mRNA_S-firma_F_contig1061.836.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1061.836.1
Unique NamemRNA_S-firma_F_contig1061.836.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1061.836.1 vs. uniprot
Match: A0A8J9UWK9_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9UWK9_BRAAE)

HSP 1 Score: 100 bits (250), Expect = 1.380e-21
Identity = 58/161 (36.02%), Postives = 89/161 (55.28%), Query Frame = 1
Query:   19 PLLQAVEAGRVAELKYLLRAGADVNVRSPFNGSTALHLAAIHGRSRIASTLLKLGADTDALDEVGETPLMKAAELGHQPVVETLLKAGSNVHVFSYGRGRAALHFAAGEGHYGVVLALLDHRADKNAQDVSGFTALVLATAQGSLPTVKILLKAGADLTIR 501
            PL+ AV+       +YL+  GADVN+R   +  TALH+A + G   +A+ L+  GAD +A D  G +PLM A    H   VE L+  G++V++      R ALH AA  G+  +   L+ + AD NAQD++G++ L+ A       T + L+  G D+ +R
Sbjct: 3731 PLIFAVDNNHTKITEYLINHGADVNLRGSKDNRTALHVAGLTGNVEMANVLVSNGADINAQDINGYSPLMFAVYKNHTETVEFLINQGADVNLRGSKDNRTALHVAAATGNIEMSNVLVSNGADINAQDINGYSPLMFAVDNNHPETAEFLINQGVDVNLR 3891          
BLAST of mRNA_S-firma_F_contig1061.836.1 vs. uniprot
Match: D7FVI9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI9_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 2.890e-17
Identity = 54/128 (42.19%), Postives = 76/128 (59.38%), Query Frame = 1
Query:  115 STALHLAAIHGRSRIASTLLKLGADTDALDEVGETPLMKAAELGHQPVVETLLKAGSNVHVFSYGRGRAALHFAAGEGHYGVVLALLDHRADKNAQDVSGFTALVLATAQGSLPTVKILLKAGADLTI 498
            +T L  AA  G + +   LL+   D D  D+ G TPLMKAAE GH PV+ETLL  G++        G  ++  AA  G+  +V+ALL+  ADK++   +G T L+ A+ +G LP VK LL A AD+T+
Sbjct:   55 TTTLGFAASEGNNHMVRCLLRW-KDKDEQDQFGYTPLMKAAENGHMPVMETLLDQGADATFRHLDDGSTSIIAAALGGYNEIVIALLNKGADKDSPAANGRTPLMEASRKGHLPVVKTLLNADADVTL 181          
BLAST of mRNA_S-firma_F_contig1061.836.1 vs. uniprot
Match: UPI001B3F70E5 (ankyrin repeat domain-containing protein n=1 Tax=Duganella sp. 1411 TaxID=2806572 RepID=UPI001B3F70E5)

HSP 1 Score: 84.7 bits (208), Expect = 3.330e-17
Identity = 57/166 (34.34%), Postives = 90/166 (54.22%), Query Frame = 1
Query:    7 EPEPPLLQAVEAGRVAELKYLLRAGADVNVRSPFNGSTALHLAAIHGRSRIASTLL-KLGADTDALDEVGETPLMKAAELGHQPVVETLLKAGSNVHVFSYGRGRAALHFAAGEGHYGVVLALLDHRADKNAQDVSGFTALVLATAQGSLPTVKILLKAGADLTIR 501
            + E    +A +   V+ +K +L  G + N R P NG T L +A  +   R+ + L+ + G D +A    G T LM AA   ++PVV  ++K G+ V+     +G  ALH+AA  G   +   LL+H A  +A+  SG T L++A  +G    V++LLK GAD T++
Sbjct:   17 DDEVAFFRAAQLDNVSGVKKVLARGLNPNTRDP-NGETGLIVAMRYEAVRVGTLLMDQPGIDLEAKAPNGNTALMMAAFRQNKPVVLDMIKRGAQVNQ----KGWTALHYAAAAGSVEITSILLEHHAYIDAESPSGMTPLMMAAREGQEQVVELLLKEGADATLK 177          
BLAST of mRNA_S-firma_F_contig1061.836.1 vs. uniprot
Match: A0A1H8JUZ4_9BURK (Uncharacterized protein n=1 Tax=Duganella sp. CF517 TaxID=1881038 RepID=A0A1H8JUZ4_9BURK)

