prot_S-firma_F_contig10000.61.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10000.61.1
Unique Nameprot_S-firma_F_contig10000.61.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length500
Homology
BLAST of mRNA_S-firma_F_contig10000.61.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 1.760e-50
Identity = 114/252 (45.24%), Postives = 145/252 (57.54%), Query Frame = 0
Query:  127 MRTE-WVAKFVSGDGNCAWRALAYAMWGTDEYWVQLKLVILAWCVANTELLLAEGRALYDDTKFYPERIHREYGGFKEGDDVSTSD---HRFKMLIASVEYYTSDTVWGSDLTMLMASQALRITVKILHPMDKKSRDVYDAEGRQP--VHGTGRKVDKCEDYRHSQVFLPDDAALIYRGVGTGESTRLIEEAAVALTGGMTRASANELADIPEINRDSICRAGCHFAAVLSTDGRNVPFPVFKVAPPLTREL 372
            MR E WVA +V GDGNC WR+LA  +W +DEYW QLKLV+LAW  A+ E L++EGR L D +  + + IH   G       V  +       +ML+ASV Y   DTVWG D T+L+ASQAL+ITVK+L P D   R   D     P  + G GRK DK +D R SQ FL DDA       G G   R++ EA V LT    +AS  EL ++ E+ + + C  G HFAAV   D    PFP+ + APPL + L
Sbjct:    1 MRKEGWVALWVRGDGNCCWRSLAKCLWESDEYWSQLKLVVLAWAAAHAEELVSEGRVLSDFSLHFSDDIHAGLGYAYSATCVGAAPSVAQTSRMLLASVAYDCEDTVWGGDFTLLLASQALKITVKLLSPNDVMVRK-RDESSATPGTIRGAGRKGDKVDDTRLSQTFLADDAVSCLHIQGGG---RMVAEATVVLTSCTGQASVGELDNLVEVTKSTACPRGVHFAAVSKKDRSTPPFPLVRAAPPLFQAL 248          
BLAST of mRNA_S-firma_F_contig10000.61.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.360e-39
Identity = 106/305 (34.75%), Postives = 155/305 (50.82%), Query Frame = 0
Query:   84 ITTNCTWRHVFDTPVGVLPLPLGREAEDARPYDYNATMIIPKTMRTEWVAKFVSGDGNCAWRALAYAMWGTDEYWVQLKLVILAWCVANTELLLAEGRALYDDTKF--YPERIHREYGGFKEGDDVSTSDHRF----KMLIASVEYYTSDTVWGSDLTMLMASQALRITVKILHPMDKKSR---DVYDAEGRQPVHGTGRKVDKCEDYRHSQVFLPDDAA--LIYRGVGTGESTRLIEEAAVALTGGMTRASAN-ELADIPEINRDSICRAGCHFAAVLSTDGR---NVPFPVFKVAPPLTRELD 373
            I   CTW  VF TP GV+P  + R  +    YD  ATMI+   +R  +VA +V GDGNC WR++A A+WGTDEYW QLKL +LAW   N E L+ EG AL+       Y + IH ++     G D    DHR      ML+ S+  ++++  WG  L  ++ ++   + +K+ HP D ++R   D   A  +      G   D+  D+R+S   +P      +I RGV   E   ++EE A+ +    +    +  L+DIP I  D+      HFAA++  D       PFP+ K  PPL  + D
Sbjct:   56 IAAECTWPKVFGTPEGVVPT-VARPGKGQEMYDPKATMILTPELRKTFVALWVEGDGNCFWRSMAKALWGTDEYWRQLKLAVLAWSAVNVEALVGEGGALFGRAGIIHYDDEIHAKH--IYRGPDGKV-DHRLDDDASMLLESIAKFSANRQWGGCLAGVLFTERTGLVLKMPHPFDMRARIRADTSGAAAKATASYGGGSEDEFGDHRYSFTKVPTAGRKEIILRGVSDEEDI-VVEEIAITMASYDSAVVGDGSLSDIPVIEADTNLNHLNHFAAIVCADPDVHVRRPFPMSKAGPPLHAKFD 355          
BLAST of mRNA_S-firma_F_contig10000.61.1 vs. uniprot
Match: A0A6H5JP78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP78_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.670e-37
