mRNA_S-firma_F_contig10475.667.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10475.667.1
Unique NamemRNA_S-firma_F_contig10475.667.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10475.667.1 vs. uniprot
Match: D7G251_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G251_ECTSI)

HSP 1 Score: 272 bits (696), Expect = 7.240e-88
Identity = 147/174 (84.48%), Postives = 149/174 (85.63%), Query Frame = 2 
Query:  338 HSSAPETRRLATARASSLVTSSMGRGRAASVTESRGASPMTPEASPPVQDQVTAAQRAKQEAHNDRIVATFNSVMLADGLKVLKHHRRSSKKAASRVIRFVPDYGGALVWDKPLRQPGAKASRVPLDAITQVELEARIVWISAGDERVGFETSKTEDADLMYQAICILVDRCHA 859
            HSS P TRRL TA  S    +S  R RA S TES  A    P  SP V+DQ T AQRAKQEAHNDRIVATFNSVMLADGLKVLKHHRRSSKKAASRVIRFVPDYGGALVWDKPLRQPGAKASRVPLDAITQVELEARIVWISAGDERVGFETSKTEDADLMYQAICILVDRCHA
Sbjct:   11 HSSTPVTRRLVTAEVSPPEATSTERERAGSPTESPAARESAP--SPVVEDQATIAQRAKQEAHNDRIVATFNSVMLADGLKVLKHHRRSSKKAASRVIRFVPDYGGALVWDKPLRQPGAKASRVPLDAITQVELEARIVWISAGDERVGFETSKTEDADLMYQAICILVDRCHA 182
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BLAST of mRNA_S-firma_F_contig10475.667.1 vs. uniprot
Match: A0A6H5JPJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ4_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.730e-45
Identity = 102/180 (56.67%), Postives = 120/180 (66.67%), Query Frame = 2 
Query:  347 APETRRLATARASSLVTSSMGRGRAASVTESRGASPMTPEASPPVQDQVTAAQRA-------KQEAHNDRIVATFNSVMLADGLKVLKHHRRSSKKAASRVIRFVPDY--GGALVWDKPLRQPGAKASRVPLDAITQVELEARIVWISAGDERVGFETSKTEDADLMYQAICILVDRCHA 859
            AP T+R+ T R S LVT S+  G + S     G   + P         +TA+ R        +++ H+D +VA FN VMLADGLKVLK   RS K A SRVIRFVPDY  GG+LVW KP+   GAK SRVPLD  TQVELEA IVWISA DERVG ETSK EDA++MY+AICILVDRC+A
Sbjct:  173 APTTKRVVTTRTSYLVTVSVRGGTSCSGDGKPGGEFIDPG--------LTASGRPSDGHLTRREKVHDDHVVAVFNRVMLADGLKVLKQ-LRSCKAACSRVIRFVPDYLFGGSLVWHKPVNPQGAKNSRVPLDVTTQVELEACIVWISASDERVGCETSKLEDAEIMYEAICILVDRCNA 343
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10475.667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G251_ECTSI7.240e-8884.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JPJ4_9PHAE1.730e-4556.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10475contigS-firma_F_contig10475:1490..5037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1164
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10475.667.1prot_S-firma_F_contig10475.667.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10475 1792..4634 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.9993265-UTR-S-firma_F_contig10475:1489..17911622815581.9993265-UTR-S-firma_F_contig10475:1489..1791Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10475 1490..1791 -
