mRNA_S-firma_M_contig927.20216.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig927.20216.1
Unique NamemRNA_S-firma_M_contig927.20216.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
[Close]
BLAST of mRNA_S-firma_M_contig927.20216.1 vs. uniprot
Match: A0A6H5JD92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD92_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.900e-13
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 1 
Query: 1237 PVSGATETWACTLGKPMACYDQISETDYKSLVISRQR-MQCAYSCLRQGGFWCQAFGIDGCRFCSLDCDDYCSSNGTIFGEDCDCIQC 1497
            P SG T T  CT G    CYDQ+ E   K L++ R R + C  SCL  GG WC A G+ GCRFC+  CD++C+  G    +DC+CI+C
Sbjct: 1266 PTSGVTFT-ECTPGDSDTCYDQL-EPSMKGLLVERSRGLTCEESCLIDGGLWCDALGLSGCRFCATSCDNFCTEQG--LPDDCECIEC 1349
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig927.20216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JD92_9PHAE2.900e-1346.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig927contigS-firma_M_contig927:5952..12486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_004005.1
Exons10
Model size2774
Cds size1782
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig927.20216.1prot_S-firma_M_contig927.20216.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig927 6895..12417 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828754.2574868-UTR-S-firma_M_contig927:5951..67611622828754.2574868-UTR-S-firma_M_contig927:5951..6761Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig927 5952..6761 -
1697105142.311901-UTR-S-firma_M_contig927:5951..67611697105142.311901-UTR-S-firma_M_contig927:5951..6761Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig927 5952..6761 -
1622828754.274087-UTR-S-firma_M_contig927:6781..68941622828754.274087-UTR-S-firma_M_contig927:6781..6894Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig927 6782..6894 -
1697105142.3257768-UTR-S-firma_M_contig927:6781..68941697105142.3257768-UTR-S-firma_M_contig927:6781..6894Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig927 6782..6894 -
1622828754.4101346-UTR-S-firma_M_contig927:12417..124861622828754.4101346-UTR-S-firma_M_contig927:12417..12486Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig927 12418..12486 -
1697105142.4209754-UTR-S-firma_M_contig927:12417..124861697105142.4209754-UTR-S-firma_M_contig927:12417..12486Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig927 12418..12486 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828754.2879498-CDS-S-firma_M_contig927:6894..70351622828754.2879498-CDS-S-firma_M_contig927:6894..7035Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig927 6895..7035 -
1697105142.3354003-CDS-S-firma_M_contig927:6894..70351697105142.3354003-CDS-S-firma_M_contig927:6894..7035Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig927 6895..7035 -
1622828754.302825-CDS-S-firma_M_contig927:7370..74781622828754.302825-CDS-S-firma_M_contig927:7370..7478Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig927 7371..7478 -
1697105142.3450072-CDS-S-firma_M_contig927:7370..74781697105142.3450072-CDS-S-firma_M_contig927:7370..7478Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig927 7371..7478 -
1622828754.316914-CDS-S-firma_M_contig927:7832..80221622828754.316914-CDS-S-firma_M_contig927:7832..8022Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig927 7833..8022 -
1697105142.356891-CDS-S-firma_M_contig927:7832..80221697105142.356891-CDS-S-firma_M_contig927:7832..8022Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig927 7833..8022 -
1622828754.330798-CDS-S-firma_M_contig927:8488..85981622828754.330798-CDS-S-firma_M_contig927:8488..8598Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig927 8489..8598 -
1697105142.3661647-CDS-S-firma_M_contig927:8488..85981697105142.3661647-CDS-S-firma_M_contig927:8488..8598Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig927 8489..8598 -
1622828754.3435574-CDS-S-firma_M_contig927:9268..94581622828754.3435574-CDS-S-firma_M_contig927:9268..9458Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig927 9269..9458 -
1697105142.3754113-CDS-S-firma_M_contig927:9268..94581697105142.3754113-CDS-S-firma_M_contig927:9268..9458Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig927 9269..9458 -
1622828754.3577588-CDS-S-firma_M_contig927:9695..101291622828754.3577588-CDS-S-firma_M_contig927:9695..10129Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig927 9696..10129 -
