prot_S-firma_F_contig10000.62.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10000.62.1
Unique Nameprot_S-firma_F_contig10000.62.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length291
Homology
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BLAST of mRNA_S-firma_F_contig10000.62.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 6.240e-8
Identity = 81/279 (29.03%), Postives = 117/279 (41.94%), Query Frame = 0 
Query:   24 EAKWLALYTRWKATRSVAKRDKTRYNVMKNQLTIARALQKEHKLECKQSFINVVTNLQLGVGAKRVAAAKARRKFDKAASALGKVERRLGNV---------CEDETN-DSDKNSGSGDDWSSGESSGDMGS-WFSEDELETDEDEAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXRVEALKVAAKETKRTCRRLEQASDVANGGFAGEXXXXXXXXXSGGNAAFKAAQDGRIEAIQAWKAYKHAQRALMKAYGQAAGDMDIEGASDEESDCDSEGWEGW 291
            E +  A+  R    RS+AK+ K RY  +K +   A+ L+ +     +  +   +T L   + A RVAAA ARRK+DKA +A  ++ RR+  +         CED ++ D D +S +         SG MG  W S DEL +DE    GT                           V   +  A   KRT   L + SD  N     +             A+    Q  R  A++AWK YK+A R++ + Y +    MDI+G    E   DS GW  W
Sbjct:  378 EEELEAVTKREVEARSIAKKFKARYVRLKAESAHAQYLRDKDARSAQNDYTAALTMLNRTLKAGRVAAAVARRKYDKAVAATSRISRRIRKLRAGIPVDVSCEDNSDFDLDSDSST--------RSGCMGDDWLSTDELSSDE----GTKEEVEAAVKKAVTTATQGHEKQKRH--VLVCRAGAMGAKRTYNTLLKISDALNSSTREDG--------EAAEASINETQTTRTAAVEAWKKYKNADRSMQEEY-EGFDTMDIDGGL--EDPYDSTGWADW 631
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10000.62.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K454_9PHAE6.240e-829.03SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 189..209

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10000contigS-firma_F_contig10000:2852..5402 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10000.62.1mRNA_S-firma_F_contig10000.62.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10000 2852..5404 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10000.62.1 ID=prot_S-firma_F_contig10000.62.1|Name=mRNA_S-firma_F_contig10000.62.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=291bp
EETAEPGDASGQREGTSGAGDGAEAKWLALYTRWKATRSVAKRDKTRYNV
MKNQLTIARALQKEHKLECKQSFINVVTNLQLGVGAKRVAAAKARRKFDK
AASALGKVERRLGNVCEDETNDSDKNSGSGDDWSSGESSGDMGSWFSEDE
LETDEDEAGGTDATAAVTAAVAAAEAELAGARRDLAGRVEALKVAAKETK
RTCRRLEQASDVANGGFAGEGEGEDEDDGSGGNAAFKAAQDGRIEAIQAW
KAYKHAQRALMKAYGQAAGDMDIEGASDEESDCDSEGWEGW
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