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Homology
BLAST of mRNA_S-firma_F_contig10000.61.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE) HSP 1 Score: 196 bits (498), Expect = 5.060e-50 Identity = 114/252 (45.24%), Postives = 145/252 (57.54%), Query Frame = 3 Query: 522 MRTE-WVAKFVSGDGNCAWRALAYAMWGTDEYWVQLKLVILAWCVANTELLLAEGRALYDDTKFYPERIHREYGGFKEGDDVSTSD---HRFKMLIASVEYYTSDTVWGSDLTMLMASQALRITVKILHPMDKKSRDVYDAEGRQP--VHGTGRKVDKCEDYRHSQVFLPDDAALIYRGVGTGESTRLIEEAAVALTGGMTRASANELADIPEINRDSICRAGCHFAAVLSTDGRNVPFPVFKVAPPLTREL 1259
MR E WVA +V GDGNC WR+LA +W +DEYW QLKLV+LAW A+ E L++EGR L D + + + IH G V + +ML+ASV Y DTVWG D T+L+ASQAL+ITVK+L P D R D P + G GRK DK +D R SQ FL DDA G G R++ EA V LT +AS EL ++ E+ + + C G HFAAV D PFP+ + APPL + L
Sbjct: 1 MRKEGWVALWVRGDGNCCWRSLAKCLWESDEYWSQLKLVVLAWAAAHAEELVSEGRVLSDFSLHFSDDIHAGLGYAYSATCVGAAPSVAQTSRMLLASVAYDCEDTVWGGDFTLLLASQALKITVKLLSPNDVMVRK-RDESSATPGTIRGAGRKGDKVDDTRLSQTFLADDAVSCLHIQGGG---RMVAEATVVLTSCTGQASVGELDNLVEVTKSTACPRGVHFAAVSKKDRSTPPFPLVRAAPPLFQAL 248
BLAST of mRNA_S-firma_F_contig10000.61.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE) HSP 1 Score: 164 bits (414), Expect = 3.210e-39 Identity = 106/305 (34.75%), Postives = 155/305 (50.82%), Query Frame = 3 Query: 393 ITTNCTWRHVFDTPVGVLPLPLGREAEDARPYDYNATMIIPKTMRTEWVAKFVSGDGNCAWRALAYAMWGTDEYWVQLKLVILAWCVANTELLLAEGRALYDDTKF--YPERIHREYGGFKEGDDVSTSDHRF----KMLIASVEYYTSDTVWGSDLTMLMASQALRITVKILHPMDKKSR---DVYDAEGRQPVHGTGRKVDKCEDYRHSQVFLPDDAA--LIYRGVGTGESTRLIEEAAVALTGGMTRASAN-ELADIPEINRDSICRAGCHFAAVLSTDGR---NVPFPVFKVAPPLTRELD 1262
I CTW VF TP GV+P + R + YD ATMI+ +R +VA +V GDGNC WR++A A+WGTDEYW QLKL +LAW N E L+ EG AL+ Y + IH ++ G D DHR ML+ S+ ++++ WG L ++ ++ + +K+ HP D ++R D A + G D+ D+R+S +P +I RGV E ++EE A+ + + + L+DIP I D+ HFAA++ D PFP+ K PPL + D
Sbjct: 56 IAAECTWPKVFGTPEGVVPT-VARPGKGQEMYDPKATMILTPELRKTFVALWVEGDGNCFWRSMAKALWGTDEYWRQLKLAVLAWSAVNVEALVGEGGALFGRAGIIHYDDEIHAKH--IYRGPDGKV-DHRLDDDASMLLESIAKFSANRQWGGCLAGVLFTERTGLVLKMPHPFDMRARIRADTSGAAAKATASYGGGSEDEFGDHRYSFTKVPTAGRKEIILRGVSDEEDI-VVEEIAITMASYDSAVVGDGSLSDIPVIEADTNLNHLNHFAAIVCADPDVHVRRPFPMSKAGPPLHAKFD 355
BLAST of mRNA_S-firma_F_contig10000.61.1 vs. uniprot
Match: A0A6H5JP78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP78_9PHAE) HSP 1 Score: 155 bits (391), Expect = 3.560e-37 Identity = 118/304 (38.82%), Postives = 152/304 (50.00%), Query Frame = 3 Query: 645 WCVANTELLLAEGRALYDDTKFYPERIHREYGGFKEG-DDVSTSDHRFKMLIASVEYYTSDTVWGSDLTMLMASQALRITVKILHPMDKKSRDVYDAEGR-QPVHGTGRKVD-KCEDYRHSQVFLPDDAALIYRGVGTGESTRLIEEAAVALTGGMTRASANELADIPEINRDSICRAGCHFAAVLSTDGRNVPFPVFKVAPPLTREL---------------DGRL------SKECDE---------ERAAYNRRRGIQPGSDEARAVAAXXXXXXXXXRQARKELSRANRQLALEERMRARQ 1457
