mRNA_S-firma_F_contig11100.1463.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: A0A812Y096_9DINO (RFC5 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Y096_9DINO) HSP 1 Score: 139 bits (350), Expect = 1.940e-37 Identity = 74/135 (54.81%), Postives = 92/135 (68.15%), Query Frame = 1
Query: 13 GIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAFVHVRYM 417
GI A+LRL+ GDMRRVLNILQAT+M+ + Q+ VY+ TGDPLPADIR +++N F EA + + V KG +L DILT L TL+ + F +AYL+ LADIEYRLAS + LQMASLV AFV R M
Sbjct: 195 GIKAVLRLAQGDMRRVLNILQATAMSSGTITQEAVYATTGDPLPADIRAAAGALLNKPFDEALQTLQDLAVHKGLSLADILTNLVTLVNAMGFPPAVRAYLLEKLADIEYRLASCMDENLQMASLVSAFVLARDM 329
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: UPI00115E6E32 (replication factor C subunit 5 n=1 Tax=Manacus vitellinus TaxID=328815 RepID=UPI00115E6E32) HSP 1 Score: 133 bits (334), Expect = 3.880e-37 Identity = 67/133 (50.38%), Postives = 93/133 (69.92%), Query Frame = 1
Query: 1 VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAF 399
VT+DG+ A++ LS GDMRR LNILQ+TSMA+ +V ++ VY+CTG PL +DI +L M+N FS A K + KG AL+DILTEL + R+ F + L+ +ADIEYRLA+ TS+K+Q++SL+ AF
Sbjct: 5 VTEDGLKALVTLSSGDMRRALNILQSTSMAFGKVTEENVYTCTGHPLKSDIANILDWMLNQDFSTAYRKITELKTLKGLALQDILTELHLFVHRVDFPPSIRIQLLIKMADIEYRLAAGTSEKIQLSSLIAAF 137
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: A0A7S2W057_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W057_9STRA) HSP 1 Score: 138 bits (348), Expect = 4.190e-37 Identity = 67/139 (48.20%), Postives = 102/139 (73.38%), Query Frame = 1
Query: 1 VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAFVHVRYM 417
+++ GI+AIL LSGGDMRRVLN+LQ+T+M++ +++ +VY +G PLP+DI T+ S+ ND F +A E TMC +KGYA+ DILT+L+T++T + + A L+ +++IEYRLA T +K+Q ASLVG F+ R++
Sbjct: 196 ISEGGIEAILSLSGGDMRRVLNLLQSTAMSFETIDETSVYLTSGAPLPSDIDTITNSLFNDDFVKAYENLITMCSTKGYAMADILTDLTTIVTTMKLPSGVLADLLDGMSNIEYRLAYGTDEKIQGASLVGVFIKARHL 334
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: A0A7K4LIK8_9AVES (RFC5 factor (Fragment) n=1 Tax=Crypturellus undulatus TaxID=48396 RepID=A0A7K4LIK8_9AVES) HSP 1 Score: 132 bits (332), Expect = 7.350e-37 Identity = 67/133 (50.38%), Postives = 92/133 (69.17%), Query Frame = 1
Query: 1 VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAF 399
VT+DG+ A++ LS GDMRR LNILQ+TSMA+ V ++ VY+CTG PL DI +L M+N FS A K + KG AL DILTE+ L+ R+ F + L++ +ADIEYRLA+ TS+K+Q++SL+ AF
Sbjct: 3 VTEDGMKALVTLSSGDMRRALNILQSTSMAFGTVTEENVYTCTGHPLKCDIANILDWMLNQDFSTAYRKISELKTLKGLALHDILTEIHLLVHRVDFPPSIRIQLLSKMADIEYRLAAGTSEKIQLSSLIAAF 135
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: A0A672I8B0_SALFA (Rep_fac_C domain-containing protein n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A672I8B0_SALFA) HSP 1 Score: 132 bits (331), Expect = 1.280e-36 Identity = 69/137 (50.36%), Postives = 95/137 (69.34%), Query Frame = 1
Query: 1 VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAFVHVR 411
+T DG+ AI+ LS GDMRR LNILQ+TSMAY +V +DTVY+CTG PL +DI +L +N F+ A ++ + KG AL DILTE+ L+ R+ F + L+ LAD+E+RLAS TS+K+Q++S+V AF VR
Sbjct: 9 ITPDGMKAIVTLSSGDMRRSLNILQSTSMAYEKVTEDTVYTCTGHPLRSDIANILDWCLNKDFTTAYKQILHLKTLKGLALNDILTEIHLLVHRVDFPPAVRISLLIKLADVEHRLASGTSEKIQLSSMVAAFQAVR 145