1697105142.3841455-CDS-S-firma_M_contig927:9695..101291697105142.3841455-CDS-S-firma_M_contig927:9695..10129Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig927 9696..10129 -
1622828754.3701751-CDS-S-firma_M_contig927:10691..109131622828754.3701751-CDS-S-firma_M_contig927:10691..10913Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig927 10692..10913 -
1697105142.3930557-CDS-S-firma_M_contig927:10691..109131697105142.3930557-CDS-S-firma_M_contig927:10691..10913Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig927 10692..10913 -
1622828754.3827755-CDS-S-firma_M_contig927:11204..113991622828754.3827755-CDS-S-firma_M_contig927:11204..11399Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig927 11205..11399 -
1697105142.4022093-CDS-S-firma_M_contig927:11204..113991697105142.4022093-CDS-S-firma_M_contig927:11204..11399Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig927 11205..11399 -
1622828754.3955116-CDS-S-firma_M_contig927:12225..124171622828754.3955116-CDS-S-firma_M_contig927:12225..12417Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig927 12226..12417 -
1697105142.4115863-CDS-S-firma_M_contig927:12225..124171697105142.4115863-CDS-S-firma_M_contig927:12225..12417Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig927 12226..12417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig927.20216.1

>prot_S-firma_M_contig927.20216.1 ID=prot_S-firma_M_contig927.20216.1|Name=mRNA_S-firma_M_contig927.20216.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=594bp
MPSRGVITAASFALVWLPQAYAVSTAGHHGDTHCERLHTRKIQHSDAHCL
GGNEGMGRPHFCSAVVAFDLPQGFYAHNARVTTKSAERGLKGAAAENFGI
GLNVVHSQGPASDGHVVGPVGRLPSKLSEVDGTGNGNGIVYSIATRVVDQ
YPGLSSKLQVQLRYGDTVEDMLENLPDPADAPGWLSTPASQEIHQGGRDI
MLDVMFCSPPNDHRAEVLGFHLESSPLQHRHGVLPRRASGPTAHTRGHIE
PITLASGRKRMLVSEQAGSSSRDERAQKDQGAVALRGGARDLAAASSGAD
NVEVEVVDTLADAGSCDPYDGGDEWCDSAISSAEQRALNIQGTNIYCSRE
CVDHGALWCNIFGKKNCRMCSDDCDAYCEGKTNCRCHPCPVSGATETWAC
TLGKPMACYDQISETDYKSLVISRQRMQCAYSCLRQGGFWCQAFGIDGCR
FCSLDCDDYCSSNGTIFGEDCDCIQCPDDLEDPPFEMPSETDEEYQSCGD
VDDGDAFCLEQVAEKTRVALETQGMGLECHEECYPGVAWPVWCFAEETVG
CRYCKESCDEYCGEGVPECNSCYTCEGSYSSYSGSYNFQDGAP*
back to top

mRNA from alignment at S-firma_M_contig927:5952..12486-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig927.20216.1 ID=mRNA_S-firma_M_contig927.20216.1|Name=mRNA_S-firma_M_contig927.20216.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=6535bp|location=Sequence derived from alignment at S-firma_M_contig927:5952..12486- (Sphaerotrichia firma Sfir_13m male)
TGACAGGTCACTCAGGGGTACACACACGCACCTCTGAAACCCAGAAGCAC
GACTCCAAACCTCAGAATCATGCCGAGCCGAGGAGTAATAACAGCGGCGA
GCTTCGCGCTCGTGTGGCTGCCGCAAGCCTACGCCGTCTCCACCGCCGGA
CACCATGGTGACACGCATTGCGAACGACTGCATACGCGCAAGATCCAACA
CTCTGACGCCCACTGCCTCGGTGGGAACGAGGGGATGGGCAGGCCTCATT
TCTGCTCAGCGGTGAGGTTGCGTCTGTCGTTCGCTTTTGCTCCACCCATC
CATCTACTACACGATGCAGGGGGATGCACCCATTTCCGCTGTAAGCTCTG
TCTGTTTACTTGTCCTTCGTGTCCTGTGCAGCCTGCAGTACAGGTGTCGT
ACATGTATTCTACATGTGCCGCCGTATCTACGAGACTACTTGTCGTTGCA
CAAAATCCTACGCCGCATACATGCAGCTAGTGGTATAGCCTGTGGTTGTG
AGCACAAAAGGTTCGCTTGAGAGAAGTAAACAACAGAGAGGTCGGAAGTC
CAGGGGATGAAGGAGGAGAGTCCGCTCGGCAAATCGATCGGGGGGCGTTG
GTTGCTCAACGTATGATTTTCTCCGCGGTGCATTGTAACGGATTAAAAAT
CTCGGTGTGTTACCCGCCGCAGCTTATTATTTTCCCTCAACTACAATTGA
GAACACAATGGACAGGGCTGAAGAGGTAGACTACGCTGCTGACATGACCT
GACTGCCGGTACCAGTATTTTGAATCAGATGTTGGCGAGCACGGTCAATC
TTCAGCTTCGTATCAGCACCTTGAATCTGACATTTTTTATCTAGCGAAGA
CTTTTCTATGTGTGCGCATCAATAAATGTATACCTCGCGGTGCAACTGAA
CGCATCGCAACGAACGTTGCACTACTACCGGCGTGCAACGGATCGCCTAC
AGCCATAACGCACATATACATCCATGCCGTTACAATACAATACAGGAAAT
GACCGGCGTGCGCAGCACCTCTTACGCCAATCTTTATGTTCTGCCTCCCA
ACGACTCAATCGATAGCAATTGTGACCTATGCAACAGGTGGTCGCCTTTG
ACCTCCCGCAAGGGTTCTACGCGCACAACGCCCGCGTAACGACCAAGTCC
GCGGAGCGTGGGCTCAAGGGGGCCGCCGCGGAAAACTTCGGAATTGGCCT
GAATGTCGTACACAGCCAGGGCCCAGCTAGTGACGGGCATGTTGTTGGCC
CCGTTGGCCGCTTGCCATCGAAGCTATCGGAGGTACGGTTAGCATCGAGG
CCAGCTGGGTGTACTCTCGCCGTGTGAACCTATCTGTCAAGGTGCGGCGT
TTCATGCTGCCGTTCTGTACCGTTAGACACCTTCACGGCGTTCGACTTTG
TTCCGTTTCCTGCGGGAGACAATTGGGGAAAGAAATTATAATTGTCTATT
CTAATTTCAACGTTAAGGGCAGGGGAAGTTGCAGCGACAACCGTTCGAAC
CGCCCTTCACTACAATCCGCGAAAATCCACAATTTGCTTGCTGTCCGCTC
CTCGCATACGATGCACGTCGCAGGTTGATGGCACTGGCAACGGCAATGGC
ATTGTCTACTCGATCGCCACTCGCGTGGTGGACCAGTACCCTGGACTTAG
CAGCAAACTACAGGTGCAGCTGCGCTACGGCGACACGGTTGAGGACATGC
TCGAGAACTTGCCCGACCCTGCCGATGCGCCGGGATGGCTCTCGACGCCG
GCAAGCCAAGAGATCCACCAAGGGGGGCGCGATATCATGCTGGATGTGAG
TCGAGCGAGTGCCGTGCATTGCCGACGCCAGCGATAGCTGCTTGAGCTGT
