mRNA_S-firma_M_contig9162.20104.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9162.20104.1
Unique NamemRNA_S-firma_M_contig9162.20104.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9162.20104.1 vs. uniprot
Match: A0A6H5JD86_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JD86_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 2.190e-64
Identity = 222/360 (61.67%), Postives = 239/360 (66.39%), Query Frame = 1 
Query:   70 VEDFPLAPGMRAPPSHQAAVATAPVAATN--GPTLAEAIAARXXXXXXXXXXXXXXXXXXXXXXXXXXVVMVLKGLLGEEAFSEVKEISADYRSGWVMPGEYLKAMEDRLPADRFGELFEGLIGTLPDEGKRREMQVLLAASRSVKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKHKPRGKADKANGGTTVNG---GAXXXXXXXXXXXXXXXXXXXXXXPGSAATWLKAMGTKTGG-TRPGGTGISIVRPSARSGGTASGXXXXXXXXITAAAGGYSGSRLQCNPGVGARSDSPPPGVPLRRRRGEE 1131
            VEDFPLAPGMRAP  H  A A+ P+AA N  GPTLA++IAAR    XXXXXXXXXXXXX         VVM LK LLGEE F++VKEISA YRSGW+MPGEY KAME+RLP +RFGELFEGLIGTLPD+ KRREMQVLLAASRSVKA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                           GK K RGK  K+NG  + NG     XXXXXXXX              PGSAATWLKAMGTKTGG  + GGTGISIVRPSAR+   +          IT+AAGGYSGSRLQCNPGV AR +SPPPG PLRRR  EE
Sbjct:  536 VEDFPLAPGMRAP--HPPAQAS-PIAAANSSGPTLAQSIAARQQPQXXXXXXXXXXXXXS--------VVMELKELLGEEVFADVKEISASYRSGWMMPGEYFKAMEERLPEERFGELFEGLIGTLPDQDKRREMQVLLAASRSVKAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGSESWPEVGGNASSAGAAG----------------------GKAKTRGKQAKSNGAAS-NGRXXXXXXXXXXXXKSKTSPSTVAGAKTPGSAATWLKAMGTKTGGGAKTGGTGISIVRPSARASAGSGNPAPNASSTITSAAGGYSGSRLQCNPGVRARPESPPPGAPLRRRDDEE 861
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9162.20104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JD86_9PHAE2.190e-6461.67RING-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9162contigS-firma_M_contig9162:2648..4278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.0
Seed ortholog evalue2.2e-52
Seed eggNOG ortholog2880.D7FHL2
Preferred nameZNF598
KEGG koko:K22381
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006325,GO:0006412,GO:0006414,GO:0006417,GO:0006464,GO:0006513,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0030163,GO:0031323,GO:0031326,GO:0032268,GO:0032446,GO:0034248,GO:0034641,GO:0034645,GO:0036205,GO:0036211,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0051276,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:2000112,GO:2000765
EggNOG free text desc.rescue of stalled ribosome
EggNOG OGsCOG5236@1,KOG2231@2759
EC2.3.2.27
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size1134
Cds size1038
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9162.20104.1prot_S-firma_M_contig9162.20104.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9162 2648..4182 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828742.4223747-CDS-S-firma_M_contig9162:2647..33711622828742.4223747-CDS-S-firma_M_contig9162:2647..3371Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9162 2648..3371 -
1697105135.210183-CDS-S-firma_M_contig9162:2647..33711697105135.210183-CDS-S-firma_M_contig9162:2647..3371Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9162 2648..3371 -
