mRNA_S-firma_F_contig10000.62.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10000.62.1
Unique NamemRNA_S-firma_F_contig10000.62.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10000.62.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 6.240e-8
Identity = 81/279 (29.03%), Postives = 117/279 (41.94%), Query Frame = 1 
Query:   70 EAKWLALYTRWKATRSVAKRDKTRYNVMKNQLTIARALQKEHKLECKQSFINVVTNLQLGVGAKRVAAAKARRKFDKAASALGKVERRLGNV---------CEDETN-DSDKNSGSGDDWSSGESSGDMGS-WFSEDELETDEDEAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXRVEALKVAAKETKRTCRRLEQASDVANGGFAGEXXXXXXXXXSGGNAAFKAAQDGRIEAIQAWKAYKHAQRALMKAYGQAAGDMDIEGASDEESDCDSEGWEGW 873
            E +  A+  R    RS+AK+ K RY  +K +   A+ L+ +     +  +   +T L   + A RVAAA ARRK+DKA +A  ++ RR+  +         CED ++ D D +S +         SG MG  W S DEL +DE    GT                           V   +  A   KRT   L + SD  N     +             A+    Q  R  A++AWK YK+A R++ + Y +    MDI+G    E   DS GW  W
Sbjct:  378 EEELEAVTKREVEARSIAKKFKARYVRLKAESAHAQYLRDKDARSAQNDYTAALTMLNRTLKAGRVAAAVARRKYDKAVAATSRISRRIRKLRAGIPVDVSCEDNSDFDLDSDSST--------RSGCMGDDWLSTDELSSDE----GTKEEVEAAVKKAVTTATQGHEKQKRH--VLVCRAGAMGAKRTYNTLLKISDALNSSTREDG--------EAAEASINETQTTRTAAVEAWKKYKNADRSMQEEY-EGFDTMDIDGGL--EDPYDSTGWADW 631
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10000.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K454_9PHAE6.240e-829.03SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10000contigS-firma_F_contig10000:2852..5404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size876
Cds size873
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.0736082-CDS-S-firma_F_contig10000:2851..29231622815524.0736082-CDS-S-firma_F_contig10000:2851..2923Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10000 2852..2923 +
1696949386.5753355-CDS-S-firma_F_contig10000:2851..29231696949386.5753355-CDS-S-firma_F_contig10000:2851..2923Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10000 2852..2923 +
1622815524.0861568-CDS-S-firma_F_contig10000:3082..31691622815524.0861568-CDS-S-firma_F_contig10000:3082..3169Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10000 3083..3169 +
1696949386.586604-CDS-S-firma_F_contig10000:3082..31691696949386.586604-CDS-S-firma_F_contig10000:3082..3169Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10000 3083..3169 +
1622815524.1004548-CDS-S-firma_F_contig10000:3369..35521622815524.1004548-CDS-S-firma_F_contig10000:3369..3552Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10000 3370..3552 +
