mRNA_S-firma_F_contig10355.506.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10355.506.1 vs. uniprot
Match: A0A6H5L7S3_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S3_9PHAE) HSP 1 Score: 341 bits (875), Expect = 3.270e-102 Identity = 234/381 (61.42%), Postives = 270/381 (70.87%), Query Frame = 1
Query: 13 EEEISALLLRVSASEGRSRRIAEDKEAQLREVEKAAVKSLEAAERRRVEWEEKASTMAARLRERDAEGARRDRLVKELEARLARARVEASEAQENKTSELRRLAGELGVTRKALSDREARGRSEVERLGRRLRDEEGKAAAAAAKLKTLEQRARFLETGAAAARQRAEAGARTEKNVSERLAEAETERACQEVTVTTLRAQLEELRRGEAAGAAALREAAKLKKLLEGALRQPASTSNRSSDTESXXXXXXXXXXXXAPATATAAAEGAKDGRRGHGEDASTGHHRGGTTDSLVELAERLLRQAGGVDRELEAVREALTAARNENKTLRARDQDAAELRSLLEQKRGVSAQLARGAEAARARAECADIAIGEVKAEAASLR 1155
EEEISALLLRV ASE RSRR++EDK +LREVE+AAVKSLEAAERRR EWE KAS +AARLRER+AEGAR+DR+VK+LE RL RA+ +ASE QE + SELRR+AGEL V RKALSDREAR R E RL RRLR++E KA A L+ LEQRA+FLETG AARQRAEA AR EK VSERLAEAETERACQEV VTTL+AQLEELRRG AAG AALRE AKL+K+LEGA + T A G +D R G S G +SLVELAE+L + + REL++VR+AL AR L AR++DAAELRSLLEQKRGVSA+LA GAEAAR RAE A+ ++ A+ SLR
Sbjct: 767 EEEISALLLRVGASESRSRRLSEDKAERLREVEEAAVKSLEAAERRRAEWENKASAIAARLREREAEGARKDRVVKDLEGRLGRAQAQASEVQEREGSELRRVAGELEVMRKALSDREARAREETGRLERRLREDEKKACKTTAGLRKLEQRAKFLETGIVAARQRAEAAARKEKEVSERLAEAETERACQEVAVTTLKAQLEELRRGAAAGDAALRETAKLRKILEGAALRHVGTQ--------------------PVVAADCGKSGRRDDTRSGGGSTSKNGRGGAGGESLVELAEKLQGRTDELGRELDSVRQALAMARERFPALLAREKDAAELRSLLEQKRGVSARLASGAEAARVRAERAESQAKKMVADGVSLR 1127
BLAST of mRNA_S-firma_F_contig10355.506.1 vs. uniprot
Match: D7G3L4_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L4_ECTSI) HSP 1 Score: 334 bits (857), Expect = 7.210e-100 Identity = 232/387 (59.95%), Postives = 273/387 (70.54%), Query Frame = 1
Query: 16 EEISALLLRVSASEGRSRRIAEDKEAQLREVEKAAVKSLEAAERRRVEWEEKASTMAARLRERDAEGARRDRLVKELEARLARARVEASEAQENKTSELRRLAGELGVTRKALSDREARGRSEVERLGRRLRDEEGKAAAAAAKLKTLEQRARFLETGAAAARQRAEAGARTEKNVSERLAEAETERACQEVTVTTLRAQLEELRRGEAAGAAALREAAKLKKLLEGALRQPASTSNRSSDTESXXXXXXXXXXXXAPATATAAAEGAKDGRRGHGEDASTGHHRGGTT-------DSLVELAERLLRQAGGVDRELEAVREALTAARNENKTLRARDQDAAELRSLLEQKRGVSAQLARGAEAARARAECADIAIGEVKAEAASLR 1155
EEISALLLRV ASE RSRR++EDK +LREVE+AAVKSLEAAERRR EWE KAS +AARLRER+AEG R+DR+VK+LE RL RA + SE QE + SELRR+AGEL V RKALSDREAR R E RL RRLR+EE KA A L+ LEQ A+FLETG AARQRAEA AR EK VSERLAEAETERACQE+ VTTL+AQLEELRRG AAG AALREAAKL+ +LEGA + T AA+ K GRR +D ++G G + LVELA++L + +D+EL++VR+AL R EN+ L AR++DAAELRSLLEQKRGVSA+LA GAEAARARAE A+ ++ A+ SLR
Sbjct: 774 EEISALLLRVGASESRSRRLSEDKAERLREVEEAAVKSLEAAERRRAEWENKASAIAARLREREAEGTRKDRVVKDLEGRLGRAHAQTSEVQEREGSELRRVAGELEVMRKALSDREARAREETGRLERRLREEEKKACKNTAGLRKLEQHAKFLETGVVAARQRAEAAARKEKEVSERLAEAETERACQEIAVTTLKAQLEELRRGAAAGDAALREAAKLRNILEGAALRHMGTQP------------------------VVAADCGKSGRR---DDTTSGGGSSGKNXXXXXXGEGLVELAKKLQGRTDELDQELDSVRKALAMGREENQALLAREKDAAELRSLLEQKRGVSARLASGAEAARARAERAESQAEKMVADRVSLR 1133 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10355.506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10355.506.1 >prot_S-firma_F_contig10355.506.1 ID=prot_S-firma_F_contig10355.506.1|Name=mRNA_S-firma_F_contig10355.506.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=386bp VREREEEISALLLRVSASEGRSRRIAEDKEAQLREVEKAAVKSLEAAERRback to top mRNA from alignment at S-firma_F_contig10355:288..4970- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10355.506.1 ID=mRNA_S-firma_F_contig10355.506.1|Name=mRNA_S-firma_F_contig10355.506.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4683bp|location=Sequence derived from alignment at S-firma_F_contig10355:288..4970- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10355:288..4970- >mRNA_S-firma_F_contig10355.506.1 ID=mRNA_S-firma_F_contig10355.506.1|Name=mRNA_S-firma_F_contig10355.506.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2316bp|location=Sequence derived from alignment at S-firma_F_contig10355:288..4970- (Sphaerotrichia firma ET2_F female)back to top |