prot_S-firma_M_contig9162.20104.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9162.20104.1
Unique Nameprot_S-firma_M_contig9162.20104.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length346
Homology
[Close]
BLAST of mRNA_S-firma_M_contig9162.20104.1 vs. uniprot
Match: A0A6H5JD86_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JD86_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 2.290e-58
Identity = 213/351 (60.68%), Postives = 230/351 (65.53%), Query Frame = 0 
Query:    1 MRAPPSHQAAVATAPVAATN--GPTLAEAIAARXXXXXXXXXXXXXXXXXXXXXXXXXXVVMVLKGLLGEEAFSEVKEISADYRSGWVMPGEYLKAMEDRLPADRFGELFEGLIGTLPDEGKRREMQVLLAASRSVKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKHKPRGKADKANGGTTVNG---GAXXXXXXXXXXXXXXXXXXXXXXPGSAATWLKAMGTKTGG-TRPGGTGISIVRPSARSGGTASGXXXXXXXXITAAAGGYSGSRLQCNPGVGARSDSPPPGVPLRRRRGEE 345
            MRAP  H  A A+ P+AA N  GPTLA++IAAR    XXXXXXXXXXXXX         VVM LK LLGEE F++VKEISA YRSGW+MPGEY KAME+RLP +RFGELFEGLIGTLPD+ KRREMQVLLAASRSVKA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                           GK K RGK  K+NG  + NG     XXXXXXXX              PGSAATWLKAMGTKTGG  + GGTGISIVRPSAR+   +          IT+AAGGYSGSRLQCNPGV AR +SPPPG PLRRR  EE
Sbjct:  545 MRAP--HPPAQAS-PIAAANSSGPTLAQSIAARQQPQXXXXXXXXXXXXXS--------VVMELKELLGEEVFADVKEISASYRSGWMMPGEYFKAMEERLPEERFGELFEGLIGTLPDQDKRREMQVLLAASRSVKAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGSESWPEVGGNASSAGAAG----------------------GKAKTRGKQAKSNGAAS-NGRXXXXXXXXXXXXKSKTSPSTVAGAKTPGSAATWLKAMGTKTGGGAKTGGTGISIVRPSARASAGSGNPAPNASSTITSAAGGYSGSRLQCNPGVRARPESPPPGAPLRRRDDEE 861
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9162.20104.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JD86_9PHAE2.290e-5860.68RING-type domain-containing protein n=2 Tax=Ectoca... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..346
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9162contigS-firma_M_contig9162:2648..4182 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9162.20104.1mRNA_S-firma_M_contig9162.20104.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9162 2648..4278 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9162.20104.1 ID=prot_S-firma_M_contig9162.20104.1|Name=mRNA_S-firma_M_contig9162.20104.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=346bp
MRAPPSHQAAVATAPVAATNGPTLAEAIAARQQQRQQQQQQGPAGAAAAA
AGGGPPSVVMVLKGLLGEEAFSEVKEISADYRSGWVMPGEYLKAMEDRLP
ADRFGELFEGLIGTLPDEGKRREMQVLLAASRSVKAKAAAKKKNKKKAPA
TTDDAPSASATLTANGTAAAAGAAAAAAAAPDPAAGSASTATPPPPQQQE
SWPGVGESSGGGGTGKHKPRGKADKANGGTTVNGGAGGKAGGGGSNKSSP
SVSAKKPSPGSAATWLKAMGTKTGGTRPGGTGISIVRPSARSGGTASGGG
GGSGSSITAAAGGYSGSRLQCNPGVGARSDSPPPGVPLRRRRGEEE
back to top