mRNA_S-firma_F_contig10402.586.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10402.586.1
Unique NamemRNA_S-firma_F_contig10402.586.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10402.586.1 vs. uniprot
Match: D8LTS0_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTS0_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.160e-8
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 1 
Query: 1132 QASAMAELLVAVREEEDGLLKLTGASYVFNRALRVLADFYRTDGP 1266
            +ASAM ELLVA+REEE+GLLKLTGA YV+N+ALR+LAD +RT GP
Sbjct:  677 KASAMLELLVAIREEEEGLLKLTGAHYVYNKALRLLADSFRTAGP 721
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10402.586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTS0_ECTSI1.160e-875.56PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10402contigS-firma_F_contig10402:485..4441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LTS0
Max annot lvl2880.D8LTS0|-
Evalue2.57e-10
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-28_003050.2
Descriptionendonuclease activity
COG categoryS
Hectar predicted targeting categoryother localisation
Exons5
Model size1939
Cds size1179
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.153919-UTR-S-firma_F_contig10402:484..5831622815574.153919-UTR-S-firma_F_contig10402:484..583Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10402 485..583 +
1696949427.290884-UTR-S-firma_F_contig10402:484..5831696949427.290884-UTR-S-firma_F_contig10402:484..583Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10402 485..583 +
1622815574.2456305-UTR-S-firma_F_contig10402:3780..44411622815574.2456305-UTR-S-firma_F_contig10402:3780..4441Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10402 3781..4441 +
1696949427.3710272-UTR-S-firma_F_contig10402:3780..44411696949427.3710272-UTR-S-firma_F_contig10402:3780..4441Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10402 3781..4441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.1678634-CDS-S-firma_F_contig10402:583..6671622815574.1678634-CDS-S-firma_F_contig10402:583..667Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10402 584..667 +
1696949427.3049996-CDS-S-firma_F_contig10402:583..6671696949427.3049996-CDS-S-firma_F_contig10402:583..667Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10402 584..667 +
1622815574.1846545-CDS-S-firma_F_contig10402:921..10081622815574.1846545-CDS-S-firma_F_contig10402:921..1008Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10402 922..1008 +