W AN E L++ GR L D TK Y IH + DD +T ++ KMLIASV ++ WG DLTML+ASQALRITVK++ +D SR +A + G+ RK + ED RHSQ FLP DA R VG G+ T + EA V LT T+ASA EL ++ E+ + + C GC FAAV D PFP+ + APPL + D R+ + CD E+AA+ G+QPG + A A RQARK + NRQL L E ARQ
Sbjct: 9 WPAANAEDLVSRGRILSDFTKNYSSDIHGAFAVTANRLDDAATVANKSKMLIASVADFSKPACWGGDLTMLLASQALRITVKLVCSIDMMSRKRDEASATLETDRGSTRKDNINPEDNRHSQTFLPGDAVSSLR-VGGGDRT--VTEATVILTSSCTQASAGELDNLVEVTKATTCCTGCQFAAVSKKDRSTPPFPLVRAAPPLFQAWYQVPRRACCWVCARDDARMQLIFFAADPCDPPIPGAGREAEQAAHKASLGVQPGWEAAAAATRAAEEAAIARRQARKIKAVENRQLELAELANARQ 309
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1645 |
| Cds size | 1500 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815523.5330007-UTR-S-firma_F_contig10000:313..456 | 1622815523.5330007-UTR-S-firma_F_contig10000:313..456 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig10000 314..456 + |
| 1696949386.4000645-UTR-S-firma_F_contig10000:313..456 | 1696949386.4000645-UTR-S-firma_F_contig10000:313..456 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig10000 314..456 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815523.5430999-CDS-S-firma_F_contig10000:456..554 | 1622815523.5430999-CDS-S-firma_F_contig10000:456..554 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10000 457..554 + |
| 1696949386.4596508-CDS-S-firma_F_contig10000:456..554 | 1696949386.4596508-CDS-S-firma_F_contig10000:456..554 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10000 457..554 + |
| 1622815523.5538478-CDS-S-firma_F_contig10000:960..1192 | 1622815523.5538478-CDS-S-firma_F_contig10000:960..1192 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10000 961..1192 + |
| 1696949386.4801824-CDS-S-firma_F_contig10000:960..1192 | 1696949386.4801824-CDS-S-firma_F_contig10000:960..1192 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10000 961..1192 + |
| 1622815524.0187228-CDS-S-firma_F_contig10000:1380..2166 | 1622815524.0187228-CDS-S-firma_F_contig10000:1380..2166 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10000 1381..2166 + |
| 1696949386.5179396-CDS-S-firma_F_contig10000:1380..2166 | 1696949386.5179396-CDS-S-firma_F_contig10000:1380..2166 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10000 1381..2166 + |
