCGCGCCGTCCAGTGTGGGCGCCGTGATAGCCTCCGTCATTGA
GGCCCTGAAGAAGCAGCCGGAGTATGGGGCGCTGTCAATCCTGGAGCTGG
CTCAGGCCAGCGGCATCAACCTCAACGACCACCTGCAGGTGCTCCACGCG
CTCAAAACCGGGCAGGTACCCAAGGTGGAACCTGTAGCTGGAGACAAGTA
CCGCTACAAGCCAGACAGCGTCATCCGGGACAAGGATGCGCTGTTGGAAA
CGCTGAAGCACGCCCAGTTTGGGCTGCCGCGGTCCCGGGTGGCGGACGCG
TACCACGGCAGTGAGGCAGACGTTGACGTGTGTGAAGTTGGGGTGTGGAG
GCGGCCACGGCTCTCACCCCCCCCCCCCCCCCCCAGCAACTTGCGCTCGA
CGCCAAGCTGGTGTACATTCGGGTTCCCGCGTCCATGCGGCGACAGATTT
TCTCTGACGTCATGTTTCAGAGGCGGGAGCAGTGCTTGGTGTCCCTGCCG
TTTGGGGTCAGCACGCGCAATGGTGCCCCATTTGTGAGCAATGCTGGGTC
CGACTTTAGGCCGCACTTTTTCCGTGGTGATGTGCTTTACATCGGCGACG
CGGTGTACCGCGTGTCCACCGCCGTGGCCAAGTCGGCCAAGTCCGTCGAG
CCTTACTACGGCAACAAGGCCAAGCGGGTGGACCAAATGGGTTCGTTCCC
CCTACCCCGCGTTCCCTATTGCCCCCCCTTCACTCGCGCACCCACCCCCC
AGGGAGCCAGCTCAGTGCTGCGGGCACCTGCCGCCACCGCATAGCGTCAC
AGTCTGCCAAGTACCATGCGGAGTTTTCAGAGCGGCACCTCCCGCTGGAC
CGGCCGTTTGCGGGCGAGACCGCTGAGAATGTCCCCGTCCAGCGT
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10672:2028..2922+

>mRNA_S-firma_F_contig10672.911.1 ID=mRNA_S-firma_F_contig10672.911.1|Name=mRNA_S-firma_F_contig10672.911.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1488bp|location=Sequence derived from alignment at S-firma_F_contig10672:2028..2922+ (Sphaerotrichia firma ET2_F female)
GCCGCCGCCGCGCCGTCCAGTGTGGGCGCCGTGATAGCCTCCGTCATTGA
GGCCCTGAAGAAGCAGCCGGAGTATGGGGCGCTGTCAATCCTGGAGCTGG
CTCAGGCCAGCGGCATCAACCTCAACGACCACCTGCAGGTGCTCCACGCG
CTCAAAACCGGGCAGGTACCCAAGGTGGAACCTGTAGCTGGAGACAAGTA
CCGCTACAAGCCAGACAGCGTCATCCGGGACAAGGATGCGCTGTTGGAAA
CGCTGAAGCACGCCCAGTTTGGGCTGCCGCGGTCCCGGGTGGCGGACGCG
TACCACGGCAGTGAGGCAGACGTTGACGCCGCCGCCGCGCCGTCCAGTGT
GGGCGCCGTGATAGCCTCCGTCATTGAGGCCCTGAAGAAGCAGCCGGAGT
ATGGGGCGCTGTCAATCCTGGAGCTGGCTCAGGCCAGCGGCATCAACCTC
AACGACCACCTGCAGGTGCTCCACGCGCTCAAAACCGGGCAGGTACCCAA
GGTGGAACCTGTAGCTGGAGACAAGTACCGCTACAAGCCAGACAGCGTCA
TCCGGGACAAGGATGCGCTGTTGGAAACGCTGAAGCACGCCCAGTTTGGG
CTGCCGCGGTCCCGGGTGGCGGACGCGTACCACGGCAGTGAGGCAGACGT
TGACCAACTTGCGCTCGACGCCAAGCTGGTGTACATTCGGGTTCCCGCGT
CCATGCGGCGACAGATTTTCTCTGACGTCATGTTTCAGAGGCGGGAGCAG
TGCTTGGTGTCCCTGCCGTTTGGGGTCAGCACGCGCAATGGTGCCCCATT
TGTGAGCAATGCTGGGTCCGACTTTAGGCCGCACTTTTTCCGTGGTGATG
TGCTTTACATCGGCGACGCGGTGTACCGCGTGTCCACCGCCGTGGCCAAG
TCGGCCAAGTCCGTCGAGCCTTACTACGGCAACAAGGCCAAGCGGGTGGA
CCAAATGGGTTCGTTCCCCCTACCCCGCCAACTTGCGCTCGACGCCAAGC
TGGTGTACATTCGGGTTCCCGCGTCCATGCGGCGACAGATTTTCTCTGAC
GTCATGTTTCAGAGGCGGGAGCAGTGCTTGGTGTCCCTGCCGTTTGGGGT
CAGCACGCGCAATGGTGCCCCATTTGTGAGCAATGCTGGGTCCGACTTTA
GGCCGCACTTTTTCCGTGGTGATGTGCTTTACATCGGCGACGCGGTGTAC
CGCGTGTCCACCGCCGTGGCCAAGTCGGCCAAGTCCGTCGAGCCTTACTA
CGGCAACAAGGCCAAGCGGGTGGACCAAATGGGTTCGTTCCCCCTACCCC
GCTCTGCCAAGTACCATGCGGAGTTTTCAGAGCGGCACCTCCCGCTGGAC
CGGCCGTTTGCGGGCGAGACCGCTGAGAATGTCCCCGTCCAGCGTTCTGC
CAAGTACCATGCGGAGTTTTCAGAGCGGCACCTCCCGCTGGACCGGCCGT
TTGCGGGCGAGACCGCTGAGAATGTCCCCGTCCAGCGT
back to top