prot_S-firma_F_contig10402.586.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10402.586.1
Unique Nameprot_S-firma_F_contig10402.586.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length393
Homology
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BLAST of mRNA_S-firma_F_contig10402.586.1 vs. uniprot
Match: D8LTS0_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTS0_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.560e-9
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 0 
Query:  345 QASAMAELLVAVREEEDGLLKLTGASYVFNRALRVLADFYRTDGP 389
            +ASAM ELLVA+REEE+GLLKLTGA YV+N+ALR+LAD +RT GP
Sbjct:  677 KASAMLELLVAIREEEEGLLKLTGAHYVYNKALRLLADSFRTAGP 721
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10402.586.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTS0_ECTSI1.560e-975.56PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 11..44
e-value: 0.0018
score: 16.3
coord: 47..79
e-value: 1.4E-5
score: 22.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 9.416
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 79..113
score: 10.106
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 44..78
score: 11.159
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 17..138
e-value: 4.5E-9
score: 36.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..165
e-value: 4.3E-34
score: 120.3
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 3..184
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..392
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10402contigS-firma_F_contig10402:584..3780 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10402.586.1mRNA_S-firma_F_contig10402.586.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10402 485..4441 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10402.586.1 ID=prot_S-firma_F_contig10402.586.1|Name=mRNA_S-firma_F_contig10402.586.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=393bp
MRKAGLLPTTVSFSTAVKSCERAGRADEVLSLLGRMKSGGVRRNLTTFHS
ALHACAKDGRREEAFRLLSEMKQEGVAADEKTFRLAIQACGRAGDTAGAL
AILRGMAKAGVPPGEHSLASTMEAFSLKGDVDAVLSLVKEARGGAATENP
GNGGGQGKPFWSCIVVAAKACAAAGRPAAAVGLLRELPPDDDADRTCPPT
AVADVAPAAAAAAAAAAAVLRVENTDRHLHGQHQGQGQQRQQQWQQRQQQ
HQRAPREKLAGQSQRPPGRDARPASSPASASASSLDPKQANTPPPPPRRR
RRRGQHEAEEGGEDLTSSSSAFFTTVGRRELAWSQVLWAAAGAGQASAMA
ELLVAVREEEDGLLKLTGASYVFNRALRVLADFYRTDGPLRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat