prot_S-firma_M_contig927.20216.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig927.20216.1
Unique Nameprot_S-firma_M_contig927.20216.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length594
Homology
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BLAST of mRNA_S-firma_M_contig927.20216.1 vs. uniprot
Match: A0A6H5JD92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD92_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.180e-13
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 0 
Query:  390 PVSGATETWACTLGKPMACYDQISETDYKSLVISRQR-MQCAYSCLRQGGFWCQAFGIDGCRFCSLDCDDYCSSNGTIFGEDCDCIQC 476
            P SG T T  CT G    CYDQ+ E   K L++ R R + C  SCL  GG WC A G+ GCRFC+  CD++C+  G    +DC+CI+C
Sbjct: 1266 PTSGVTFT-ECTPGDSDTCYDQL-EPSMKGLLVERSRGLTCEESCLIDGGLWCDALGLSGCRFCATSCDNFCTEQG--LPDDCECIEC 1349
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig927.20216.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JD92_9PHAE1.180e-1346.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..593
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.768

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig927contigS-firma_M_contig927:6895..12417 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig927.20216.1mRNA_S-firma_M_contig927.20216.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig927 5952..12486 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig927.20216.1 ID=prot_S-firma_M_contig927.20216.1|Name=mRNA_S-firma_M_contig927.20216.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=594bp
MPSRGVITAASFALVWLPQAYAVSTAGHHGDTHCERLHTRKIQHSDAHCL
GGNEGMGRPHFCSAVVAFDLPQGFYAHNARVTTKSAERGLKGAAAENFGI
GLNVVHSQGPASDGHVVGPVGRLPSKLSEVDGTGNGNGIVYSIATRVVDQ
YPGLSSKLQVQLRYGDTVEDMLENLPDPADAPGWLSTPASQEIHQGGRDI
MLDVMFCSPPNDHRAEVLGFHLESSPLQHRHGVLPRRASGPTAHTRGHIE
PITLASGRKRMLVSEQAGSSSRDERAQKDQGAVALRGGARDLAAASSGAD
NVEVEVVDTLADAGSCDPYDGGDEWCDSAISSAEQRALNIQGTNIYCSRE
CVDHGALWCNIFGKKNCRMCSDDCDAYCEGKTNCRCHPCPVSGATETWAC
TLGKPMACYDQISETDYKSLVISRQRMQCAYSCLRQGGFWCQAFGIDGCR
FCSLDCDDYCSSNGTIFGEDCDCIQCPDDLEDPPFEMPSETDEEYQSCGD
VDDGDAFCLEQVAEKTRVALETQGMGLECHEECYPGVAWPVWCFAEETVG
CRYCKESCDEYCGEGVPECNSCYTCEGSYSSYSGSYNFQDGAP*
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