1696949427.3230546-CDS-S-firma_F_contig10402:921..10081696949427.3230546-CDS-S-firma_F_contig10402:921..1008Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10402 922..1008 +
1622815574.1980917-CDS-S-firma_F_contig10402:1480..15811622815574.1980917-CDS-S-firma_F_contig10402:1480..1581Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10402 1481..1581 +
1696949427.3370807-CDS-S-firma_F_contig10402:1480..15811696949427.3370807-CDS-S-firma_F_contig10402:1480..1581Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10402 1481..1581 +
1622815574.2146435-CDS-S-firma_F_contig10402:2172..23171622815574.2146435-CDS-S-firma_F_contig10402:2172..2317Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10402 2173..2317 +
1696949427.353274-CDS-S-firma_F_contig10402:2172..23171696949427.353274-CDS-S-firma_F_contig10402:2172..2317Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10402 2173..2317 +
1622815574.228885-CDS-S-firma_F_contig10402:3018..37801622815574.228885-CDS-S-firma_F_contig10402:3018..3780Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10402 3019..3780 +
1696949427.362541-CDS-S-firma_F_contig10402:3018..37801696949427.362541-CDS-S-firma_F_contig10402:3018..3780Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10402 3019..3780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10402.586.1prot_S-firma_F_contig10402.586.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10402 584..3780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10402.586.1

>prot_S-firma_F_contig10402.586.1 ID=prot_S-firma_F_contig10402.586.1|Name=mRNA_S-firma_F_contig10402.586.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=393bp
MRKAGLLPTTVSFSTAVKSCERAGRADEVLSLLGRMKSGGVRRNLTTFHS
ALHACAKDGRREEAFRLLSEMKQEGVAADEKTFRLAIQACGRAGDTAGAL
AILRGMAKAGVPPGEHSLASTMEAFSLKGDVDAVLSLVKEARGGAATENP
GNGGGQGKPFWSCIVVAAKACAAAGRPAAAVGLLRELPPDDDADRTCPPT
AVADVAPAAAAAAAAAAAVLRVENTDRHLHGQHQGQGQQRQQQWQQRQQQ
HQRAPREKLAGQSQRPPGRDARPASSPASASASSLDPKQANTPPPPPRRR
RRRGQHEAEEGGEDLTSSSSAFFTTVGRRELAWSQVLWAAAGAGQASAMA
ELLVAVREEEDGLLKLTGASYVFNRALRVLADFYRTDGPLRG*
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mRNA from alignment at S-firma_F_contig10402:485..4441+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10402.586.1 ID=mRNA_S-firma_F_contig10402.586.1|Name=mRNA_S-firma_F_contig10402.586.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3957bp|location=Sequence derived from alignment at S-firma_F_contig10402:485..4441+ (Sphaerotrichia firma ET2_F female)