HSP 1 Score: 84.3 bits (207), Expect = 6.110e-17
Identity = 58/166 (34.94%), Postives = 91/166 (54.82%), Query Frame = 1
Query:    7 EPEPPLLQAVEAGRVAELKYLLRAGADVNVRSPFNGSTALHLAAIHGRSRIASTLL-KLGADTDALDEVGETPLMKAAELGHQPVVETLLKAGSNVHVFSYGRGRAALHFAAGEGHYGVVLALLDHRADKNAQDVSGFTALVLATAQGSLPTVKILLKAGADLTIR 501
            + E    +AV+   VA +K +L  G + N R P  G T L LA  H    +A+ L+ + G D +A    G T LM AA   ++P+V  ++K G++V+     +G  ALH+AA  G   +   LL+  A  +A+  SG T L++A  +G+   V++LLK GAD T++
Sbjct:   31 DDEVAFFRAVQVDYVAGVKKVLARGLNPNARDP-GGETGLILAMRHEAVNVATVLMDQPGIDLEAKAPNGNTALMMAAFRQNKPMVLDMIKRGAHVNQ----KGWTALHYAAAAGSVEITNILLEQHAYIDAESPSGMTPLMMAAREGAEQVVELLLKQGADATLK 191          
BLAST of mRNA_S-firma_F_contig1061.836.1 vs. uniprot
Match: UPI0003007EBE (ankyrin repeat domain-containing protein n=1 Tax=Noviherbaspirillum massiliense TaxID=1465823 RepID=UPI0003007EBE)

HSP 1 Score: 82.8 bits (203), Expect = 2.810e-16
Identity = 57/159 (35.85%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   31 AVEAGRVAELKYLLRAGADVNVRSPFNGSTALHLAAIHGRSRIASTLLKL-GADTDALDEVGETPLMKAAELGHQPVVETLLKAGSNVHVFSYGRGRAALHFAAGEGHYGVVLALLDHRADKNAQDVSGFTALVLATAQGSLPTVKILLKAGADLTIRS 504
            AV    V  L+ LL  G D N+  P  G + L +A      ++ + LL     D +A    G+T LM A+ LG++P  E LL  G+ V+      G  ALH+AA  G  G+V  LL + A  NA+  +  T +++A   G + TVK+LL AGAD T+++
Sbjct:   49 AVRFDDVRGLRSLLAQGVDPNLAEPSRGESGLIVALREKSMKVFAVLLDTQDIDVNAQARNGDTALMIASYLGNEPAAEALLARGAQVNR----PGWTALHYAAASGSDGIVQLLLKNSAYINAESPNKTTPIMMAAYMGHIQTVKLLLDAGADATLKN 203          
BLAST of mRNA_S-firma_F_contig1061.836.1 vs. uniprot
Match: A0A2E9FXI6_9RHOB (Uncharacterized protein n=1 Tax=Thalassobius sp. TaxID=1979401 RepID=A0A2E9FXI6_9RHOB)

HSP 1 Score: 80.1 bits (196), Expect = 1.240e-15
Identity = 52/151 (34.44%), Postives = 77/151 (50.99%), Query Frame = 1
Query:   16 PPLLQAVEAGRVAELKYLLRAGADVNVRSPFNGSTALHLAAIHGRSRIASTLLKLGADTDALDEVGETPLMKAAELGHQPVVETLLKAGSNVHVFSYGRGRAALHFAAGEGHYGVVLALLDHRADKNAQDVSGFTALVLATAQGSLPTVKI 468
            PP+  A++   V +++ +L +G D    S    +TALH AA +G  +I   L+  GAD +A++E G+TPL  A    H   VE LL  G+++          ALH AA +G Y V  ALL   A+  A+D +G   +  A A      VK+
Sbjct:   33 PPIFTAIQRNNVQQVESMLDSGTDPG-SSDMLRNTALHQAAFYGYEKIIELLVAKGADINAVNEAGQTPLYSAIHADHVQAVEALLNHGASLSTKYTDNRYTALHLAALDGKYEVAEALLKKGANTKAKDANGKKPIDYAKATKDKTFVKL 182          
BLAST of mRNA_S-firma_F_contig1061.836.1 vs. uniprot
Match: A0A3B3H481_ORYLA (B-cell lymphoma 3 protein n=4 Tax=Oryzias TaxID=8089 RepID=A0A3B3H481_ORYLA)

