mRNA_S-firma_F_contig10000.62.1 (mRNA) Sphaerotrichia firma ET2_F female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10000.62.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 6.240e-8 Identity = 81/279 (29.03%), Postives = 117/279 (41.94%), Query Frame = 1 Query: 70 EAKWLALYTRWKATRSVAKRDKTRYNVMKNQLTIARALQKEHKLECKQSFINVVTNLQLGVGAKRVAAAKARRKFDKAASALGKVERRLGNV---------CEDETN-DSDKNSGSGDDWSSGESSGDMGS-WFSEDELETDEDEAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXRVEALKVAAKETKRTCRRLEQASDVANGGFAGEXXXXXXXXXSGGNAAFKAAQDGRIEAIQAWKAYKHAQRALMKAYGQAAGDMDIEGASDEESDCDSEGWEGW 873
E + A+ R RS+AK+ K RY +K + A+ L+ + + + +T L + A RVAAA ARRK+DKA +A ++ RR+ + CED ++ D D +S + SG MG W S DEL +DE GT V + A KRT L + SD N + A+ Q R A++AWK YK+A R++ + Y + MDI+G E DS GW W
Sbjct: 378 EEELEAVTKREVEARSIAKKFKARYVRLKAESAHAQYLRDKDARSAQNDYTAALTMLNRTLKAGRVAAAVARRKYDKAVAATSRISRRIRKLRAGIPVDVSCEDNSDFDLDSDSST--------RSGCMGDDWLSTDELSSDE----GTKEEVEAAVKKAVTTATQGHEKQKRH--VLVCRAGAMGAKRTYNTLLKISDALNSSTREDG--------EAAEASINETQTTRTAAVEAWKKYKNADRSMQEEY-EGFDTMDIDGGL--EDPYDSTGWADW 631 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10000.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10000.62.1 >prot_S-firma_F_contig10000.62.1 ID=prot_S-firma_F_contig10000.62.1|Name=mRNA_S-firma_F_contig10000.62.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=291bp EETAEPGDASGQREGTSGAGDGAEAKWLALYTRWKATRSVAKRDKTRYNVback to top mRNA from alignment at S-firma_F_contig10000:2852..5404+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10000.62.1 ID=mRNA_S-firma_F_contig10000.62.1|Name=mRNA_S-firma_F_contig10000.62.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2553bp|location=Sequence derived from alignment at S-firma_F_contig10000:2852..5404+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10000:2852..5404+ >mRNA_S-firma_F_contig10000.62.1 ID=mRNA_S-firma_F_contig10000.62.1|Name=mRNA_S-firma_F_contig10000.62.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1746bp|location=Sequence derived from alignment at S-firma_F_contig10000:2852..5404+ (Sphaerotrichia firma ET2_F female)back to top |