1622828742.4391253-CDS-S-firma_M_contig9162:3868..41821622828742.4391253-CDS-S-firma_M_contig9162:3868..4182Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9162 3869..4182 -
1697105135.223116-CDS-S-firma_M_contig9162:3868..41821697105135.223116-CDS-S-firma_M_contig9162:3868..4182Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9162 3869..4182 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828742.4522665-UTR-S-firma_M_contig9162:4182..42781622828742.4522665-UTR-S-firma_M_contig9162:4182..4278Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9162 4183..4278 -
1697105135.2340589-UTR-S-firma_M_contig9162:4182..42781697105135.2340589-UTR-S-firma_M_contig9162:4182..4278Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9162 4183..4278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9162.20104.1

>prot_S-firma_M_contig9162.20104.1 ID=prot_S-firma_M_contig9162.20104.1|Name=mRNA_S-firma_M_contig9162.20104.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=346bp
MRAPPSHQAAVATAPVAATNGPTLAEAIAARQQQRQQQQQQGPAGAAAAA
AGGGPPSVVMVLKGLLGEEAFSEVKEISADYRSGWVMPGEYLKAMEDRLP
ADRFGELFEGLIGTLPDEGKRREMQVLLAASRSVKAKAAAKKKNKKKAPA
TTDDAPSASATLTANGTAAAAGAAAAAAAAPDPAAGSASTATPPPPQQQE
SWPGVGESSGGGGTGKHKPRGKADKANGGTTVNGGAGGKAGGGGSNKSSP
SVSAKKPSPGSAATWLKAMGTKTGGTRPGGTGISIVRPSARSGGTASGGG
GGSGSSITAAAGGYSGSRLQCNPGVGARSDSPPPGVPLRRRRGEEE
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mRNA from alignment at S-firma_M_contig9162:2648..4278-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9162.20104.1 ID=mRNA_S-firma_M_contig9162.20104.1|Name=mRNA_S-firma_M_contig9162.20104.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1631bp|location=Sequence derived from alignment at S-firma_M_contig9162:2648..4278- (Sphaerotrichia firma Sfir_13m male)
CCCGGTTAGTGCTTCCTCCGCGCCCCCCCCCCTCCGCCGCCGCCGGCCCG
ATCGCCGTCGCCCCCGCCGGTGGAGGACTTCCCCCTCGCGCCCGGGATGA
GGGCTCCGCCGTCTCATCAGGCGGCCGTTGCCACCGCCCCCGTGGCTGCC
ACCAATGGCCCGACACTCGCCGAGGCTATCGCTGCGAGGCAACAGCAACG
GCAGCAGCAGCAACAGCAAGGCCCTGCAGGGGCGGCGGCAGCGGCGGCGG
GAGGAGGGCCCCCCTCGGTGGTGATGGTGCTGAAGGGCTTGCTCGGCGAA
GAGGCGTTTTCGGAGGTCAAGGAGATTTCGGCGGACTACCGATCGGGTTG
GGTGATGCCCGGGGAGTACTTGAAGGCCATGGAGGACCGGCTGCCGGCGG
ATCGATTCGGGTGTGTGTTTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTTTTTGTAGCTTGCATCGCCCGCGCTAACCGGT
TGACCAACGAAAAGACGTCAGCCTTCAGCGGGGTAAAAACGCAAACACGC
TTTCTAAGTGTGTGTGTGTTGTTTTTTTGTGTTCGCGAGGTTGGTTTAGT
TGGGGTTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTGGTGGTG
GTTGCTTGTGTGTGTGTGTTTGTATGTGTGTGTGTGGCTTGGATAGGGCC
TGCGTTTCGGCCGTGCTTCGGCTGCTCTTGCGTGATGCGCGTGACGTGTG
GGTCTTTTCGCTCCTTGCCGCTTCGTCCTCTTGGTCCGTCTCGCAAGGTG
CCTGGAAAAGGACGAAGAGCGACGAAGCGATGTTTTGTTCCACGTGCCTC
TCGTCGTGCTGTCACGCTTGCTTTTGCGTTTCTTGCCTCTATTGTTACCC
CTCGCAGGGAGCTATTCGAAGGGCTTATCGGTACCCTCCCGGACGAAGGG
AAGCGACGAGAGATGCAGGTGCTGCTGGCGGCGAGCCGCTCTGTCAAGGC
CAAGGCAGCGGCGAAGAAGAAGAACAAGAAAAAGGCACCCGCCACCACCG
ACGACGCGCCCTCCGCATCAGCAACGCTCACAGCCAACGGCACTGCTGCT
GCCGCCGGCGCCGCCGCTGCTGCTGCGGCTGCTCCTGATCCTGCCGCTGG
CTCCGCCTCAACGGCAACACCACCGCCGCCGCAGCAGCAGGAAAGCTGGC