TTCGGATAGAGTTTTTACATTATGCTGCGAAATACGCCGAATGAGGTGCA
TACGGCCACAACCGCTACAGTCGTGGTGCCGTGCTAGAGTTTCGCGAGAA
GAATCACCTCAAAAACGATGGATAGTCCCTTGGTTTACTCGGATACTTGA
ACGCACAGACGCGACGGGTGGGAAGCTGTTTCCGTAGAGAGGAAATCTGG
TCGTGTACCTTGATGCCCAAAAACTTGCCACAAACCTTGGTCAGCACGAA
GCCAACCTTTCTCCGTTTTGAACTTCCAAAACCTTTCGAGTTGGTTGTGT
TCACCTATATCCAATCGCCATGCGCCGTAGTTTCGATAAAGGGCGTATCG
CCAAGAGTACACTGCGAATAGATCCGTTGAGACGACCCTCGCGCCTACTC
ACAATTTCACACATTTCCGAAACACACACCTACCGTAATCCGCGAGAAAC
GTGCTGTTTGTCACTCCCTTTCCTTGGCTCCCCCGCACGAAATACTCTAC
TGTGCAGGTCATGTTCTGCTCACCCCCAAACGACCACCGCGCGGAAGTTC
TCGGCTTCCATCTCGAATCGTCTCCCCTCCAGCACCGCCATGGCGTCTTG
CCGCGACGGGCATCTGGCCCGACCGCGCACACTAGAGGCCATATCGAACC
GATCACCTTGGCGAGCGGCCGCAAGAGGATGCTGGTCAGCGAGCAAGCAG
GCAGCAGCAGCAGAGACGAGAGGGCCCAGAAAGACCAGGGCGCGGTTGCT
CTCAGGGGAGGAGCGCGCGACCTAGCCGCAGCGTCCTCTGGTGCCGACAA
CGTCGAAGTCGAGGTGGTGGACACTCTGGCCGATGCGGGTTCGTGTGACC
CGTACGACGGCGGGGACGAGTGGTGCGACTCGGCAATTTCTTCTGCCGAG
CAGAGGGCGTTGAACATTCAGGGGACAAACATATACTGCAGGTGGGTTGG
CTTGAAAGAACAGCAATACACACGTAAAGCACTGCGGTAATCTCAGAAGA
CGACGTATTAGCGATTAGTTTTGCCCACCGTTGGTAGCTCGCTTGCTCTG
ACTCTCTAATTCGCTCCCGTTATCGGAGTTTTGCTCCGAGTCGAAGCCTC
TCCTACACAACCAAACTAACATACGTGCGGTGGCATTTTCTGACTTGCTC
TCCTCCCGCTGTTTTGTCTCCCTTGCAGCCGCGAGTGCGTCGACCACGGT
GCCCTGTGGTGCAACATCTTCGGAAAAAAGAACTGCCGCATGTGCAGCGA
CGACTGTGACGCGTACTGCGAGGGGAAGACGAACTGCAGGTGCCACCCTT
GCCCCGTGTCAGGCGCTACGGAGACGTGGGCGTGCACCCTTGGCAAGCCA
ATGGCTTGCTACGATCAGGTTTGTTCATGTTGGCGTACGCGTTTTAGCAG
GTTTGGCATCGACCTCGTGGTGTGGCAGAGCACCGCAGGGGCAAACAGAC
ATTGCAGCGCAGGTTTACACGGCCCCATCGAGCCGCGGCGTTGGCAGTAC
CCTGATATCAGACAGCACGGAGTGCGAGCACACCCAACGCAACGGCATAC
TTCAGCGAAAAACGCTGTCGTGCTCGCTGGGCCTTGGCCGTTTCACCTTG
TCGCGTATCGCCCGGGATGGCCACAGAAATGAGGGAGGGGAGGGGGTCGA
TATGTGGGTATCGATAGAAAACTCTCGCACCGAGGTGAAATCTGCAACTT
GCTTCGCAGTGAAATGCTACAAGGAGTCATTTCCTCTATAGGGAGTGGGT
GCACTAAGATTCTACAAGCAAAAGCCAGCCAACGAACAATTTGCGACTAG
GCGCTGAAACGCACTTGACTTCACGCCTGTACATGGGCCTACGCACGTAT
GTACACTTGCACCCACCGTGTGGCGATTCTGGTGTCGACAAACCCCGAAC
GCGTCGGCGGTCGGCCCTGCCGTGTAGCTTCATTGGAAATCCAGCGAGGT
GCCGGCAACAATCTTTCTCTGACAACCATGCTTGTACGTCGGCCGTTGTC
GGATTTTTCGTACGTCGTTGTTCGACTCTTTGGCGCAGATCTCAGAGACC
GACTACAAGTCCTTGGTGATCAGTCGGCAGAGAATGCAGTGTGCGTATTC
GTGCCTCAGGCAGGGGGGTTTCTGGTGCCAAGCCTTCGGGATCGACGGGT
