mRNA_S-firma_F_contig1000.57.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1000.57.1
Unique NamemRNA_S-firma_F_contig1000.57.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1000.57.1 vs. uniprot
Match: A0A6H5KBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF2_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.740e-5
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 VSRARVALEGLEEGRRHAGRWCRWVSSALAAAD 99
            VSRAR  L+ L+EGR HAGRWCRW SSAL AA+
Sbjct:  696 VSRAREVLDALDEGREHAGRWCRWASSALVAAE 728
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BLAST of mRNA_S-firma_F_contig1000.57.1 vs. uniprot
Match: D7G2T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T0_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 4.000e-5
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 VSRARVALEGLEEGRRHAGRWCRWVSSALAAAD 99
            V+RAR  L+ L+EGR HAGRWCRW SSAL AA+
Sbjct:  424 VTRAREVLDALDEGREHAGRWCRWASSALVAAE 456
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1000.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBF2_9PHAE1.740e-572.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2T0_ECTSI4.000e-569.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1000contigS-firma_F_contig1000:1282..2311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size495
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815523.2070167-CDS-S-firma_F_contig1000:1281..14141622815523.2070167-CDS-S-firma_F_contig1000:1281..1414Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1000 1282..1414 +
1696949385.757097-CDS-S-firma_F_contig1000:1281..14141696949385.757097-CDS-S-firma_F_contig1000:1281..1414Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1000 1282..1414 +
1622815523.222365-CDS-S-firma_F_contig1000:1949..23111622815523.222365-CDS-S-firma_F_contig1000:1949..2311Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1000 1950..2311 +
1696949385.8377447-CDS-S-firma_F_contig1000:1949..23111696949385.8377447-CDS-S-firma_F_contig1000:1949..2311Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1000 1950..2311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1000.57.1prot_S-firma_F_contig1000.57.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1000 1282..2311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1000.57.1

>prot_S-firma_F_contig1000.57.1 ID=prot_S-firma_F_contig1000.57.1|Name=mRNA_S-firma_F_contig1000.57.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=165bp
VSRARVALEGLEEGRRHAGRWCRWVSSALAAADAEGGGGAAGSGGQTAAT
TGPFPAGTPGRGDLVASSSPPSGVTETQGGDDTAGGPVRSSDRVAPPPSS
DSDTGLQQKQQQQQQLLERAGALQEELERRVLATHGTPGETSAGGVPALL
AAVEAGLRLQEEKGG