Identity = 118/304 (38.82%), Postives = 152/304 (50.00%), Query Frame = 0
Query:  168 WCVANTELLLAEGRALYDDTKFYPERIHREYGGFKEG-DDVSTSDHRFKMLIASVEYYTSDTVWGSDLTMLMASQALRITVKILHPMDKKSRDVYDAEGR-QPVHGTGRKVD-KCEDYRHSQVFLPDDAALIYRGVGTGESTRLIEEAAVALTGGMTRASANELADIPEINRDSICRAGCHFAAVLSTDGRNVPFPVFKVAPPLTREL---------------DGRL------SKECDE---------ERAAYNRRRGIQPGSDEARAVAAXXXXXXXXXRQARKELSRANRQLALEERMRARQ 438
            W  AN E L++ GR L D TK Y   IH  +       DD +T  ++ KMLIASV  ++    WG DLTML+ASQALRITVK++  +D  SR   +A    +   G+ RK +   ED RHSQ FLP DA    R VG G+ T  + EA V LT   T+ASA EL ++ E+ + + C  GC FAAV   D    PFP+ + APPL +                 D R+      +  CD          E+AA+    G+QPG + A A            RQARK  +  NRQL L E   ARQ
Sbjct:    9 WPAANAEDLVSRGRILSDFTKNYSSDIHGAFAVTANRLDDAATVANKSKMLIASVADFSKPACWGGDLTMLLASQALRITVKLVCSIDMMSRKRDEASATLETDRGSTRKDNINPEDNRHSQTFLPGDAVSSLR-VGGGDRT--VTEATVILTSSCTQASAGELDNLVEVTKATTCCTGCQFAAVSKKDRSTPPFPLVRAAPPLFQAWYQVPRRACCWVCARDDARMQLIFFAADPCDPPIPGAGREAEQAAHKASLGVQPGWEAAAAATRAAEEAAIARRQARKIKAVENRQLELAELANARQ 309          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10000.61.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K454_9PHAE1.760e-5045.24SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJS4_9PHAE1.360e-3934.75SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JP78_9PHAE1.670e-3738.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 407..481
NoneNo IPR availableGENE3D3.90.70.80coord: 118..276
e-value: 1.5E-6
score: 29.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10000contigS-firma_F_contig10000:457..2821 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10000.61.1mRNA_S-firma_F_contig10000.61.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10000 314..2821 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10000.61.1 ID=prot_S-firma_F_contig10000.61.1|Name=mRNA_S-firma_F_contig10000.61.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=500bp
MTTGHTAAPAPAPAPAPAPTPAPKDLPPLPRRSVISEHEARLRLNNVAEL
CRKVLRTGKKASGVDGASAQPEQKTPLAVATDFITTNCTWRHVFDTPVGV
LPLPLGREAEDARPYDYNATMIIPKTMRTEWVAKFVSGDGNCAWRALAYA
MWGTDEYWVQLKLVILAWCVANTELLLAEGRALYDDTKFYPERIHREYGG
FKEGDDVSTSDHRFKMLIASVEYYTSDTVWGSDLTMLMASQALRITVKIL
HPMDKKSRDVYDAEGRQPVHGTGRKVDKCEDYRHSQVFLPDDAALIYRGV
GTGESTRLIEEAAVALTGGMTRASANELADIPEINRDSICRAGCHFAAVL
STDGRNVPFPVFKVAPPLTRELDGRLSKECDEERAAYNRRRGIQPGSDEA
RAVAAAAVVAAAKRRQARKELSRANRQLALEERMRARQAEKDKEKEEEED
KKRKQKEAEEKMAARDELARAMQKKDEEETKNKKDEGGDAGEGRSGKGKV
back to top