GAGCTACGTACCACGTGGACTTCGCATCTGCAGAAAGAGAACAATCACAC
CACACTTACCATCTCCACCACCAACATAGAATGCGCCTTGGTCTTCGTGG
ATGGTGCACCAACTAGCCAGCATCGGCCCTGTTTATTTTGGCGTGGACAT
CGGTCGTCTTTCGCCATGTGACCACCAACCGCCCGGCCAAAAGCGCAACC
AGGTCGGCCCCAGCGCCTTGTATCCCCCCGCGTTCTCCACAATTTGCATA
TTTGAGGGGGCGGCCGATCGACAAAAATACTCACCACAAGTGAGAGGCAA
CAATATACGTTCCGTTATTACGCGTTTGTCCACCTCGATTGGTGCCGCGT
AACACATTCCATCGTCGATGCCGCTTCTGCTCGGCCGTACCACAAGTGAG
AGGCAGCGCGTTTCCGTTTATGGCGCGTTTGCCCGCTGCCTTTGCCGCCA
TGTACATAAAACAGATGCCGCTTCTGCTCGCTGGACTGCGACGACTACTG
CTCGTCCAACGGGACGATATTCGGCGAAGATTGCGACTGTATCCAGTGCC
CCGATGACCTGGAGGACCCGCCCTTCGAGATGCCGAGCGAGACGGACGAA
GAGTACCAGTCGTGCGGGGACGTGGACGACGGAGACGCCTTCTGCTTGGA
ACAGGTGGGTCACCGACGGACTGGCTGAACGACACCGTACGTGTACAAGT
AGCTGACTCGTGTGGCGACTGCTGTGTGTAGGCACACCCACGAGCAATGA
AAAATGCCCTAGCACTCACAGATGTTTTTTGCTTCAAGACACGCGTCAAA
GCTATTTATGTACGCTCGAAGTTTGGTTTAGTTTTGGAGCACTATCGCGC
GAGTTGGTCGTGCTCACGGGCCATAGGAGTAGACTATCGGAAGATGGGCA
AATTCCTGGTTTCCTCGTGTGGGTTAGTTCATAACCGCCAGTCGTCTCAC
AACATGTGGCACGGCTCTGTCTTGGCATCTATCGGCGTCCACCGCGTTTG
TTTGCAAGGTGGCCGAAAAAACGCGTGTGGCACTAGAGACGCAAGGAATG
GGTCTCGAGTGCCACGAGGAATGCTACCCCGGAGTGGCGTGGCCTGTCTG
GTGCTTTGCCGAAGAGGTCAGTCGGTGTTCGATATCAAATCGGTGGTCCT
CGCCTAGTCCCTAGGCTTCCACACCACCTCCACCACCACCACCTGCTACA
AGTAGTGGCTGGCGCATTCGAGAATCACTTCTGCAAGAAAAAAGCAGATG
TTGCCGAGGACTGTGTACTACGGCATATCTATACTGTCGATACTCGAGCA
ACCACGGGTGTTGTTGTAGTCTAGACCACTCGCTCGCAGCTTTGACGCCG
TTCGGTCCAATCGCGACAACCTTGAGGTAAACGGGGGAGGGGGGGCGGAC
TAAGCGATCCTACTCCCTGGCCGCACTTCGGACTCCCCCTGCACCTATCA
GACGGTCGGCTGCCGCTATTGTAAGGAGAGCTGTGACGAGTATTGCGGCG
AGGGGGTGCCTGAGTGCAACTCGTGCTACACCTGCGAGGGCAGCTACAGC
AGCTACAGTGGCAGCTACAACTTCCAAGACGGCGCTCCGTAGAGCGAAAA
AGATAACAGGATGTGTTCGGCAGGAAAATGACGTGGTTGAGCGGCAACGG
TGCGAATAACACATGTTTATTTGTGTTTAGAATGAAATGAAATAAATATA
TTGATTTTCCCATCCATTTAAAGTTGGAGGCGGAACAAGCTACGGCTGTA
TGTAGTGTACGGGCTGTGTGTTTGCAACCCCCCCCCCGTATCCAAGCGGG
TTCTTCTGTATCAGGTGGAGGATAAGAAATTTAGTTCGCTTTTCGCCCGA
CGTCTCGAGAACCTGCTTGCACTACATTAACTACAGTACTGGTAGGTAGC
TTGGACAAAGTTTTGGGCTTGGGAAAGATGACGGCCGGGCCTCATTTGAC
GCCGATCTTGGCGGTCGTGGGGGGAGGGGCAGAAGAAATCCGCTTACATG
CAGTACTTCGTCTTTAGAAGTAGTCGTTGATCTCGATGTCTTGTCGTCGG
CGATCCCTCGTATTTCGGATAGTCTAGATTTAGGTTTCTGCCTGCAGCAC
GCAGCACGAGGAGAGCCGCCAAATATGGGTAGCAGGGAGGAGGGGGGGCG