1696949432.6286974-UTR-S-firma_F_contig10475:1489..17911696949432.6286974-UTR-S-firma_F_contig10475:1489..1791Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10475 1490..1791 -
1622815582.0726044-UTR-S-firma_F_contig10475:4634..50371622815582.0726044-UTR-S-firma_F_contig10475:4634..5037Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10475 4635..5037 -
1696949432.6910286-UTR-S-firma_F_contig10475:4634..50371696949432.6910286-UTR-S-firma_F_contig10475:4634..5037Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10475 4635..5037 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.0138273-CDS-S-firma_F_contig10475:1791..19111622815582.0138273-CDS-S-firma_F_contig10475:1791..1911Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10475 1792..1911 -
1696949432.6406715-CDS-S-firma_F_contig10475:1791..19111696949432.6406715-CDS-S-firma_F_contig10475:1791..1911Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10475 1792..1911 -
1622815582.0300434-CDS-S-firma_F_contig10475:2953..31391622815582.0300434-CDS-S-firma_F_contig10475:2953..3139Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10475 2954..3139 -
1696949432.6506522-CDS-S-firma_F_contig10475:2953..31391696949432.6506522-CDS-S-firma_F_contig10475:2953..3139Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10475 2954..3139 -
1622815582.046313-CDS-S-firma_F_contig10475:3447..35531622815582.046313-CDS-S-firma_F_contig10475:3447..3553Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10475 3448..3553 -
1696949432.6598673-CDS-S-firma_F_contig10475:3447..35531696949432.6598673-CDS-S-firma_F_contig10475:3447..3553Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10475 3448..3553 -
1622815582.0613348-CDS-S-firma_F_contig10475:4587..46341622815582.0613348-CDS-S-firma_F_contig10475:4587..4634Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10475 4588..4634 -
1696949432.6813529-CDS-S-firma_F_contig10475:4587..46341696949432.6813529-CDS-S-firma_F_contig10475:4587..4634Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10475 4588..4634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10475.667.1

>prot_S-firma_F_contig10475.667.1 ID=prot_S-firma_F_contig10475.667.1|Name=mRNA_S-firma_F_contig10475.667.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=153bp
MGRGRAASVTESRGASPMTPEASPPVQDQVTAAQRAKQEAHNDRIVATFN
SVMLADGLKVLKHHRRSSKKAASRVIRFVPDYGGALVWDKPLRQPGAKAS
RVPLDAITQVELEARIVWISAGDERVGFETSKTEDADLMYQAICILVDRC
HA*