TGGAACAGGCACCAGCCTGATCTGCTCAGCTTTAACCTAGCCCTGGCGGC
GTGCGCGCGGAAGGGCGAGGCCACCAAGACGCTCCGCCTGCTGGGGGACA
TGCGGAAGGCGGGCCTGCTGCCCACCACCGTCAGCTTCAGCACGGCGGTG
AAGTCCTGCGAGAGGGCCGGCAGAGCGGACGAGGTGAGGGTGGGGGCTCT
GCCCGCCGTTTGTTTGCTTTTTGTTGTTGTGGCTGTTGCTTTTTTTTTTG
TTCTGGGCAAGCAGGCGTTGTCCCTGTTGTTGAGCTTCGCTGTGTCTGGC
GGTGATGCTGCTGCTGTGCTGCTGCTGCTGCCGCTGCGGGTTGTTTTGTG
TGTACGCGTTCCCTGTTGCTTAGCTTCCGCTGCGTCTGCTGCCGCCGCCG
CCGCCGTTGTTGTTGTTGTTGTTGATGATTCGGGCAGGTGTTGTCCCTGT
TAGGCAGGATGAAGTCGGGGGGCGTGCGGCGCAACCTGACGACGTTCCAC
TCCGCGCTCCACGCTTGTGCCAAGGTGGGTGAACCAGCTAGCTGTCTAGC
TATCTAGTGTTGGGTGCTGCCCTCGGGCGTTTCGTTTTTTTTCGTTTGTT
CTGTCGCGTGCACGTGCACTCCCGCCGCCCCGCTGAGCCATGTTTTTTTG
GACCCCCCGAGTATCCCGGGCCGGACGCGGCATCGATCAAGCCAACGTGA
GCATTCTGCTCTATGAGATCGCGCAGCAGTCTCAGCACAGGGTTTCGTAG
GTCGCTCTCGCCAGAGTAGAGCGTGTCGTGTTCCTACGCCGCCTCGGGAC
ATGGCACAATGCATGCACCGCGCGTTGCCGGCCTAAATTACGGTACCGAT
TCCACAGCACGCACAGACAGCACTGACCGAAACCTGCTCGTGAAAGGCCA
ACCCTCTCCCTCCCCCTCCCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTACTATTATTTTTTTTCCGGGGGGGGGGGGGGGCAGGACG
GCAGAAGAGAGGAGGCGTTTCGCCTGTTGTCGGAGATGAAGCAGGAAGGG
GTCGCCGCGGACGAGAAGACGTTCCGGCTGGCCATCCAGGCGTGCGGGTG
AGCGTTCGCTGTCGAGACGCGAGACGCGCGGCAGGAGATGGCAAGGCGGA
GGAGGCGTACAGAGCAAGGAGACACCCCTGTTATAGATTTAAAGCTTTGG
GTTCGCGCTCTTGGTCAGCATGCCCTCCGCACTACACACACAGTGCGGGA
CGCACGTCGTACAGCAACGCCCCCCCCCCCAACACACACGCACGCGAATT
CAGCGTATACTTCTATATCGGGGCCGTGATAAGACACAAGATAGCCAAGA
GTTGAGGCTAGCGTGGAAGACGGAGCAGCAGGCTGCAGCTGATAACGCCA
AGAGGGCACCGCCAACACGTGGCTGATTAAAAGCAGCAGCATTGCGCGTG
AAGCATTGGTGCGCGTTCACCCGCCCCGTTTCCCCTCAGCATCGCATGCT
CCGATTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGAGTTTCT
CATTTAGCATCGCCCGCGACCGGTTGACCACTGAAAAAACGCCAGCCTCC
AGCGGTGTGTGTGTCTGTGTGTGTGTGTTTTTTTTTTAAATCTCATGGTA
GCTGGTTCTTGTGTCGTGCACACGTACGCCGATCCCAGGCGCGCGGGCGA
CACGGCGGGGGCCCTCGCGATCCTCCGAGGCATGGCGAAGGCAGGGGTGC
CTCCCGGGGAGCACTCGCTCGCGTCCACCATGGAGGCGTTCTCCCTGAAG
GGCGACGTCGATGCGGTGCTCTCCCTTGTCAAGGTGGGAAGGAAGGAAGG
CGTAGTGGCCGCAGATGTGCCGTGAGTTTAAGCGCGGGGGGGGGAGGTGT
TTTTTTTTGCCTGCCCGATACGTGTCTCTCGGCAAAGGGGGGGGGGCGCC
AGTGGCGGCGCGTTTTTGTTGCGGTTGCGGTCTCTCGTTTTTTCCGTGCG
CGCGTGTGTGTGTGTGTGTGTGTGTTTTGGGGGCTCCGTGTGTGTGTTTT
GGGGGCCCCGACAAGGTGTATGTGTGTGTGTTTTTTTTTTGTTTTTGGGG