CGGGGGTCGGTGAGTCGTCCGGGGGTGGGGGCACCGGGAAGCACAAGCCC
CGAGGCAAGGCCGACAAGGCCAACGGCGGCACCACCGTCAACGGCGGCGC
CGGCGGGAAGGCGGGAGGAGGCGGATCTAACAAATCATCGCCCAGCGTCT
CCGCCAAGAAGCCCAGCCCGGGGAGCGCGGCCACCTGGCTGAAGGCCATG
GGCACCAAGACGGGGGGCACGCGACCGGGGGGGACGGGGATCTCGATCGT
TCGCCCGTCCGCGAGAAGCGGCGGAACTGCCTCCGGCGGTGGCGGCGGCT
CTGGCTCCAGCATCACCGCCGCGGCCGGCGGCTACAGCGGGAGCAGGTTG
CAGTGCAACCCCGGGGTCGGGGCAAGGTCGGACTCGCCCCCGCCGGGGGT
CCCACTCCGCCGCCGCCGGGGCGAAGAAGAG
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Coding sequence (CDS) from alignment at S-firma_M_contig9162:2648..4278-

>mRNA_S-firma_M_contig9162.20104.1 ID=mRNA_S-firma_M_contig9162.20104.1|Name=mRNA_S-firma_M_contig9162.20104.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2076bp|location=Sequence derived from alignment at S-firma_M_contig9162:2648..4278- (Sphaerotrichia firma Sfir_13m male)
ATGAGGGCTCCGCCGTCTCATCAGGCGGCCGTTGCCACCGCCCCCGTGGC
TGCCACCAATGGCCCGACACTCGCCGAGGCTATCGCTGCGAGGCAACAGC
AACGGCAGCAGCAGCAACAGCAAGGCCCTGCAGGGGCGGCGGCAGCGGCG
GCGGGAGGAGGGCCCCCCTCGGTGGTGATGGTGCTGAAGGGCTTGCTCGG
CGAAGAGGCGTTTTCGGAGGTCAAGGAGATTTCGGCGGACTACCGATCGG
GTTGGGTGATGCCCGGGGAGTACTTGAAGGCCATGGAGGACCGGCTGCCG
GCGGATCGATTCGGATGAGGGCTCCGCCGTCTCATCAGGCGGCCGTTGCC
ACCGCCCCCGTGGCTGCCACCAATGGCCCGACACTCGCCGAGGCTATCGC
TGCGAGGCAACAGCAACGGCAGCAGCAGCAACAGCAAGGCCCTGCAGGGG
CGGCGGCAGCGGCGGCGGGAGGAGGGCCCCCCTCGGTGGTGATGGTGCTG
AAGGGCTTGCTCGGCGAAGAGGCGTTTTCGGAGGTCAAGGAGATTTCGGC
GGACTACCGATCGGGTTGGGTGATGCCCGGGGAGTACTTGAAGGCCATGG
AGGACCGGCTGCCGGCGGATCGATTCGGGGAGCTATTCGAAGGGCTTATC
GGTACCCTCCCGGACGAAGGGAAGCGACGAGAGATGCAGGTGCTGCTGGC
GGCGAGCCGCTCTGTCAAGGCCAAGGCAGCGGCGAAGAAGAAGAACAAGA
AAAAGGCACCCGCCACCACCGACGACGCGCCCTCCGCATCAGCAACGCTC
ACAGCCAACGGCACTGCTGCTGCCGCCGGCGCCGCCGCTGCTGCTGCGGC
TGCTCCTGATCCTGCCGCTGGCTCCGCCTCAACGGCAACACCACCGCCGC
CGCAGCAGCAGGAAAGCTGGCCGGGGGTCGGTGAGTCGTCCGGGGGTGGG
GGCACCGGGAAGCACAAGCCCCGAGGCAAGGCCGACAAGGCCAACGGCGG
CACCACCGTCAACGGCGGCGCCGGCGGGAAGGCGGGAGGAGGCGGATCTA
ACAAATCATCGCCCAGCGTCTCCGCCAAGAAGCCCAGCCCGGGGAGCGCG
GCCACCTGGCTGAAGGCCATGGGCACCAAGACGGGGGGCACGCGACCGGG
GGGGACGGGGATCTCGATCGTTCGCCCGTCCGCGAGAAGCGGCGGAACTG
CCTCCGGCGGTGGCGGCGGCTCTGGCTCCAGCATCACCGCCGCGGCCGGC
GGCTACAGCGGGAGCAGGTTGCAGTGCAACCCCGGGGTCGGGGCAAGGTC
GGACTCGCCCCCGCCGGGGGTCCCACTCCGCCGCCGCCGGGGCGAAGAAG
AGGGAGCTATTCGAAGGGCTTATCGGTACCCTCCCGGACGAAGGGAAGCG
ACGAGAGATGCAGGTGCTGCTGGCGGCGAGCCGCTCTGTCAAGGCCAAGG
CAGCGGCGAAGAAGAAGAACAAGAAAAAGGCACCCGCCACCACCGACGAC
GCGCCCTCCGCATCAGCAACGCTCACAGCCAACGGCACTGCTGCTGCCGC
CGGCGCCGCCGCTGCTGCTGCGGCTGCTCCTGATCCTGCCGCTGGCTCCG
CCTCAACGGCAACACCACCGCCGCCGCAGCAGCAGGAAAGCTGGCCGGGG
GTCGGTGAGTCGTCCGGGGGTGGGGGCACCGGGAAGCACAAGCCCCGAGG
CAAGGCCGACAAGGCCAACGGCGGCACCACCGTCAACGGCGGCGCCGGCG
GGAAGGCGGGAGGAGGCGGATCTAACAAATCATCGCCCAGCGTCTCCGCC
AAGAAGCCCAGCCCGGGGAGCGCGGCCACCTGGCTGAAGGCCATGGGCAC
CAAGACGGGGGGCACGCGACCGGGGGGGACGGGGATCTCGATCGTTCGCC
CGTCCGCGAGAAGCGGCGGAACTGCCTCCGGCGGTGGCGGCGGCTCTGGC
TCCAGCATCACCGCCGCGGCCGGCGGCTACAGCGGGAGCAGGTTGCAGTG
CAACCCCGGGGTCGGGGCAAGGTCGGACTCGCCCCCGCCGGGGGTCCCAC
TCCGCCGCCGCCGGGGCGAAGAAGAG
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