HSP 1 Score: 82.8 bits (203), Expect = 2.100e-15
Identity = 56/166 (33.73%), Postives = 89/166 (53.61%), Query Frame = 1
Query:   13 EPPLLQAVEAGRVAELKYLLRAGADVNVRSPFNGSTALHLAAIHGRSRIASTLLKLGADTDALDE---VGETPLMKAAELGHQPVVETLLKAGSNVHVFSYGRGRAALHFAAGEGHYGVVLALLDHRADKNAQDVSGFTALVLATAQGSLPTVKILLKAGADLTIR 501
            + PL  AV   +   +  LL AGAD +     +G TALHL   + +    S LL   + +  L+     G TPL  A + GHQ + + LL AG++++      G++ L  A    + G+V  L+++R D N Q  SG TAL +A  +G +  V++LLK+GAD +++
Sbjct:  231 QTPLHLAVITKQATLVDALLGAGADPSALDR-HGQTALHLCCEYDQRDCLSALLSRSSSSPCLEARNFEGLTPLHMAVQQGHQDLAKMLLDAGADINAMDIKSGQSPLVHAVESNNAGMVHFLVENRCDVNRQSYSGNTALHVACGRGQVDIVRVLLKSGADSSLK 395          
BLAST of mRNA_S-firma_F_contig1061.836.1 vs. uniprot
Match: A0A7S3FZE7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3FZE7_9EUKA)

HSP 1 Score: 80.9 bits (198), Expect = 1.000e-14
Identity = 57/170 (33.53%), Postives = 85/170 (50.00%), Query Frame = 1
Query:   19 PLLQAVEAGRVAELKYLLRAGADVNVRSPFNGSTALHLAAIHGRSRIASTLLKLGADTDALDEVGETPLMKAAELGHQP---------VVETLLKAGSNVHVFSYGRGRAALHFAA---GEGHYGVVLALLDHRADKNAQDVSGFTALVLATAQGSLPTVKILLKAGADL 492
            PL+ A   G    +  LL  GA V+ R   +G+TALH+A      +I  +L++ GAD +A D  G TPL++ A+L             V+  LL  G++ +       R ALH+     G+     V  LL   AD +A+     T +V+A  QG+L  VK+LL+ GAD+
Sbjct:  207 PLMLASAKGSALAVDLLLEGGASVSKRKNKSGATALHIAVKGFHLQILKSLIRAGADVNATDAEGTTPLIECAKLKPSSPAQARARFLVLSFLLGEGADANKVDERHKRTALHYLCINGGDNCANAVKLLLSSGADIDARSEENLTPIVMAVHQGALQLVKLLLEQGADI 376          
BLAST of mRNA_S-firma_F_contig1061.836.1 vs. uniprot
Match: UPI0018DC736B (ankyrin repeat domain-containing protein n=1 Tax=Inhella proteolytica TaxID=2795029 RepID=UPI0018DC736B)

HSP 1 Score: 78.2 bits (191), Expect = 1.230e-14
Identity = 60/154 (38.96%), Postives = 80/154 (51.95%), Query Frame = 1
Query:   46 RVAELKYLLRAGADVNVRSPFNGSTALHLAAIHGRSRIASTLLK-LGADTDALDEVGETPLMKAAELGHQPVVETLLKAGSNVHVFSYGRGRAALHFAAGEGHYGVVLALLDHRADKNAQDVSGFTALVLATAQGSLPTVKILLKAGADLTIRS 504
            R A L+ LLR G D NV +P NG   LH A +H   +    LL     D +A +  GE PLM AA  G     + L++ G+ V      +   ALH+A      GV   LLD  AD NA+  +G T L++A   GSL +  +LLK GAD T+R+
Sbjct:   37 RSAVLEALLR-GMDPNVLAP-NGQRPLHWALMHESGQALDGLLADPRTDVEAENASGERPLMLAALRGRLAWAQLLVRHGAAVEPKRGQKTWGALHYACSGPDQGVSTWLLDQGADINARSENGSTPLMMAFGYGSLDSADVLLKRGADTTLRN 188          
BLAST of mRNA_S-firma_F_contig1061.836.1 vs. uniprot
Match: UPI0011EA480A (B-cell lymphoma 3 protein n=1 Tax=Archocentrus centrarchus TaxID=63155 RepID=UPI0011EA480A)