ACCCCGGAAAGGTCTCGCTTGTTTTGTTGCGGTTGGGTTTCGGCCTTGCC
ACACTGCACTGCCGTTTGATTGGCCGAGGACGCTGCGGACGGCTGCGGTG
GTGGGACCGCGGATGTCTCATTCTCTGCGTTGGGGGCGTGGTGTGGGATC
TGAGGGCGGCAATCCCCCCCTTCCCCCACCAACCCTGATGACCCCACTTA
AAAAGAACGAGTTGGGAGACAACAGCCGCAGCGCAAATAGAGATGTATGA
CGAGCTAACGACGGCACCGCGCACAGCGAGCGGTAGTCGCGATGTGCAGC
CTGCACTCATGGCGCTCTTTGACCAGCGCACCTCGACAAACCACGCTCCC
CACTCGCCGAACGTCAACGCCTCACCAAACCAACCCACCGGTACTCAACT
CGACCCCGTGCGCACGAAACGACGACCGAAACAGGAAGCACGGGGGGGGG
CGGCGACCGAGAACCCCGGAAACGGCGGGGGGCAGGGCAAGCCGTTCTGG
TCCTGCATCGTGGTGGCCGCCAAGGCTTGCGCCGCCGCAGGCCGGCCCGC
CGCCGCCGTCGGCCTGCTGCGGGAGCTCCCCCCGGACGACGACGCCGATC
GCACGTGCCCCCCTACTGCCGTCGCCGACGTTGCGCCTGCGGCCGCCGCC
GCCGCCGCCGCCGCCGCCGCGGTGCTACGAGTCGAGAACACAGACCGCCA
CCTTCACGGCCAGCATCAGGGGCAGGGGCAGCAGCGGCAGCAGCAGTGGC
AGCAGCGGCAGCAGCAGCATCAGCGGGCACCGAGGGAAAAGTTGGCGGGC
CAGAGTCAACGGCCTCCGGGGCGCGATGCGAGACCCGCGAGCAGCCCCGC
CTCCGCGTCTGCGTCGAGCCTCGACCCGAAGCAGGCGAACACGCCGCCGC
CGCCGCCGCGGCGGCGGCGGCGGCGGGGCCAACACGAGGCGGAGGAGGGG
GGCGAGGACCTCACCAGCAGCAGCTCCGCGTTCTTCACGACGGTGGGGAG
GCGGGAGCTCGCCTGGAGCCAGGTGCTGTGGGCGGCGGCCGGGGCGGGCC
AGGCGTCGGCGATGGCGGAGCTTCTGGTGGCCGTGCGCGAGGAGGAGGAC
GGTCTCTTGAAGCTCACGGGCGCGTCCTATGTGTTCAACCGGGCGTTGAG
GGTGTTGGCGGATTTTTATCGTACGGACGGCCCGCTCCGCGGCTGAGATC
TCCCCCCCCCCCCCCTCCATTCCCTATCGGAATTATGCGGCTGAGCCCCG
TCGTCGGAGTTCTCGGAAGTCTTTGTGCGCCATGGGGGGGTGTCGAAGCA
GGTGCTCCGCCGGATCGCCCGCTGAGGAGGTGTTTTCGCGGAGGTTGCTT
GACCGTTACGATCGATTCCTTTGTATGGTCGGCCTTGGTAGACTCCGTTC
ATGTGTCGGTCAGCAGTGCTGCGAAAGTTATGTTTCGTTGGTTTTGGGAG
AGTTGAGGCTTGTTGCGGTCGGTTGTTTTGGGCCAGAACAACAGCGTGTA
CGTATGTATGCAGTGTTTTGTTGTTTGTGTGCTGCTGTTGTTCGGCAAGT
GTAAATATGATTAGACGCCGTCTGTGGGTTTCCGCTCGGATCCCTCGTCT
CTGTAGAAGCCTAACTGCCTGAGAGTTCTCAAGGGATTTTCACCCCATGT
TTCTTGCACGGGAGCCGCTGCTTCCGAGGGGTATTGATTGCTTCTCGGCT
CTAGATCCAAGCGCGCTAGCCCCTCCCCCAACCTGCACGAGGTTGCATGA
GGTCAGGACGCGCGTCGACGGAAAACCCGCCATTACTGCAGAAATAAAAG
TGTTGTGGATGAGACTCGCTCGTCTAGTGCTTTGGTGGGCAAGACGCAAG
ACTTGGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10402:485..4441+

>mRNA_S-firma_F_contig10402.586.1 ID=mRNA_S-firma_F_contig10402.586.1|Name=mRNA_S-firma_F_contig10402.586.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2358bp|location=Sequence derived from alignment at S-firma_F_contig10402:485..4441+ (Sphaerotrichia firma ET2_F female)
ATGCGGAAGGCGGGCCTGCTGCCCACCACCGTCAGCTTCAGCACGGCGGT
GAAGTCCTGCGAGAGGGCCGGCAGAGCGGACGAGATGCGGAAGGCGGGCC
