prot_S-firma_F_contig10000.62.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-firma_F_contig10000.62.1
Unique Name	prot_S-firma_F_contig10000.62.1
Type	polypeptide
Organism	Sphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length	291

Homology

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BLAST of mRNA_S-firma_F_contig10000.62.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 6.240e-8
Identity = 81/279 (29.03%), Postives = 117/279 (41.94%), Query Frame = 0

Query:   24 EAKWLALYTRWKATRSVAKRDKTRYNVMKNQLTIARALQKEHKLECKQSFINVVTNLQLGVGAKRVAAAKARRKFDKAASALGKVERRLGNV---------CEDETN-DSDKNSGSGDDWSSGESSGDMGS-WFSEDELETDEDEAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXRVEALKVAAKETKRTCRRLEQASDVANGGFAGEXXXXXXXXXSGGNAAFKAAQDGRIEAIQAWKAYKHAQRALMKAYGQAAGDMDIEGASDEESDCDSEGWEGW 291
            E +  A+  R    RS+AK+ K RY  +K +   A+ L+ +     +  +   +T L   + A RVAAA ARRK+DKA +A  ++ RR+  +         CED ++ D D +S +         SG MG  W S DEL +DE    GT                           V   +  A   KRT   L + SD  N     +             A+    Q  R  A++AWK YK+A R++ + Y +    MDI+G    E   DS GW  W
Sbjct:  378 EEELEAVTKREVEARSIAKKFKARYVRLKAESAHAQYLRDKDARSAQNDYTAALTMLNRTLKAGRVAAAVARRKYDKAVAATSRISRRIRKLRAGIPVDVSCEDNSDFDLDSDSST--------RSGCMGDDWLSTDELSSDE----GTKEEVEAAVKKAVTTATQGHEKQKRH--VLVCRAGAMGAKRTYNTLLKISDALNSSTREDG--------EAAEASINETQTTRTAAVEAWKKYKNADRSMQEEY-EGFDTMDIDGGL--EDPYDSTGWADW 631

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_F_contig10000.62.1 vs. uniprot

BLAST of mRNA_S-firma_F_contig10000.62.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1

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POSITION

0


Match Name	E-value	Identity	Description
A0A6H5K454_9PHAE	6.240e-8	29.03	SWIM-type domain-containing protein n=1 Tax=Ectoca...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29

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x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 189..209

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_F_contig10000	contig	S-firma_F_contig10000:2852..5402 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female	2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90	2022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_F_contig10000.62.1	mRNA_S-firma_F_contig10000.62.1	Sphaerotrichia firma ET2_F female	mRNA	S-firma_F_contig10000 2852..5404 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-firma_F_contig10000.62.1 ID=prot_S-firma_F_contig10000.62.1|Name=mRNA_S-firma_F_contig10000.62.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=291bp
EETAEPGDASGQREGTSGAGDGAEAKWLALYTRWKATRSVAKRDKTRYNV
MKNQLTIARALQKEHKLECKQSFINVVTNLQLGVGAKRVAAAKARRKFDK
AASALGKVERRLGNVCEDETNDSDKNSGSGDDWSSGESSGDMGSWFSEDE
LETDEDEAGGTDATAAVTAAVAAAEAELAGARRDLAGRVEALKVAAKETK
RTCRRLEQASDVANGGFAGEGEGEDEDDGSGGNAAFKAAQDGRIEAIQAW
KAYKHAQRALMKAYGQAAGDMDIEGASDEESDCDSEGWEGW