TATATTGCTTTTGTTCTCTTTGTTGCTTCTTTGCCGTATCGTGGTCTTGT
AACCATTGATCACTGGGCCACGCGGAGCGCCGTTCCTACTCGTATTTATC
CGGTATGGTCATCATCTCCCCCCATCTTATCCCCTTTTTTAGCTCCTACT
TTTGCAAGTTTCCTAATTCATTGATTTCCAAAAACGGCCTTACTTACTCC
AAGGCATTCGAAACTTTCCATATTTTGGAAGCGACGTACATAGACTGTAA
GAGCTCTCGCTTCCAAGAAAATTTAACCGAAAAGGGGACATTTTTGAATT
TTATACGGGTCTCATGAGGCACCGCCAGTAAATTTATTTCGGGCAAGGGA
GGGGGGAGGGGGCTTACAGCTTCGTTGTTTTGTCG
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig927:5952..12486-

>mRNA_S-firma_M_contig927.20216.1 ID=mRNA_S-firma_M_contig927.20216.1|Name=mRNA_S-firma_M_contig927.20216.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=3564bp|location=Sequence derived from alignment at S-firma_M_contig927:5952..12486- (Sphaerotrichia firma Sfir_13m male)
ATGCCGAGCCGAGGAGTAATAACAGCGGCGAGCTTCGCGCTCGTGTGGCT
GCCGCAAGCCTACGCCGTCTCCACCGCCGGACACCATGGTGACACGCATT
GCGAACGACTGCATACGCGCAAGATCCAACACTCTGACGCCCACTGCCTC
GGTGGGAACGAGGGGATGGGCAGGCCTCATTTCTGCTCAGCGATGCCGAG
CCGAGGAGTAATAACAGCGGCGAGCTTCGCGCTCGTGTGGCTGCCGCAAG
CCTACGCCGTCTCCACCGCCGGACACCATGGTGACACGCATTGCGAACGA
CTGCATACGCGCAAGATCCAACACTCTGACGCCCACTGCCTCGGTGGGAA
CGAGGGGATGGGCAGGCCTCATTTCTGCTCAGCGGTGGTCGCCTTTGACC
TCCCGCAAGGGTTCTACGCGCACAACGCCCGCGTAACGACCAAGTCCGCG
GAGCGTGGGCTCAAGGGGGCCGCCGCGGAAAACTTCGGAATTGGCCTGAA
TGTCGTACACAGCCAGGGCCCAGCTAGTGACGGGCATGTTGTTGGCCCCG
TTGGCCGCTTGCCATCGAAGCTATCGGAGGTGGTCGCCTTTGACCTCCCG
CAAGGGTTCTACGCGCACAACGCCCGCGTAACGACCAAGTCCGCGGAGCG
TGGGCTCAAGGGGGCCGCCGCGGAAAACTTCGGAATTGGCCTGAATGTCG
TACACAGCCAGGGCCCAGCTAGTGACGGGCATGTTGTTGGCCCCGTTGGC
CGCTTGCCATCGAAGCTATCGGAGGTTGATGGCACTGGCAACGGCAATGG
CATTGTCTACTCGATCGCCACTCGCGTGGTGGACCAGTACCCTGGACTTA
GCAGCAAACTACAGGTGCAGCTGCGCTACGGCGACACGGTTGAGGACATG
CTCGAGAACTTGCCCGACCCTGCCGATGCGCCGGGATGGCTCTCGACGCC
GGCAAGCCAAGAGATCCACCAAGGGGGGCGCGATATCATGCTGGATGTTG
ATGGCACTGGCAACGGCAATGGCATTGTCTACTCGATCGCCACTCGCGTG
GTGGACCAGTACCCTGGACTTAGCAGCAAACTACAGGTGCAGCTGCGCTA
CGGCGACACGGTTGAGGACATGCTCGAGAACTTGCCCGACCCTGCCGATG
CGCCGGGATGGCTCTCGACGCCGGCAAGCCAAGAGATCCACCAAGGGGGG
CGCGATATCATGCTGGATGTCATGTTCTGCTCACCCCCAAACGACCACCG
CGCGGAAGTTCTCGGCTTCCATCTCGAATCGTCTCCCCTCCAGCACCGCC
ATGGCGTCTTGCCGCGACGGGCATCTGGCCCGACCGCGCACACTAGAGGC
CATATCGAACCGATCACCTTGGCGAGCGGCCGCAAGAGGATGCTGGTCAG