1696949386.623027-CDS-S-firma_F_contig10000:3369..35521696949386.623027-CDS-S-firma_F_contig10000:3369..3552Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10000 3370..3552 +
1622815524.1136732-CDS-S-firma_F_contig10000:3816..39401622815524.1136732-CDS-S-firma_F_contig10000:3816..3940Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10000 3817..3940 +
1696949386.6320648-CDS-S-firma_F_contig10000:3816..39401696949386.6320648-CDS-S-firma_F_contig10000:3816..3940Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10000 3817..3940 +
1622815524.133102-CDS-S-firma_F_contig10000:4576..47341622815524.133102-CDS-S-firma_F_contig10000:4576..4734Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10000 4577..4734 +
1696949386.6408613-CDS-S-firma_F_contig10000:4576..47341696949386.6408613-CDS-S-firma_F_contig10000:4576..4734Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10000 4577..4734 +
1622815524.1457803-CDS-S-firma_F_contig10000:4903..50651622815524.1457803-CDS-S-firma_F_contig10000:4903..5065Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10000 4904..5065 +
1696949386.6598127-CDS-S-firma_F_contig10000:4903..50651696949386.6598127-CDS-S-firma_F_contig10000:4903..5065Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10000 4904..5065 +
1622815524.157239-CDS-S-firma_F_contig10000:5315..54021622815524.157239-CDS-S-firma_F_contig10000:5315..5402Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10000 5316..5402 +
1696949386.6814618-CDS-S-firma_F_contig10000:5315..54021696949386.6814618-CDS-S-firma_F_contig10000:5315..5402Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10000 5316..5402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10000.62.1prot_S-firma_F_contig10000.62.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10000 2852..5402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10000.62.1

>prot_S-firma_F_contig10000.62.1 ID=prot_S-firma_F_contig10000.62.1|Name=mRNA_S-firma_F_contig10000.62.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=291bp
EETAEPGDASGQREGTSGAGDGAEAKWLALYTRWKATRSVAKRDKTRYNV
MKNQLTIARALQKEHKLECKQSFINVVTNLQLGVGAKRVAAAKARRKFDK
AASALGKVERRLGNVCEDETNDSDKNSGSGDDWSSGESSGDMGSWFSEDE
LETDEDEAGGTDATAAVTAAVAAAEAELAGARRDLAGRVEALKVAAKETK
RTCRRLEQASDVANGGFAGEGEGEDEDDGSGGNAAFKAAQDGRIEAIQAW
KAYKHAQRALMKAYGQAAGDMDIEGASDEESDCDSEGWEGW