| 1622815524.033156-CDS-S-firma_F_contig10000:2437..2821 | 1622815524.033156-CDS-S-firma_F_contig10000:2437..2821 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10000 2438..2821 + |
| 1696949386.550849-CDS-S-firma_F_contig10000:2437..2821 | 1696949386.550849-CDS-S-firma_F_contig10000:2437..2821 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10000 2438..2821 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10000.61.1 >prot_S-firma_F_contig10000.61.1 ID=prot_S-firma_F_contig10000.61.1|Name=mRNA_S-firma_F_contig10000.61.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=500bp
MTTGHTAAPAPAPAPAPAPTPAPKDLPPLPRRSVISEHEARLRLNNVAEL
CRKVLRTGKKASGVDGASAQPEQKTPLAVATDFITTNCTWRHVFDTPVGV
LPLPLGREAEDARPYDYNATMIIPKTMRTEWVAKFVSGDGNCAWRALAYA
MWGTDEYWVQLKLVILAWCVANTELLLAEGRALYDDTKFYPERIHREYGG
FKEGDDVSTSDHRFKMLIASVEYYTSDTVWGSDLTMLMASQALRITVKIL
HPMDKKSRDVYDAEGRQPVHGTGRKVDKCEDYRHSQVFLPDDAALIYRGV
GTGESTRLIEEAAVALTGGMTRASANELADIPEINRDSICRAGCHFAAVL
STDGRNVPFPVFKVAPPLTRELDGRLSKECDEERAAYNRRRGIQPGSDEA
RAVAAAAVVAAAKRRQARKELSRANRQLALEERMRARQAEKDKEKEEEED
KKRKQKEAEEKMAARDELARAMQKKDEEETKNKKDEGGDAGEGRSGKGKV back to topmRNA from alignment at S-firma_F_contig10000:314..2821+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_F_contig10000.61.1 ID=mRNA_S-firma_F_contig10000.61.1|Name=mRNA_S-firma_F_contig10000.61.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2508bp|location=Sequence derived from alignment at S-firma_F_contig10000:314..2821+ (Sphaerotrichia firma ET2_F female)
GACGGGTGCACTGAGAGCACTACAGCCACCTGATCGTCGCAATAAACAAG
GAAGCACAAGAGGCAGCCTTCTGTGCCTACAGAAGCCTACAGAAGCCAAG
TTTCGCCCCCCGAGACCCTAAACGAGGCGAGATCGGCCCGACGATGACAA
CAGGACATACAGCAGCACCGGCACCCGCACCGGCACCGGCACCGGCACCA
ACACCGGCACCCAAGGATCTACCGCCTCTACCAAGGAGAAGGTGGCTTTG
GTGTTCCCCCCTGTCGCGTGGTTGTGTTGGAGGGCTTGTGTTGGAGCCTT
TGTTGTTGCAAAAAACAATTTGTAAAAAAAAGACACAGAAGAAACGAATC
AAATTTCAAATTTCCCGCGCACCCAAGCTTGCCATACCGCTCATGTACGA
AAACAAAAGAAATGAACCGATACATTCCCACAACTTTCCCTCCCTAATGT
GAGGTACTACTAATCCGGGCACAGCGAATCCCCACTTTTTGTCACCATTG
ACTCGCATGTTGTTCTCCGGACGGTTTCGCGCCGTTAGAGGTCGGGGGGG
GGTTGGACCCACCATGCCCGACCATGACTGATTGTGCGAAACGAAATTCC
CGCGCGCTCTCGTTGCCGCCGCTGCCGTATTTTTGTCATCTCCCTAGTGT
CATCTCGGAACACGAGGCGCGTTTACGGCTGAACAATGTCGCCGAGCTTT
GCAGGAAAGTCTTGCGCACGGGAAAGAAGGCGTCGGGGGTAGACGGGGCA
TCGGCACAGCCTGAGCAGAAGACCCCGTTGGCCGTGGCGACAGACTTTAT
CACCACGAACTGCACGTGGAGACATGTGTTCGATACGCCTGTTGGAGTCC
TGCCGCTGCCACTGGGTAGAGAGGCAGAGGTGCGCCCATTGTCTATATGC
TTTAACGAGGTGTGTGTAACGATGTCGGTCGGAGCTTCGACGCCAATGTC
TGGGCGTATCGACGACAAATGTGCGATGGGCTAGATGTTGTTCGTTTGAT
GCATCGGCCTCATTGATGTTTCCGTCAACCGTTTGCGTTGTACTGTACAC