CGAGCAAGCAGGCAGCAGCAGCAGAGACGAGAGGGCCCAGAAAGACCAGG
GCGCGGTTGCTCTCAGGGGAGGAGCGCGCGACCTAGCCGCAGCGTCCTCT
GGTGCCGACAACGTCGAAGTCGAGGTGGTGGACACTCTGGCCGATGCGGG
TTCGTGTGACCCGTACGACGGCGGGGACGAGTGGTGCGACTCGGCAATTT
CTTCTGCCGAGCAGAGGGCGTTGAACATTCAGGGGACAAACATATACTGC
AGGTCATGTTCTGCTCACCCCCAAACGACCACCGCGCGGAAGTTCTCGGC
TTCCATCTCGAATCGTCTCCCCTCCAGCACCGCCATGGCGTCTTGCCGCG
ACGGGCATCTGGCCCGACCGCGCACACTAGAGGCCATATCGAACCGATCA
CCTTGGCGAGCGGCCGCAAGAGGATGCTGGTCAGCGAGCAAGCAGGCAGC
AGCAGCAGAGACGAGAGGGCCCAGAAAGACCAGGGCGCGGTTGCTCTCAG
GGGAGGAGCGCGCGACCTAGCCGCAGCGTCCTCTGGTGCCGACAACGTCG
AAGTCGAGGTGGTGGACACTCTGGCCGATGCGGGTTCGTGTGACCCGTAC
GACGGCGGGGACGAGTGGTGCGACTCGGCAATTTCTTCTGCCGAGCAGAG
GGCGTTGAACATTCAGGGGACAAACATATACTGCAGCCGCGAGTGCGTCG
ACCACGGTGCCCTGTGGTGCAACATCTTCGGAAAAAAGAACTGCCGCATG
TGCAGCGACGACTGTGACGCGTACTGCGAGGGGAAGACGAACTGCAGGTG
CCACCCTTGCCCCGTGTCAGGCGCTACGGAGACGTGGGCGTGCACCCTTG
GCAAGCCAATGGCTTGCTACGATCAGCCGCGAGTGCGTCGACCACGGTGC
CCTGTGGTGCAACATCTTCGGAAAAAAGAACTGCCGCATGTGCAGCGACG
ACTGTGACGCGTACTGCGAGGGGAAGACGAACTGCAGGTGCCACCCTTGC
CCCGTGTCAGGCGCTACGGAGACGTGGGCGTGCACCCTTGGCAAGCCAAT
GGCTTGCTACGATCAGATCTCAGAGACCGACTACAAGTCCTTGGTGATCA
GTCGGCAGAGAATGCAGTGTGCGTATTCGTGCCTCAGGCAGGGGGGTTTC
TGGTGCCAAGCCTTCGGGATCGACGGATCTCAGAGACCGACTACAAGTCC
TTGGTGATCAGTCGGCAGAGAATGCAGTGTGCGTATTCGTGCCTCAGGCA
GGGGGGTTTCTGGTGCCAAGCCTTCGGGATCGACGGATGCCGCTTCTGCT
CGCTGGACTGCGACGACTACTGCTCGTCCAACGGGACGATATTCGGCGAA
GATTGCGACTGTATCCAGTGCCCCGATGACCTGGAGGACCCGCCCTTCGA
GATGCCGAGCGAGACGGACGAAGAGTACCAGTCGTGCGGGGACGTGGACG
ACGGAGACGCCTTCTGCTTGGAACAGATGCCGCTTCTGCTCGCTGGACTG
CGACGACTACTGCTCGTCCAACGGGACGATATTCGGCGAAGATTGCGACT
GTATCCAGTGCCCCGATGACCTGGAGGACCCGCCCTTCGAGATGCCGAGC
GAGACGGACGAAGAGTACCAGTCGTGCGGGGACGTGGACGACGGAGACGC
CTTCTGCTTGGAACAGGTGGCCGAAAAAACGCGTGTGGCACTAGAGACGC
AAGGAATGGGTCTCGAGTGCCACGAGGAATGCTACCCCGGAGTGGCGTGG
CCTGTCTGGTGCTTTGCCGAAGAGGTGGCCGAAAAAACGCGTGTGGCACT
AGAGACGCAAGGAATGGGTCTCGAGTGCCACGAGGAATGCTACCCCGGAG
TGGCGTGGCCTGTCTGGTGCTTTGCCGAAGAGACGGTCGGCTGCCGCTAT
TGTAAGGAGAGCTGTGACGAGTATTGCGGCGAGGGGGTGCCTGAGTGCAA
CTCGTGCTACACCTGCGAGGGCAGCTACAGCAGCTACAGTGGCAGCTACA
ACTTCCAAGACGGCGCTCCGTAGACGGTCGGCTGCCGCTATTGTAAGGAG
AGCTGTGACGAGTATTGCGGCGAGGGGGTGCCTGAGTGCAACTCGTGCTA
CACCTGCGAGGGCAGCTACAGCAGCTACAGTGGCAGCTACAACTTCCAAG
ACGGCGCTCCGTAG
back to top