HSP 1 Score: 79.3 bits (194), Expect = 3.590e-14
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = 1
Query:   13 EPPLLQAVEAGRVAELKYLLRAGADVNVRSPFNGSTALHLAAIHGRSRIASTLLKLGADTDALD---EVGETPLMKAAELGHQPVVETLLKAGSNVHVFSYGRGRAALHFAAGEGHYGVVLALLDHRADKNAQDVSGFTALVLATAQGSLPTVKILLKAGADLTIRS 504
            + PL  AV   +   ++ LL+AGAD       NG TALHL   + +    S +L + +    L+     G +PL  A   GH+ +   LL AG++++      G++ L  A    +  +V  L+++R D N+Q  SG TAL  A  +G + TV++LLK+GAD ++++
Sbjct:  228 QTPLHLAVITKQADMVEALLKAGADPAALDR-NGQTALHLCCEYDQHNCLSVVLSMPSSATCLEIRNYEGLSPLHLAVLQGHKHLARMLLDAGADINAMDIKSGQSPLMHAVESNNIDMVHFLIENRCDVNSQSYSGNTALHSACGRGQVETVRLLLKSGADSSLKN 393          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1061.836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J9UWK9_BRAAE1.380e-2136.02Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
D7FVI9_ECTSI2.890e-1742.19Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
UPI001B3F70E53.330e-1734.34ankyrin repeat domain-containing protein n=1 Tax=D... [more]
A0A1H8JUZ4_9BURK6.110e-1734.94Uncharacterized protein n=1 Tax=Duganella sp. CF51... [more]
UPI0003007EBE2.810e-1635.85ankyrin repeat domain-containing protein n=1 Tax=N... [more]
A0A2E9FXI6_9RHOB1.240e-1534.44Uncharacterized protein n=1 Tax=Thalassobius sp. T... [more]
A0A3B3H481_ORYLA2.100e-1533.73B-cell lymphoma 3 protein n=4 Tax=Oryzias TaxID=80... [more]
A0A7S3FZE7_9EUKA1.000e-1433.53Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
UPI0018DC736B1.230e-1438.96ankyrin repeat domain-containing protein n=1 Tax=I... [more]
UPI0011EA480A3.590e-1432.34B-cell lymphoma 3 protein n=1 Tax=Archocentrus cen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1061contigS-firma_F_contig1061:8879..9382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FVI9
PFAMsAnk_2
Max annot lvl2759|Eukaryota
Evalue9.04e-25
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
COG categoryI
Hectar predicted targeting categoryother localisation
Exons1
Model size504
Cds size504
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.9328-CDS-S-firma_F_contig1061:8878..93821622815599.9328-CDS-S-firma_F_contig1061:8878..9382Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1061 8879..9382 -
1696949444.6998515-CDS-S-firma_F_contig1061:8878..93821696949444.6998515-CDS-S-firma_F_contig1061:8878..9382Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1061 8879..9382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1061.836.1prot_S-firma_F_contig1061.836.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1061 8879..9382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1061.836.1