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mRNA from alignment at S-firma_F_contig10000:2852..5404+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10000.62.1 ID=mRNA_S-firma_F_contig10000.62.1|Name=mRNA_S-firma_F_contig10000.62.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2553bp|location=Sequence derived from alignment at S-firma_F_contig10000:2852..5404+ (Sphaerotrichia firma ET2_F female)
GAGGAGACGGCGGAGCCGGGGGACGCTTCAGGACAGAGGGAGGGGACATC
GGGTGCCGGCGACGGTGCCGAGGTACTATAACCGTAGAGGGCTGTCTTTG
TCACAAGTTTGATTTGCCCCTTAAGGTGGTCTAATCGCCGTCGAAATTTC
CTCTGAGTTAAAACTCTCCTGCACACAGATGTGTCCGTTGCCTGTGTGAT
GCCCTTACCCCTCTCCGGACGCTTCCGTCAGGCAAAGTGGTTGGCCTTAT
ATACGAGGTGGAAGGCCACGAGGAGCGTCGCGAAAAGGGACAAGACCAGA
TACAACGTCATGAAGAATGTGAGGAGAAATTATGCGCCTACTGTACCCCA
AAGAAAATCAAAAACATTTCGTCCCAATCGTGGTTTCAAAGTAGTACCTC
GGCCTCGCTGGGGGAGCGGGCCGCTCCACCTCTGGCAAAGCCAACGGCGG
GCCGTAGTGCGGGCGAGACTGACTGAATTTTATTCGTTTGTCGTCATCGC
ACCGTCCGTGAAACGTAGCAACTCACCATCGCCCGAGCTTTGCAGAAAGA
GCACAAGCTGGAGTGCAAGCAGAGCTTCATCAACGTCGTGACGAACCTTC
AACTGGGTGTTGGTGCCAAGAGGGTGGCCGCCGCAAAGGCTCGGCGGAAG
TTTGACAAGGCCGCAAGCGCCCTGGGCAAAGTGGAGCGGAGATTAGGGAA
TGTGAGTCGAAAGCTGGCGTGCTTTGTACCCACCCTCCCTCGGCTAGTCG
GGTTGCTTGTCAAGTGTGTACTTGTCCTGGAGGTAACTTTCTCAGTGTGA
GGGTTCTGTCGAGCTGATAGAGGTCGGTACATGTGGGTTCATCTTCACCG
GCCTTTCTTGCCGCAAACAGGACACAACAACGGTGATACGTAGTTTCCGC
TCGTTCAAGTCCCGTGTGGATTCGACCACCACATTGTTATCCGCGGGCGG
TTCGACGTGCGTCAGGTATGTGAGGACGAAACGAACGACTCGGACAAGAA
CAGCGGCAGTGGCGACGACTGGAGCAGTGGAGAGAGCAGTGGAGACATGG
GTAGCTGGTTCAGCGAAGACGAGCTGGAGACGGATGAAGGTTAGACCACC
CACTGCTGACAACATCAACCAATGTCGGTACAGATAGACCATGAGCGAAA
GAGGAGTCTTGGACGTGTCTACCATCGTATCCTCTGAGGTTTAGTTTGTC
CCGGGGGGGTAGTTGGTTTTGTTTAAACAAACTCCCTACCAAACTCAAAG
GTAGAGGGGAGATAATTCACCCCCAAGGCGAAGGGTCCCCGCGGGCTTTG
TTTGGTTTCTGTTGTAGTGCTCCTACGTACAAAGCTCATGGTGCTCCATT
GTATTGATGTGAACACACCGCTGCACCAAACACCGATAACGACAACATCA
ACAACATTGTTTTCATGTTACGGGTACACACAAAATGCTGCCACAATTGA
ATGCCGTGGGTTGTGCCGTGGATTTGTGTGCGAACCTCCCGTGAGGCGCC
TCAACATTTGACCAAAAAAAGAACACCGCGGGGCAAACTGAAAAGTAGAG
GTCAAAGGTAGAAGGGTGGGGAAAAAAACACACGGGGCAGACACAACGTT
TTTGCGATCCCCAGCCGGTGGGAGATGGTAATGACACACACGTGTGTGGG
GTGGAGGGCTGAGTCAGAGGAATCTACTGTATACACCCAGTGAACCGCTC
CTTCTACCGCATTTGCGCCCCAAAGACGAAGCAGGCGGTACAGACGCGAC
CGCGGCAGTAACAGCGGCAGTAGCAGCGGCAGAAGCGGAGCTGGCGGGCG
CCCGTAGGGACCTGGCGGGCCGCGTCGAGGCTCTTAAAGTTGCCGCGAAG
GAGACCAAGAGAACGTGCAGGCGGTTGGAACAGGTGATTGTGGGTGGGTA
GCTTCGAGGGGCGCGGAGATATTGGTTCCACGTTAATTGAGGCTCGAGCT
GTGACACAGTGTATGTAGGTCAACCCTCTCGTTCAGACGTGCACGGTTAC
ATATTGGGATACCTCTTGCTCCGCGCGTGTGGCTGTCTGGGTGTGTATTT
AGGCCTCTGATGTTGCGAATGGCGGTTTTGCGGGAGAGGGGGAGGGGGAA
GACGAGGACGACGGTTCTGGCGGCAATGCAGCCTTCAAAGCCGCGCAGGA
TGGGAGAATCGAGGCAATCCAAGCCTGGAAGGCTTACAAACATGCTCAGC
GAGCCCTCATGAAGGTGGGTACAGAGCGGAAGTTTTGTGTGCGGTAAAGG