CCGATGGCCGTCGATAGGACGCAAGACCCTACGACTACAACGCCACCATG
ATTATCCCGAAGACCATGCGCACGGAGTGGGTAGCCAAGTTCGTATCCGG
CGATGGCAACTGCGCTTGGCGTGCCTTGGCGTATGCCATGTGGGGTACCG
ACGAGTACTGGGTCCAACTTAAGCTCGTGATACTTGCGTGGTGTGTAGCA
AACACGGAGTTGCTTTTAGCGGAGGGTCGCGCCTTGTATGATGACACCAA
GTTCTATCCGGAGAGAATCCACCGCGAGTACGGTGGGTTCAAGGAAGGGG
ACGATGTGTCGACGAGCGACCATCGCTTCAAAATGCTCATTGCGTCCGTC
GAGTACTACACCTCCGATACGGTCTGGGGTAGTGATCTTACGATGCTGAT
GGCATCGCAGGCACTACGGATAACGGTGAAGATTTTGCACCCCATGGACA
AGAAGTCGCGGGACGTGTACGATGCGGAGGGTAGACAGCCGGTGCACGGT
ACGGGGAGGAAGGTAGACAAATGCGAAGACTACCGTCATTCCCAAGTGTT
TCTACCCGACGATGCAGCGCTTATTTACCGTGGAGTTGGAACAGGTGAAA
GCACGCGCCTCATCGAGGAGGCAGCCGTAGCTTTGACGGGCGGCATGACG
CGTGCTAGTGCGAATGAGCTCGCTGACATCCCCGAGATCAACAGAGATTC
AATCTGTCGTGCGGGGTGCCACTTCGCGGCAGTGTTGAGCACGGACGGGA
GGAATGTCCCCTTTCCGGTTTTCAAGGTGGCACCTCCGTTGACGCGGGAG
CTGGTGAGTTTCGCGTCGCAGGTTCCGAGCCCTCCGGTACTCGATGTGTG
TGTGTGTTTTCGCGTCATCTAACCTTGCGTTGGTCACCTCTCGGCGGGGA
TCGAAATCAAAGCTTGCTGCTAGATGGTTGACGAGGTCATCACATACCAC
CGGCGCGATCGGTACGGCAAAAAGAAATTTGAAAAATATTATTCCCCGAT
GCACCTTGTTCCGATGCGCCTGGTTGATGCTGTTCCAACCCTGATATCAT
GCTCTGATGTCCTTGTCTTTGCAGGATGGGCGCTTGAGCAAAGAATGCGA
CGAGGAGAGGGCCGCGTACAACCGACGGAGAGGGATCCAGCCTGGCTCAG
ACGAAGCGAGGGCGGTAGCGGCGGCGGCCGTGGTAGCTGCGGCAAAAAGG
CGGCAGGCAAGGAAGGAGTTGTCTCGTGCGAACCGGCAGCTGGCGCTGGA
GGAGCGGATGAGAGCACGGCAGGCGGAGAAAGACAAGGAGAAGGAGGAGG
AGGAAGATAAAAAGCGCAAACAGAAGGAGGCCGAGGAGAAGATGGCGGCG
CGGGACGAATTGGCGCGCGCAATGCAGAAGAAGGACGAGGAGGAGACAAA
AAACAAAAAAGACGAGGGGGGGGATGCTGGGGAGGGGAGGAGTGGAAAAG
GAAAGGTA back to topCoding sequence (CDS) from alignment at S-firma_F_contig10000:314..2821+ >mRNA_S-firma_F_contig10000.61.1 ID=mRNA_S-firma_F_contig10000.61.1|Name=mRNA_S-firma_F_contig10000.61.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3000bp|location=Sequence derived from alignment at S-firma_F_contig10000:314..2821+ (Sphaerotrichia firma ET2_F female)
ATGACAACAGGACATACAGCAGCACCGGCACCCGCACCGGCACCGGCACC
GGCACCAACACCGGCACCCAAGGATCTACCGCCTCTACCAAGGAGAAGAT
GACAACAGGACATACAGCAGCACCGGCACCCGCACCGGCACCGGCACCGG
CACCAACACCGGCACCCAAGGATCTACCGCCTCTACCAAGGAGAAGTGTC
ATCTCGGAACACGAGGCGCGTTTACGGCTGAACAATGTCGCCGAGCTTTG
CAGGAAAGTCTTGCGCACGGGAAAGAAGGCGTCGGGGGTAGACGGGGCAT
CGGCACAGCCTGAGCAGAAGACCCCGTTGGCCGTGGCGACAGACTTTATC
ACCACGAACTGCACGTGGAGACATGTGTTCGATACGCCTGTTGGAGTCCT
GCCGCTGCCACTGGGTAGAGAGGCAGAGTGTCATCTCGGAACACGAGGCG
CGTTTACGGCTGAACAATGTCGCCGAGCTTTGCAGGAAAGTCTTGCGCAC
GGGAAAGAAGGCGTCGGGGGTAGACGGGGCATCGGCACAGCCTGAGCAGA
AGACCCCGTTGGCCGTGGCGACAGACTTTATCACCACGAACTGCACGTGG
AGACATGTGTTCGATACGCCTGTTGGAGTCCTGCCGCTGCCACTGGGTAG
