prot_S-firma_F_contig11100.1463.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig11100.1463.1
Unique Nameprot_S-firma_F_contig11100.1463.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length145
Homology
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: A0A812Y096_9DINO (RFC5 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Y096_9DINO)

HSP 1 Score: 139 bits (350), Expect = 1.940e-37
Identity = 74/135 (54.81%), Postives = 92/135 (68.15%), Query Frame = 0
Query:    5 GIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAFVHVRYM 139
            GI A+LRL+ GDMRRVLNILQAT+M+   + Q+ VY+ TGDPLPADIR    +++N  F EA +    + V KG +L DILT L TL+  + F    +AYL+  LADIEYRLAS   + LQMASLV AFV  R M
Sbjct:  195 GIKAVLRLAQGDMRRVLNILQATAMSSGTITQEAVYATTGDPLPADIRAAAGALLNKPFDEALQTLQDLAVHKGLSLADILTNLVTLVNAMGFPPAVRAYLLEKLADIEYRLASCMDENLQMASLVSAFVLARDM 329          
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: UPI00115E6E32 (replication factor C subunit 5 n=1 Tax=Manacus vitellinus TaxID=328815 RepID=UPI00115E6E32)

HSP 1 Score: 133 bits (334), Expect = 3.880e-37
Identity = 67/133 (50.38%), Postives = 93/133 (69.92%), Query Frame = 0
Query:    1 VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAF 133
            VT+DG+ A++ LS GDMRR LNILQ+TSMA+ +V ++ VY+CTG PL +DI  +L  M+N  FS A  K   +   KG AL+DILTEL   + R+ F    +  L+  +ADIEYRLA+ TS+K+Q++SL+ AF
Sbjct:    5 VTEDGLKALVTLSSGDMRRALNILQSTSMAFGKVTEENVYTCTGHPLKSDIANILDWMLNQDFSTAYRKITELKTLKGLALQDILTELHLFVHRVDFPPSIRIQLLIKMADIEYRLAAGTSEKIQLSSLIAAF 137          
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: A0A7S2W057_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W057_9STRA)

HSP 1 Score: 138 bits (348), Expect = 4.190e-37
Identity = 67/139 (48.20%), Postives = 102/139 (73.38%), Query Frame = 0
Query:    1 VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAFVHVRYM 139
            +++ GI+AIL LSGGDMRRVLN+LQ+T+M++  +++ +VY  +G PLP+DI T+  S+ ND F +A E   TMC +KGYA+ DILT+L+T++T +   +   A L+  +++IEYRLA  T +K+Q ASLVG F+  R++
Sbjct:  196 ISEGGIEAILSLSGGDMRRVLNLLQSTAMSFETIDETSVYLTSGAPLPSDIDTITNSLFNDDFVKAYENLITMCSTKGYAMADILTDLTTIVTTMKLPSGVLADLLDGMSNIEYRLAYGTDEKIQGASLVGVFIKARHL 334          
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: A0A7K4LIK8_9AVES (RFC5 factor (Fragment) n=1 Tax=Crypturellus undulatus TaxID=48396 RepID=A0A7K4LIK8_9AVES)

HSP 1 Score: 132 bits (332), Expect = 7.350e-37
Identity = 67/133 (50.38%), Postives = 92/133 (69.17%), Query Frame = 0
Query:    1 VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAF 133
            VT+DG+ A++ LS GDMRR LNILQ+TSMA+  V ++ VY+CTG PL  DI  +L  M+N  FS A  K   +   KG AL DILTE+  L+ R+ F    +  L++ +ADIEYRLA+ TS+K+Q++SL+ AF
Sbjct:    3 VTEDGMKALVTLSSGDMRRALNILQSTSMAFGTVTEENVYTCTGHPLKCDIANILDWMLNQDFSTAYRKISELKTLKGLALHDILTEIHLLVHRVDFPPSIRIQLLSKMADIEYRLAAGTSEKIQLSSLIAAF 135          
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: A0A672I8B0_SALFA (Rep_fac_C domain-containing protein n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A672I8B0_SALFA)