GCCCAACGGTGGGGTCTCGAATTTCTTGGTGCATACAGTCTTCAGCGTGC
AACGACAAATAATCCATTCCCGGACTTGTTGATTTATTTGCTGATACTCT
GGAGGAACCGTCACGTAACGTCAACTCCTGCACTATTAATATTCGTGTTT
AGAGTGCCAGTCGTGTCGACGATGATTCATACCCTTTGTCGTAATACTCG
CGCACGTGCCGCAGGCGTACGGACAAGCCGCCGGCGATATGGACATCGAA
GGCGCCAGTGACGAAGAAAGCGACTGCGACTCAGAGGGTTGGGAGGGTTG
GGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10000:2852..5404+

>mRNA_S-firma_F_contig10000.62.1 ID=mRNA_S-firma_F_contig10000.62.1|Name=mRNA_S-firma_F_contig10000.62.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1746bp|location=Sequence derived from alignment at S-firma_F_contig10000:2852..5404+ (Sphaerotrichia firma ET2_F female)
GAGGAGACGGCGGAGCCGGGGGACGCTTCAGGACAGAGGGAGGGGACATC
GGGTGCCGGCGACGGTGCCGAGGAGGAGACGGCGGAGCCGGGGGACGCTT
CAGGACAGAGGGAGGGGACATCGGGTGCCGGCGACGGTGCCGAGGCAAAG
TGGTTGGCCTTATATACGAGGTGGAAGGCCACGAGGAGCGTCGCGAAAAG
GGACAAGACCAGATACAACGTCATGAAGAATGCAAAGTGGTTGGCCTTAT
ATACGAGGTGGAAGGCCACGAGGAGCGTCGCGAAAAGGGACAAGACCAGA
TACAACGTCATGAAGAATCAACTCACCATCGCCCGAGCTTTGCAGAAAGA
GCACAAGCTGGAGTGCAAGCAGAGCTTCATCAACGTCGTGACGAACCTTC
AACTGGGTGTTGGTGCCAAGAGGGTGGCCGCCGCAAAGGCTCGGCGGAAG
TTTGACAAGGCCGCAAGCGCCCTGGGCAAAGTGGAGCGGAGATTAGGGAA
TCAACTCACCATCGCCCGAGCTTTGCAGAAAGAGCACAAGCTGGAGTGCA
AGCAGAGCTTCATCAACGTCGTGACGAACCTTCAACTGGGTGTTGGTGCC
AAGAGGGTGGCCGCCGCAAAGGCTCGGCGGAAGTTTGACAAGGCCGCAAG
CGCCCTGGGCAAAGTGGAGCGGAGATTAGGGAATGTATGTGAGGACGAAA
CGAACGACTCGGACAAGAACAGCGGCAGTGGCGACGACTGGAGCAGTGGA
GAGAGCAGTGGAGACATGGGTAGCTGGTTCAGCGAAGACGAGCTGGAGAC
GGATGAAGGTATGTGAGGACGAAACGAACGACTCGGACAAGAACAGCGGC
AGTGGCGACGACTGGAGCAGTGGAGAGAGCAGTGGAGACATGGGTAGCTG
GTTCAGCGAAGACGAGCTGGAGACGGATGAAGACGAAGCAGGCGGTACAG
ACGCGACCGCGGCAGTAACAGCGGCAGTAGCAGCGGCAGAAGCGGAGCTG
GCGGGCGCCCGTAGGGACCTGGCGGGCCGCGTCGAGGCTCTTAAAGTTGC
CGCGAAGGAGACCAAGAGAACGTGCAGGCGGTTGGAACAGACGAAGCAGG
CGGTACAGACGCGACCGCGGCAGTAACAGCGGCAGTAGCAGCGGCAGAAG
CGGAGCTGGCGGGCGCCCGTAGGGACCTGGCGGGCCGCGTCGAGGCTCTT
AAAGTTGCCGCGAAGGAGACCAAGAGAACGTGCAGGCGGTTGGAACAGGC
CTCTGATGTTGCGAATGGCGGTTTTGCGGGAGAGGGGGAGGGGGAAGACG
AGGACGACGGTTCTGGCGGCAATGCAGCCTTCAAAGCCGCGCAGGATGGG
AGAATCGAGGCAATCCAAGCCTGGAAGGCTTACAAACATGCTCAGCGAGC
CCTCATGAAGGCCTCTGATGTTGCGAATGGCGGTTTTGCGGGAGAGGGGG
AGGGGGAAGACGAGGACGACGGTTCTGGCGGCAATGCAGCCTTCAAAGCC
GCGCAGGATGGGAGAATCGAGGCAATCCAAGCCTGGAAGGCTTACAAACA
TGCTCAGCGAGCCCTCATGAAGGCGTACGGACAAGCCGCCGGCGATATGG
ACATCGAAGGCGCCAGTGACGAAGAAAGCGACTGCGACTCAGAGGGTTGG
GAGGGTTGGGCGTACGGACAAGCCGCCGGCGATATGGACATCGAAGGCGC
CAGTGACGAAGAAAGCGACTGCGACTCAGAGGGTTGGGAGGGTTGG
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