>prot_S-firma_F_contig1061.836.1 ID=prot_S-firma_F_contig1061.836.1|Name=mRNA_S-firma_F_contig1061.836.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=168bp
MYEPEPPLLQAVEAGRVAELKYLLRAGADVNVRSPFNGSTALHLAAIHGR
SRIASTLLKLGADTDALDEVGETPLMKAAELGHQPVVETLLKAGSNVHVF
SYGRGRAALHFAAGEGHYGVVLALLDHRADKNAQDVSGFTALVLATAQGS
LPTVKILLKAGADLTIRS
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mRNA from alignment at S-firma_F_contig1061:8879..9382-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1061.836.1 ID=mRNA_S-firma_F_contig1061.836.1|Name=mRNA_S-firma_F_contig1061.836.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=504bp|location=Sequence derived from alignment at S-firma_F_contig1061:8879..9382- (Sphaerotrichia firma ET2_F female)
ATGTACGAGCCGGAGCCGCCGTTGCTGCAGGCTGTCGAAGCCGGGCGCGT AGCAGAATTGAAGTATTTGTTGAGGGCGGGCGCGGATGTGAATGTCCGCA GTCCGTTCAATGGCTCAACTGCCCTCCACCTTGCTGCCATTCATGGGCGT AGCCGCATAGCATCAACGCTCCTGAAACTCGGGGCGGACACAGACGCGCT CGACGAGGTCGGTGAAACACCACTGATGAAGGCCGCCGAACTTGGCCACC AGCCAGTCGTGGAGACTCTACTCAAGGCCGGCTCAAATGTCCACGTCTTC AGTTATGGCCGCGGCCGTGCTGCTCTCCACTTTGCTGCCGGTGAAGGGCA TTACGGAGTCGTGCTAGCCCTGTTGGACCATAGAGCGGATAAGAACGCCC AAGACGTTAGCGGGTTCACGGCACTGGTTTTGGCAACAGCACAAGGCTCG CTGCCTACCGTCAAGATTCTGCTCAAGGCTGGCGCCGATCTCACCATCCG CAGC
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Coding sequence (CDS) from alignment at S-firma_F_contig1061:8879..9382-

>mRNA_S-firma_F_contig1061.836.1 ID=mRNA_S-firma_F_contig1061.836.1|Name=mRNA_S-firma_F_contig1061.836.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1008bp|location=Sequence derived from alignment at S-firma_F_contig1061:8879..9382- (Sphaerotrichia firma ET2_F female)
ATGTACGAGCCGGAGCCGCCGTTGCTGCAGGCTGTCGAAGCCGGGCGCGT
AGCAGAATTGAAGTATTTGTTGAGGGCGGGCGCGGATGTGAATGTCCGCA
GTCCGTTCAATGGCTCAACTGCCCTCCACCTTGCTGCCATTCATGGGCGT
AGCCGCATAGCATCAACGCTCCTGAAACTCGGGGCGGACACAGACGCGCT
CGACGAGGTCGGTGAAACACCACTGATGAAGGCCGCCGAACTTGGCCACC
AGCCAGTCGTGGAGACTCTACTCAAGGCCGGCTCAAATGTCCACGTCTTC
AGTTATGGCCGCGGCCGTGCTGCTCTCCACTTTGCTGCCGGTGAAGGGCA
TTACGGAGTCGTGCTAGCCCTGTTGGACCATAGAGCGGATAAGAACGCCC
AAGACGTTAGCGGGTTCACGGCACTGGTTTTGGCAACAGCACAAGGCTCG
CTGCCTACCGTCAAGATTCTGCTCAAGGCTGGCGCCGATCTCACCATCCG
CAGCATGTACGAGCCGGAGCCGCCGTTGCTGCAGGCTGTCGAAGCCGGGC
GCGTAGCAGAATTGAAGTATTTGTTGAGGGCGGGCGCGGATGTGAATGTC
CGCAGTCCGTTCAATGGCTCAACTGCCCTCCACCTTGCTGCCATTCATGG
GCGTAGCCGCATAGCATCAACGCTCCTGAAACTCGGGGCGGACACAGACG
CGCTCGACGAGGTCGGTGAAACACCACTGATGAAGGCCGCCGAACTTGGC
CACCAGCCAGTCGTGGAGACTCTACTCAAGGCCGGCTCAAATGTCCACGT
CTTCAGTTATGGCCGCGGCCGTGCTGCTCTCCACTTTGCTGCCGGTGAAG
GGCATTACGGAGTCGTGCTAGCCCTGTTGGACCATAGAGCGGATAAGAAC
GCCCAAGACGTTAGCGGGTTCACGGCACTGGTTTTGGCAACAGCACAAGG
CTCGCTGCCTACCGTCAAGATTCTGCTCAAGGCTGGCGCCGATCTCACCA
TCCGCAGC
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