prot_S-firma_F_contig10672.911.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10672.911.1
Unique Nameprot_S-firma_F_contig10672.911.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length248
Homology
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BLAST of mRNA_S-firma_F_contig10672.911.1 vs. uniprot
Match: A0A1V9YHR8_9STRA (TFIIE beta domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YHR8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.670e-15
Identity = 69/241 (28.63%), Postives = 108/241 (44.81%), Query Frame = 0 
Query:    5 PSSVGAVIASVIEALKKQPEYGALSILELAQASGINLNDHLQVLHALKTGQVPKVEPVAGDKYRYKPDSVIRDKDALLETLKHAQFGLPRSRVADAYHGSEADVDQLALDAKLVYIRVPASMRRQIFSDVMFQRREQCLVSLPFGVSTRNGAPFVSNAGSDFRPHFFRGDVLYIGDAVYRVSTAVAKSAK--------SVEPYYGNKAKRVDQMGSFPLP-RSAKYHAEFSERHLPLDRPF 236
            P++V   + +++  L   P +  +SI ++ Q +GI+LN   +V   L+    PKV  V  D + YK    I+DKD L   LK    G+P S + D Y G E D+ +L+    ++ I+       +   +V + R       +   ++T  G  +V+    D      RGD + +GD  +RVS A  K           S+ P   NK+  V  M    L  +  KY   F   HLPLD P+
Sbjct:   34 PTTVVGRLHNILTYLNSIPNHQPVSIQDIYQHTGIDLNID-EVADRLRNN--PKVR-VVNDTFAYKAKYDIKDKDQLQHVLKRVNEGIPGSDLKDCYQGVEDDLRELSRAGHVICIK-----NTETGVEVFYARGFSFYTQVG-ALATVEGGSYVTTVNHDVTAELRRGDAIRVGDHWFRVSNAEKKGPMGNPPQPFTSIHPTVANKS--VSSMADLNLTSKKTKYMLPFDAHHLPLDMPY 262
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10672.911.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1V9YHR8_9STRA8.670e-1528.63TFIIE beta domain-containing protein n=1 Tax=Achly... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016656Transcription initiation factor TFIIE, beta subunitPANTHERPTHR12716TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNITcoord: 4..121

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10672contigS-firma_F_contig10672:2028..2922 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10672.911.1mRNA_S-firma_F_contig10672.911.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10672 2028..2922 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10672.911.1 ID=prot_S-firma_F_contig10672.911.1|Name=mRNA_S-firma_F_contig10672.911.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=248bp
AAAAPSSVGAVIASVIEALKKQPEYGALSILELAQASGINLNDHLQVLHA
LKTGQVPKVEPVAGDKYRYKPDSVIRDKDALLETLKHAQFGLPRSRVADA
YHGSEADVDQLALDAKLVYIRVPASMRRQIFSDVMFQRREQCLVSLPFGV
STRNGAPFVSNAGSDFRPHFFRGDVLYIGDAVYRVSTAVAKSAKSVEPYY
GNKAKRVDQMGSFPLPRSAKYHAEFSERHLPLDRPFAGETAENVPVQR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016656TFIIE-bsu