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mRNA from alignment at S-firma_F_contig10475:1490..5037-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10475.667.1 ID=mRNA_S-firma_F_contig10475.667.1|Name=mRNA_S-firma_F_contig10475.667.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3548bp|location=Sequence derived from alignment at S-firma_F_contig10475:1490..5037- (Sphaerotrichia firma ET2_F female)
GGGATCATTTTTTGAGGACAAAAAAAAAAAAAAGGCCTTTTTTGTGGGGG
TTGCAACACAGGTGAGTGATAGTTGCGCCTCCGCACTATCCCCAGATTAG
AATCACACGCTCCGACCGACCTACGAAATGGTGGACGATGTTTGACGTAG
TGCTACGTCCACACCGCCCTCCCTGCGCAAATCTGAAAAATTTCGTTTTC
AACCTCTGAACCTCTGCCTGCTTGCATCTCGACTCTCGTCGAGTTTTCGC
GAGCGTTGTTGTACTGACACTGCTGTTTTTTCTCATGTATTAAATGAACG
AACGAACGAACGAACGATCGAACGATCGAACGAACGACACAGCAGCGCCC
CGGAGACGAGACGCTTGGCGACAGCGAGAGCGTCGTCTCTCGTGACGAGT
TCGATGGGGCGGGGGAGAGCGGCTTCGGTGACGGAAAGCCGGGGGGCGAG
GTGAGAGAGAAAGAGATGGAAGGAGAAAGGGCAGTGGCGAGTCCTTGTTG
GTCCATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGCTGCTGCTGCTT
TCTGTTGTTTTACCCAGTATATCTTACAACCTGCAACACCAGCAGCACCA
ACAAGAACAACACCGCACTATCGTACTATCTATTCCGTTGCGTACGGGGA
ATAGGTGGCACCAACTATCCCTGTCACACCCTAGCTGGCTAGTCCAAGCG
CACAGCCTTTTGCCAGTTGTTGCTGTGTGTTTCTCTATCGCGCGGATTGG
TTTTGATGAAAGTACGCAGGTCTGGCGTCCCGAAACCTTGTTGTTGGTAA
CGGAGGTGTCCGCATGGAAGTCTGACTTATGACCGCTCAAACCATTCACC
AAATAGGGTCTGATGACGCCGTCGAAATTTGATGATATGATGTCCTCTTC
TAGTCCCACTGATCATCGGGTGCTGTTGCGGTTGCCTGCCAATGACGAAC
TGACAACATCCCGTTGGCCGGGATATTGGTCCCCCCCCCCCCCATGTGAT
TCGGTTTCTGCGGCGATTCTCGCACTTCTCGCGCTCTGGGGTCATGTCCG
TTGGGTCGAACGCGTGGCGTTTTACCAGAGGTGAGTTGTGGTGCTGCGGC
ACACACACGAACACACATATTCGCACACACATATCGACCCTGTTGGCCGA
CAGCATAGACATTTATGATGCGAGCATGCAGTCGTTCTCGTCCTCGGAGA
CGCCGCTTTCTTTGCTCCTTCTTGTTTCACGACGTGCGTACCTTCGCTTA
CGGCCGATGACGAAGGCGGCCCTCATGTTGCATGCACAGGAAGTCTCCCC
CCACGACCCACGTTTAGTGGGCTGGATGGAGTGTCGTAGCAAAACCGTCG
CGCCAGTTTTGTTTTGAACCGTTGTCGCCTTTCTGTCTCCGTAGCCCCTC
CCCTTTGCGCTTGCCTTGCCTTCCTTTTGTCATGTGATGTTCAATGCACG
TGCGCGCTCTTGCCTCTGTTTTCTTGTTTTCCAGCCCGATGACCCCCGAG
GCCTCGCCGCCGGTGCAAGACCAGGTGACGGCCGCCCAACGCGCCAAGCA
GGAAGCACACAACGACCGCATCGTGGCCACGTTCAACAGCGTAAGTTTTT
TTTTTCGATCCTCGGTTTTGGTTTTTGTTGTAGACTCCAGCCAGTCTTCT
CTCACTCCACTAGCCTTTCCGTCAAAACTATACTCCAATGAGGGCATGCG
CTGGGTTGTTGTGTTTTGGTCGTTGCTTGTGCGCCTAATCTCAAGTTTTC
GATAGCGCACAAGCTTGCGGCTTGCTGTTCTCCGACGCGTGTCGCCGTCG
AGAAGGCCAACCAACAACTTTCCTACGCCCGTATGTACAAAACCATTCAA
CCTGCGTCTGTCAAACTTACATGCTGCCGCCGTTCGCCTTGCTCGCAGGT
CATGCTCGCGGACGGCCTCAAGGTTTTGAAGCACCACCGCCGAAGCTCGA
AGAAGGCGGCGAGCCGCGTAATCCGCTTCGTGCCCGACTACGGAGGGGCT
CTGGTGTGGGACAAGCCTCTTCGCCAGCCCGGCGCAAAGGCCAGCAGGGT
CCCGCTTGACGCCATCACCCAGGTCGAGCTGGAGGTGAGATGAGTGGCAC
ACGGGTGACCCCAAAACGCCTCAAAAACTCGCGTGGACACACACCTTTTT
TTGTTTTTTTGTTTTGTGTTTTGCCTCGTCTGCCGTTCCTTCGCGCGCAA
CGCGCGTTCCTGGTTTGGCCCGATGCATCGCTTAGGCGCGGAGTACGATT
TCTGCGCCTCCCGCGCGCCCCCTGCCGACTCTTTGCGTTGAGAAGTGCGT