HSP 1 Score: 132 bits (331), Expect = 1.280e-36
Identity = 69/137 (50.36%), Postives = 95/137 (69.34%), Query Frame = 0
Query:    1 VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAFVHVR 137
            +T DG+ AI+ LS GDMRR LNILQ+TSMAY +V +DTVY+CTG PL +DI  +L   +N  F+ A ++   +   KG AL DILTE+  L+ R+ F    +  L+  LAD+E+RLAS TS+K+Q++S+V AF  VR
Sbjct:    9 ITPDGMKAIVTLSSGDMRRSLNILQSTSMAYEKVTEDTVYTCTGHPLRSDIANILDWCLNKDFTTAYKQILHLKTLKGLALNDILTEIHLLVHRVDFPPAVRISLLIKLADVEHRLASGTSEKIQLSSMVAAFQAVR 145          
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: A0A7K5BIQ4_9FURN (RFC5 factor (Fragment) n=1 Tax=Furnarius figulus TaxID=463165 RepID=A0A7K5BIQ4_9FURN)

HSP 1 Score: 132 bits (331), Expect = 4.950e-36
Identity = 66/133 (49.62%), Postives = 93/133 (69.92%), Query Frame = 0
Query:    1 VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAF 133
            VT+DG+ A++ LS GDMRR LNILQ+TSMA+ +V ++ VY+CTG PL +DI  +L  M+N  FS A  K   +   KG AL+DILTEL   + R+ F    +  L+  +ADIEYRLA+ T++K+Q++SL+ AF
Sbjct:   57 VTEDGMKALVTLSSGDMRRALNILQSTSMAFGKVTEENVYTCTGHPLKSDIANILDWMLNQDFSTAYHKIMELKTLKGLALQDILTELHLFVHRVDFPPSIRIQLLIKMADIEYRLAAGTNEKIQLSSLIAAF 189          
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: UPI000FCD494C (replication factor C subunit 5 n=1 Tax=Neopelma chrysocephalum TaxID=114329 RepID=UPI000FCD494C)

HSP 1 Score: 133 bits (334), Expect = 5.830e-36
Identity = 67/133 (50.38%), Postives = 93/133 (69.92%), Query Frame = 0
Query:    1 VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAF 133
            VT+DG+ A++ LS GDMRR LNILQ+TSMA+ +V ++ VY+CTG PL +DI  +L  M+N  FS A  K   +   KG AL+DILTEL   + R+ F    +  L+  +ADIEYRLA+ TS+K+Q++SL+ AF
Sbjct:  102 VTEDGLKALVTLSSGDMRRALNILQSTSMAFGKVTEENVYTCTGHPLKSDIANILDWMLNQDFSTAYRKITELKTLKGLALQDILTELHLFVHRVDFPPSIRIQLLIKMADIEYRLAAGTSEKIQLSSLIAAF 234          
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: UPI001B7E8105 (replication factor C subunit 5-like n=3 Tax=Acipenseroidei TaxID=186622 RepID=UPI001B7E8105)

HSP 1 Score: 135 bits (340), Expect = 5.920e-36
Identity = 70/139 (50.36%), Postives = 95/139 (68.35%), Query Frame = 0
Query:    1 VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAFVHVRYM 139
            VT DG+ AI+ LS GDMRR LNILQ+TSMAY  V++DTVY+CTG PL ADI  +L  M+N  FS A      +   KG AL D+LTE+  L+ R+ F    + +L+  +A+IE+RLAS TS+K+Q++S++ AF   R M
Sbjct:  191 VTPDGMKAIVTLSNGDMRRSLNILQSTSMAYGTVSEDTVYTCTGHPLKADIANILDWMLNQDFSTAYNNIMELKTLKGLALHDVLTEIHLLVHRVDFPASVRIHLLIKMANIEHRLASGTSEKIQLSSMIAAFQVARDM 329          
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: UPI000FD66B6F (replication factor C subunit 5 n=1 Tax=Corapipo altera TaxID=415028 RepID=UPI000FD66B6F)