TGCTGCCCACCACCGTCAGCTTCAGCACGGCGGTGAAGTCCTGCGAGAGG
GCCGGCAGAGCGGACGAGGTGTTGTCCCTGTTAGGCAGGATGAAGTCGGG
GGGCGTGCGGCGCAACCTGACGACGTTCCACTCCGCGCTCCACGCTTGTG
CCAAGGTGTTGTCCCTGTTAGGCAGGATGAAGTCGGGGGGCGTGCGGCGC
AACCTGACGACGTTCCACTCCGCGCTCCACGCTTGTGCCAAGGACGGCAG
AAGAGAGGAGGCGTTTCGCCTGTTGTCGGAGATGAAGCAGGAAGGGGTCG
CCGCGGACGAGAAGACGTTCCGGCTGGCCATCCAGGCGTGCGGGACGGCA
GAAGAGAGGAGGCGTTTCGCCTGTTGTCGGAGATGAAGCAGGAAGGGGTC
GCCGCGGACGAGAAGACGTTCCGGCTGGCCATCCAGGCGTGCGGGCGCGC
GGGCGACACGGCGGGGGCCCTCGCGATCCTCCGAGGCATGGCGAAGGCAG
GGGTGCCTCCCGGGGAGCACTCGCTCGCGTCCACCATGGAGGCGTTCTCC
CTGAAGGGCGACGTCGATGCGGTGCTCTCCCTTGTCAAGGCGCGCGGGCG
ACACGGCGGGGGCCCTCGCGATCCTCCGAGGCATGGCGAAGGCAGGGGTG
CCTCCCGGGGAGCACTCGCTCGCGTCCACCATGGAGGCGTTCTCCCTGAA
GGGCGACGTCGATGCGGTGCTCTCCCTTGTCAAGGAAGCACGGGGGGGGG
CGGCGACCGAGAACCCCGGAAACGGCGGGGGGCAGGGCAAGCCGTTCTGG
TCCTGCATCGTGGTGGCCGCCAAGGCTTGCGCCGCCGCAGGCCGGCCCGC
CGCCGCCGTCGGCCTGCTGCGGGAGCTCCCCCCGGACGACGACGCCGATC
GCACGTGCCCCCCTACTGCCGTCGCCGACGTTGCGCCTGCGGCCGCCGCC
GCCGCCGCCGCCGCCGCCGCGGTGCTACGAGTCGAGAACACAGACCGCCA
CCTTCACGGCCAGCATCAGGGGCAGGGGCAGCAGCGGCAGCAGCAGTGGC
AGCAGCGGCAGCAGCAGCATCAGCGGGCACCGAGGGAAAAGTTGGCGGGC
CAGAGTCAACGGCCTCCGGGGCGCGATGCGAGACCCGCGAGCAGCCCCGC
CTCCGCGTCTGCGTCGAGCCTCGACCCGAAGCAGGCGAACACGCCGCCGC
CGCCGCCGCGGCGGCGGCGGCGGCGGGGCCAACACGAGGCGGAGGAGGGG
GGCGAGGACCTCACCAGCAGCAGCTCCGCGTTCTTCACGACGGTGGGGAG
GCGGGAGCTCGCCTGGAGCCAGGTGCTGTGGGCGGCGGCCGGGGCGGGCC
AGGCGTCGGCGATGGCGGAGCTTCTGGTGGCCGTGCGCGAGGAGGAGGAC
GGTCTCTTGAAGCTCACGGGCGCGTCCTATGTGTTCAACCGGGCGTTGAG
GGTGTTGGCGGATTTTTATCGTACGGACGGCCCGCTCCGCGGCTGAGAAG
CACGGGGGGGGGCGGCGACCGAGAACCCCGGAAACGGCGGGGGGCAGGGC
AAGCCGTTCTGGTCCTGCATCGTGGTGGCCGCCAAGGCTTGCGCCGCCGC
AGGCCGGCCCGCCGCCGCCGTCGGCCTGCTGCGGGAGCTCCCCCCGGACG
ACGACGCCGATCGCACGTGCCCCCCTACTGCCGTCGCCGACGTTGCGCCT
GCGGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGTGCTACGAGTCGAGAA
CACAGACCGCCACCTTCACGGCCAGCATCAGGGGCAGGGGCAGCAGCGGC
AGCAGCAGTGGCAGCAGCGGCAGCAGCAGCATCAGCGGGCACCGAGGGAA
AAGTTGGCGGGCCAGAGTCAACGGCCTCCGGGGCGCGATGCGAGACCCGC
GAGCAGCCCCGCCTCCGCGTCTGCGTCGAGCCTCGACCCGAAGCAGGCGA
ACACGCCGCCGCCGCCGCCGCGGCGGCGGCGGCGGCGGGGCCAACACGAG
GCGGAGGAGGGGGGCGAGGACCTCACCAGCAGCAGCTCCGCGTTCTTCAC
GACGGTGGGGAGGCGGGAGCTCGCCTGGAGCCAGGTGCTGTGGGCGGCGG
CCGGGGCGGGCCAGGCGTCGGCGATGGCGGAGCTTCTGGTGGCCGTGCGC
GAGGAGGAGGACGGTCTCTTGAAGCTCACGGGCGCGTCCTATGTGTTCAA
CCGGGCGTTGAGGGTGTTGGCGGATTTTTATCGTACGGACGGCCCGCTCC
GCGGCTGA
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