CCCCTGACTTTGTTCAGAGTATCCTACCTCCGACCTTTCTGTGTGCCTGA
TGCCATGCGTTGCCCAAAAATCTTGGTGTATTTTTTGCCCTTTTTTGCCA
CTTTTCCTCGCTAAGAGCTCGGAATCAGATTTTCGCATCTCAGGGATCTC
CGAAGCTCTCGTCCAGAGGTCTACAGTTCAACTGTCCAATCTGGCGCGTT
TGGGGTTTGGTTTTTGGCCTCGAAGCAAGATTTTGCTACATTTAGCCAAG
ATTTGGATATTTTGCACATGTTGGCTGAATATTTGCGCGAACACGACTTC
TGGGCCAAATCTTGGCCAAATGTAGCAAAATCTTGCTTCGAGGCCAAAAA
TCAAACCCCGAACGCGCCAGATTGGACAGTTGATCTGTACACCTCTGGAA
GAGAGCTTCGGAGATCCCTGAGATGCGAAATCTGATTTCGAGCCCTTGGC
GAGGAAAATGTGGCGAAAGAGGGCAAAACACACCAGGATTTTGATTTTCA
AGATTTTTCTTCTAAAAACATGGGTCTAAGTCATACCCGTCCAGGCTCTG
CTTTGTTGCGCCTTCCTCTGGTGTTTTACCGCTTGCCTGCCTTGCACCTC
GCTAGCCCATAGCAATAGCGGGGTTCCTTCTTTGCGAGACCGGCGTTTTC
ATGATGCCGTCTTTGCGCTGCTGCTACCATGCAAGCGATTCTGCTTGGAG
CCAATCACGCCGTTTTTTCGTATCACCGGGCCACGTGTACCAATTTGTTT
GACGATGCGATACACCATGCCCCCAGCTTACCCCATCCCCGTCTCCCGCC
GGTTTTTTTCTCGTGTGGCCGGCCAGGCGCGCATCGTGTGGATCTCTGCG
GGCGACGAGCGTGTCGGATTTGAGACATCCAAGACAGAGGACGCCGACCT
CATGTACCAGGCGATCTGCATCCTCGTGGACAGGTGCCACGCATGAGCCC
CGACACAATAGGTCGCGGGGGGAGAGGGGGGCGCGTACTCGATCTAGTTC
TCTGCGCAGTCAAGCTCACGCTCGGGCATAACCGTGCTACGGTACGTGCC
ATGGGACCACGAGCACGGTGGGGGAGGGGCGCATGAGGCATGGGTGGATG
GGCTAAATTTAGCGGGCGAACGTCACGGGCGATGTCGTCCGTGCCTTCAA
CGGTTGCTCGATGCGTGTTGGCTCTGAACCAGGGCCGTGCTTGAGCTCGA
GAGCAGCCTTGGCTCGGCGCGCCGTTGCTCTGAAAAATCGGTGCGCCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10475:1490..5037-

>mRNA_S-firma_F_contig10475.667.1 ID=mRNA_S-firma_F_contig10475.667.1|Name=mRNA_S-firma_F_contig10475.667.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=918bp|location=Sequence derived from alignment at S-firma_F_contig10475:1490..5037- (Sphaerotrichia firma ET2_F female)
ATGGGGCGGGGGAGAGCGGCTTCGGTGACGGAAAGCCGGGGGGCGAGATG
GGGCGGGGGAGAGCGGCTTCGGTGACGGAAAGCCGGGGGGCGAGCCCGAT
GACCCCCGAGGCCTCGCCGCCGGTGCAAGACCAGGTGACGGCCGCCCAAC
GCGCCAAGCAGGAAGCACACAACGACCGCATCGTGGCCACGTTCAACAGC
CCCGATGACCCCCGAGGCCTCGCCGCCGGTGCAAGACCAGGTGACGGCCG
CCCAACGCGCCAAGCAGGAAGCACACAACGACCGCATCGTGGCCACGTTC
AACAGCGTCATGCTCGCGGACGGCCTCAAGGTTTTGAAGCACCACCGCCG
AAGCTCGAAGAAGGCGGCGAGCCGCGTAATCCGCTTCGTGCCCGACTACG
GAGGGGCTCTGGTGTGGGACAAGCCTCTTCGCCAGCCCGGCGCAAAGGCC
AGCAGGGTCCCGCTTGACGCCATCACCCAGGTCGAGCTGGAGGTCATGCT
CGCGGACGGCCTCAAGGTTTTGAAGCACCACCGCCGAAGCTCGAAGAAGG
CGGCGAGCCGCGTAATCCGCTTCGTGCCCGACTACGGAGGGGCTCTGGTG
TGGGACAAGCCTCTTCGCCAGCCCGGCGCAAAGGCCAGCAGGGTCCCGCT
TGACGCCATCACCCAGGTCGAGCTGGAGGCGCGCATCGTGTGGATCTCTG
CGGGCGACGAGCGTGTCGGATTTGAGACATCCAAGACAGAGGACGCCGAC
CTCATGTACCAGGCGATCTGCATCCTCGTGGACAGGTGCCACGCATGAGC
GCGCATCGTGTGGATCTCTGCGGGCGACGAGCGTGTCGGATTTGAGACAT
CCAAGACAGAGGACGCCGACCTCATGTACCAGGCGATCTGCATCCTCGTG
GACAGGTGCCACGCATGA
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