HSP 1 Score: 133 bits (334), Expect = 7.510e-36
Identity = 67/133 (50.38%), Postives = 93/133 (69.92%), Query Frame = 0
Query:    1 VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAF 133
            VT+DG+ A++ LS GDMRR LNILQ+TSMA+ +V ++ VY+CTG PL +DI  +L  M+N  FS A  K   +   KG AL+DILTEL   + R+ F    +  L+  +ADIEYRLA+ TS+K+Q++SL+ AF
Sbjct:  112 VTEDGLKALVTLSSGDMRRALNILQSTSMAFGKVTEENVYTCTGHPLKSDIANILDWMLNQDFSTAYRKITELKTLKGLALQDILTELHLFVHRVDFPPSIRIQLLIKMADIEYRLAAGTSEKIQLSSLIAAF 244          
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: A0A3B3HT69_ORYLA (Replication factor C subunit 5 n=31 Tax=Clupeocephala TaxID=186625 RepID=A0A3B3HT69_ORYLA)

HSP 1 Score: 135 bits (339), Expect = 8.500e-36
Identity = 68/137 (49.64%), Postives = 96/137 (70.07%), Query Frame = 0
Query:    1 VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAFVHVR 137
            +T+DG+ AI+ LS GDMRR LN+LQ+TSMAY +V +D+VY+CTG PL +DI  +L   +N  F+ A ++   +   KG AL DILTEL  L+ R+ F    +  L+  LAD+E+RLAS T +K+Q++S+VGAF  VR
Sbjct:  191 ITEDGMKAIVTLSSGDMRRSLNVLQSTSMAYGKVTEDSVYTCTGQPLRSDIANILDWCLNKDFTSAYKQILQLKTLKGLALHDILTELHLLVHRVDFPPATRMTLLVKLADVEHRLASGTDEKIQLSSMVGAFQEVR 327          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812Y096_9DINO1.940e-3754.81RFC5 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
UPI00115E6E323.880e-3750.38replication factor C subunit 5 n=1 Tax=Manacus vit... [more]
A0A7S2W057_9STRA4.190e-3748.20Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7K4LIK8_9AVES7.350e-3750.38RFC5 factor (Fragment) n=1 Tax=Crypturellus undula... [more]
A0A672I8B0_SALFA1.280e-3650.36Rep_fac_C domain-containing protein n=2 Tax=Percom... [more]
A0A7K5BIQ4_9FURN4.950e-3649.62RFC5 factor (Fragment) n=1 Tax=Furnarius figulus T... [more]
UPI000FCD494C5.830e-3650.38replication factor C subunit 5 n=1 Tax=Neopelma ch... [more]
UPI001B7E81055.920e-3650.36replication factor C subunit 5-like n=3 Tax=Acipen... [more]
UPI000FD66B6F7.510e-3650.38replication factor C subunit 5 n=1 Tax=Corapipo al... [more]
A0A3B3HT69_ORYLA8.500e-3649.64Replication factor C subunit 5 n=31 Tax=Clupeoceph... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.272.10coord: 46..141
e-value: 1.2E-24
score: 88.2
NoneNo IPR availableGENE3D1.10.8.60coord: 1..44
e-value: 7.6E-16
score: 59.2
NoneNo IPR availablePANTHERPTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITcoord: 1..138
NoneNo IPR availablePANTHERPTHR11669:SF9REPLICATION FACTOR C SUBUNIT 5coord: 1..138
IPR013748Replication factor C, C-terminalPFAMPF08542Rep_fac_Ccoord: 46..131
e-value: 2.1E-16
score: 60.1
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalSUPERFAMILY48019post-AAA+ oligomerization domain-likecoord: 46..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11100contigS-firma_F_contig11100:1321..1799 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11100.1463.1mRNA_S-firma_F_contig11100.1463.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig11100 1321..1799 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig11100.1463.1 ID=prot_S-firma_F_contig11100.1463.1|Name=mRNA_S-firma_F_contig11100.1463.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=145bp
VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPAD
IRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTE
GKAYLMATLADIEYRLASATSDKLQMASLVGAFVHVRYMARNRS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008921DNA_pol3_clamp-load_cplx_C
IPR013748Rep_factorC_C