AGAGGCAGAGGACGCAAGACCCTACGACTACAACGCCACCATGATTATCC
CGAAGACCATGCGCACGGAGTGGGTAGCCAAGTTCGTATCCGGCGATGGC
AACTGCGCTTGGCGTGCCTTGGCGTATGCCATGTGGGGTACCGACGAGTA
CTGGGTCCAACTTAAGCTCGTGATACTTGCGTGGTGTGTAGCAAACACGG
AGTTGCTTTTAGCGGAGGGTCGCGCCTTGTATGATGACACCAAGTTCTAT
CCGGAGAGAATCCACCGCGAGTACGGTGGGTTCAAGGAAGGGGACGATGT
GTCGACGAGCGACCATCGCTTCAAAATGCTCATTGCGTCCGTCGAGTACT
ACACCTCCGATACGGTCTGGGGTAGTGATCTTACGATGCTGATGGCATCG
CAGGCACTACGGATAACGGTGAAGATTTTGCACCCCATGGACAAGAAGTC
GCGGGACGTGTACGATGCGGAGGGTAGACAGCCGGTGCACGGTACGGGGA
GGAAGGTAGACAAATGCGAAGACTACCGTCATTCCCAAGTGTTTCTACCC
GACGATGCAGCGCTTATTTACCGTGGAGTTGGAACAGGTGAAAGCACGCG
CCTCATCGAGGAGGCAGCCGTAGCTTTGACGGGCGGCATGACGCGTGCTA
GTGCGAATGAGCTCGCTGACATCCCCGAGATCAACAGAGATTCAATCTGT
CGTGCGGGGTGCCACTTCGCGGCAGTGTTGAGCACGGACGGGAGGAATGT
CCCCTTTCCGGTTTTCAAGGTGGCACCTCCGTTGACGCGGGAGCTGGACG
CAAGACCCTACGACTACAACGCCACCATGATTATCCCGAAGACCATGCGC
ACGGAGTGGGTAGCCAAGTTCGTATCCGGCGATGGCAACTGCGCTTGGCG
TGCCTTGGCGTATGCCATGTGGGGTACCGACGAGTACTGGGTCCAACTTA
AGCTCGTGATACTTGCGTGGTGTGTAGCAAACACGGAGTTGCTTTTAGCG
GAGGGTCGCGCCTTGTATGATGACACCAAGTTCTATCCGGAGAGAATCCA
CCGCGAGTACGGTGGGTTCAAGGAAGGGGACGATGTGTCGACGAGCGACC
ATCGCTTCAAAATGCTCATTGCGTCCGTCGAGTACTACACCTCCGATACG
GTCTGGGGTAGTGATCTTACGATGCTGATGGCATCGCAGGCACTACGGAT
AACGGTGAAGATTTTGCACCCCATGGACAAGAAGTCGCGGGACGTGTACG
ATGCGGAGGGTAGACAGCCGGTGCACGGTACGGGGAGGAAGGTAGACAAA
TGCGAAGACTACCGTCATTCCCAAGTGTTTCTACCCGACGATGCAGCGCT
TATTTACCGTGGAGTTGGAACAGGTGAAAGCACGCGCCTCATCGAGGAGG
CAGCCGTAGCTTTGACGGGCGGCATGACGCGTGCTAGTGCGAATGAGCTC
GCTGACATCCCCGAGATCAACAGAGATTCAATCTGTCGTGCGGGGTGCCA
CTTCGCGGCAGTGTTGAGCACGGACGGGAGGAATGTCCCCTTTCCGGTTT
TCAAGGTGGCACCTCCGTTGACGCGGGAGCTGGATGGGCGCTTGAGCAAA
GAATGCGACGAGGAGAGGGCCGCGTACAACCGACGGAGAGGGATCCAGCC
TGGCTCAGACGAAGCGAGGGCGGTAGCGGCGGCGGCCGTGGTAGCTGCGG
CAAAAAGGCGGCAGGCAAGGAAGGAGTTGTCTCGTGCGAACCGGCAGCTG
GCGCTGGAGGAGCGGATGAGAGCACGGCAGGCGGAGAAAGACAAGGAGAA
GGAGGAGGAGGAAGATAAAAAGCGCAAACAGAAGGAGGCCGAGGAGAAGA
TGGCGGCGCGGGACGAATTGGCGCGCGCAATGCAGAAGAAGGACGAGGAG
GAGACAAAAAACAAAAAAGACGAGGGGGGGGATGCTGGGGAGGGGAGGAG
TGGAAAAGGAAAGGTAGATGGGCGCTTGAGCAAAGAATGCGACGAGGAGA
GGGCCGCGTACAACCGACGGAGAGGGATCCAGCCTGGCTCAGACGAAGCG
AGGGCGGTAGCGGCGGCGGCCGTGGTAGCTGCGGCAAAAAGGCGGCAGGC
AAGGAAGGAGTTGTCTCGTGCGAACCGGCAGCTGGCGCTGGAGGAGCGGA
TGAGAGCACGGCAGGCGGAGAAAGACAAGGAGAAGGAGGAGGAGGAAGAT
AAAAAGCGCAAACAGAAGGAGGCCGAGGAGAAGATGGCGGCGCGGGACGA
ATTGGCGCGCGCAATGCAGAAGAAGGACGAGGAGGAGACAAAAAACAAAA
AAGACGAGGGGGGGGATGCTGGGGAGGGGAGGAGTGGAAAAGGAAAGGTA back to top
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