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mRNA from alignment at S-firma_F_contig1000:1282..2311+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1000.57.1 ID=mRNA_S-firma_F_contig1000.57.1|Name=mRNA_S-firma_F_contig1000.57.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1030bp|location=Sequence derived from alignment at S-firma_F_contig1000:1282..2311+ (Sphaerotrichia firma ET2_F female)
GTCTCGCGCGCCCGTGTAGCCCTGGAGGGCTTGGAGGAGGGAAGGAGGCA
TGCCGGCCGGTGGTGCAGGTGGGTGTCCTCGGCGCTGGCGGCGGCGGATG
CGGAAGGTGGCGGTGGTGCTGCGGGGAGTGGAGGTGAGAGTTTCGGTTGT
TGTTGTTGTTGTTGGTGGTGGTGGTGGGTGTGGTGGTGTGTGGCGGTGGT
TGTTGGCTTGTTGTTTTTGGTGGCGTGGTGGTGTCGGTGTCGGTGTTTGA
TGGCTGTTGTTGGTGGCGGGGGTTGTTGTAGGCGGTGGTGGTGATGGTGG
TGGCAGTTGTGTCGTTGGTTGCCGCGGTTTTTAATAAATTTTCTACATCC
GTCAGCCGTATACGTCCGTCCTGTGAATAAGTCGTTCAAGGGGGACTGTT
GTATACACTCACCCTCCCCGTCCCAGCCAACAGCACCAAATCCGATGCTG
TTTTTTATTGCGCAACGTCGGTGGCCAACCGCAGCATCACCGGGAAGACA
CCCGTCCGTACAACAGAGGTATCTTAGCTCATACGTGTAGAAAATCTTGA
TTCCGACACCATCCGTGGTGCATCTGCTGGAGACAGGAGAATAAACTCCT
TACATCCGGCTCGCCATCCTTGCCGCATCCTTGCTGCGTTTCTTGCACTT
CCTCGCAAAACGCATCAGGGCAAACGGCGGCGACGACAGGACCGTTCCCA
GCAGGTACCCCTGGAAGGGGAGACCTCGTAGCCTCTTCCTCGCCTCCTTC
GGGGGTAACGGAAACGCAAGGAGGCGACGACACCGCAGGGGGTCCCGTAA
GATCATCCGATAGAGTTGCGCCTCCCCCCTCCTCCGACAGCGACACCGGC
TTGCAACAAAAGCAGCAGCAGCAGCAGCAGCTGCTGGAAAGAGCGGGGGC
TCTGCAGGAGGAGTTGGAGAGGCGCGTACTGGCGACACACGGGACCCCTG
GAGAGACTTCGGCGGGCGGCGTGCCGGCCCTGCTTGCTGCGGTCGAAGCG
GGCCTGCGGCTGCAGGAGGAAAAAGGCGGC
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Coding sequence (CDS) from alignment at S-firma_F_contig1000:1282..2311+

>mRNA_S-firma_F_contig1000.57.1 ID=mRNA_S-firma_F_contig1000.57.1|Name=mRNA_S-firma_F_contig1000.57.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=990bp|location=Sequence derived from alignment at S-firma_F_contig1000:1282..2311+ (Sphaerotrichia firma ET2_F female)
GTCTCGCGCGCCCGTGTAGCCCTGGAGGGCTTGGAGGAGGGAAGGAGGCA
TGCCGGCCGGTGGTGCAGGTGGGTGTCCTCGGCGCTGGCGGCGGCGGATG
CGGAAGGTGGCGGTGGTGCTGCGGGGAGTGGAGGTCTCGCGCGCCCGTGT
AGCCCTGGAGGGCTTGGAGGAGGGAAGGAGGCATGCCGGCCGGTGGTGCA
GGTGGGTGTCCTCGGCGCTGGCGGCGGCGGATGCGGAAGGTGGCGGTGGT
GCTGCGGGGAGTGGAGGGCAAACGGCGGCGACGACAGGACCGTTCCCAGC
AGGTACCCCTGGAAGGGGAGACCTCGTAGCCTCTTCCTCGCCTCCTTCGG
GGGTAACGGAAACGCAAGGAGGCGACGACACCGCAGGGGGTCCCGTAAGA
TCATCCGATAGAGTTGCGCCTCCCCCCTCCTCCGACAGCGACACCGGCTT
GCAACAAAAGCAGCAGCAGCAGCAGCAGCTGCTGGAAAGAGCGGGGGCTC
TGCAGGAGGAGTTGGAGAGGCGCGTACTGGCGACACACGGGACCCCTGGA
GAGACTTCGGCGGGCGGCGTGCCGGCCCTGCTTGCTGCGGTCGAAGCGGG
CCTGCGGCTGCAGGAGGAAAAAGGCGGCGGCAAACGGCGGCGACGACAGG
ACCGTTCCCAGCAGGTACCCCTGGAAGGGGAGACCTCGTAGCCTCTTCCT
CGCCTCCTTCGGGGGTAACGGAAACGCAAGGAGGCGACGACACCGCAGGG
GGTCCCGTAAGATCATCCGATAGAGTTGCGCCTCCCCCCTCCTCCGACAG
CGACACCGGCTTGCAACAAAAGCAGCAGCAGCAGCAGCAGCTGCTGGAAA
GAGCGGGGGCTCTGCAGGAGGAGTTGGAGAGGCGCGTACTGGCGACACAC
GGGACCCCTGGAGAGACTTCGGCGGGCGGCGTGCCGGCCCTGCTTGCTGC
GGTCGAAGCGGGCCTGCGGCTGCAGGAGGAAAAAGGCGGC
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