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: A0A7K5BIQ4_9FURN (RFC5 factor (Fragment) n=1 Tax=Furnarius figulus TaxID=463165 RepID=A0A7K5BIQ4_9FURN) HSP 1 Score: 132 bits (331), Expect = 4.950e-36 Identity = 66/133 (49.62%), Postives = 93/133 (69.92%), Query Frame = 1
Query: 1 VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAF 399
VT+DG+ A++ LS GDMRR LNILQ+TSMA+ +V ++ VY+CTG PL +DI +L M+N FS A K + KG AL+DILTEL + R+ F + L+ +ADIEYRLA+ T++K+Q++SL+ AF
Sbjct: 57 VTEDGMKALVTLSSGDMRRALNILQSTSMAFGKVTEENVYTCTGHPLKSDIANILDWMLNQDFSTAYHKIMELKTLKGLALQDILTELHLFVHRVDFPPSIRIQLLIKMADIEYRLAAGTNEKIQLSSLIAAF 189
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: UPI000FCD494C (replication factor C subunit 5 n=1 Tax=Neopelma chrysocephalum TaxID=114329 RepID=UPI000FCD494C) HSP 1 Score: 133 bits (334), Expect = 5.830e-36 Identity = 67/133 (50.38%), Postives = 93/133 (69.92%), Query Frame = 1
Query: 1 VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAF 399
VT+DG+ A++ LS GDMRR LNILQ+TSMA+ +V ++ VY+CTG PL +DI +L M+N FS A K + KG AL+DILTEL + R+ F + L+ +ADIEYRLA+ TS+K+Q++SL+ AF
Sbjct: 102 VTEDGLKALVTLSSGDMRRALNILQSTSMAFGKVTEENVYTCTGHPLKSDIANILDWMLNQDFSTAYRKITELKTLKGLALQDILTELHLFVHRVDFPPSIRIQLLIKMADIEYRLAAGTSEKIQLSSLIAAF 234
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: UPI001B7E8105 (replication factor C subunit 5-like n=3 Tax=Acipenseroidei TaxID=186622 RepID=UPI001B7E8105) HSP 1 Score: 135 bits (340), Expect = 5.920e-36 Identity = 70/139 (50.36%), Postives = 95/139 (68.35%), Query Frame = 1
Query: 1 VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAFVHVRYM 417
VT DG+ AI+ LS GDMRR LNILQ+TSMAY V++DTVY+CTG PL ADI +L M+N FS A + KG AL D+LTE+ L+ R+ F + +L+ +A+IE+RLAS TS+K+Q++S++ AF R M
Sbjct: 191 VTPDGMKAIVTLSNGDMRRSLNILQSTSMAYGTVSEDTVYTCTGHPLKADIANILDWMLNQDFSTAYNNIMELKTLKGLALHDVLTEIHLLVHRVDFPASVRIHLLIKMANIEHRLASGTSEKIQLSSMIAAFQVARDM 329
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: UPI000FD66B6F (replication factor C subunit 5 n=1 Tax=Corapipo altera TaxID=415028 RepID=UPI000FD66B6F) HSP 1 Score: 133 bits (334), Expect = 7.510e-36 Identity = 67/133 (50.38%), Postives = 93/133 (69.92%), Query Frame = 1
Query: 1 VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAF 399
VT+DG+ A++ LS GDMRR LNILQ+TSMA+ +V ++ VY+CTG PL +DI +L M+N FS A K + KG AL+DILTEL + R+ F + L+ +ADIEYRLA+ TS+K+Q++SL+ AF
Sbjct: 112 VTEDGLKALVTLSSGDMRRALNILQSTSMAFGKVTEENVYTCTGHPLKSDIANILDWMLNQDFSTAYRKITELKTLKGLALQDILTELHLFVHRVDFPPSIRIQLLIKMADIEYRLAAGTSEKIQLSSLIAAF 244
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Match: A0A3B3HT69_ORYLA (Replication factor C subunit 5 n=31 Tax=Clupeocephala TaxID=186625 RepID=A0A3B3HT69_ORYLA) HSP 1 Score: 135 bits (339), Expect = 8.500e-36 Identity = 68/137 (49.64%), Postives = 96/137 (70.07%), Query Frame = 1
Query: 1 VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADIRTMLKSMMNDTFSEANEKCWTMCVSKGYALRDILTELSTLITRLAFSTEGKAYLMATLADIEYRLASATSDKLQMASLVGAFVHVR 411
+T+DG+ AI+ LS GDMRR LN+LQ+TSMAY +V +D+VY+CTG PL +DI +L +N F+ A ++ + KG AL DILTEL L+ R+ F + L+ LAD+E+RLAS T +K+Q++S+VGAF VR
Sbjct: 191 ITEDGMKAIVTLSSGDMRRSLNVLQSTSMAYGKVTEDSVYTCTGQPLRSDIANILDWCLNKDFTSAYKQILQLKTLKGLALHDILTELHLLVHRVDFPPATRMTLLVKLADVEHRLASGTDEKIQLSSMVGAFQEVR 327 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11100.1463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig11100.1463.1 >prot_S-firma_F_contig11100.1463.1 ID=prot_S-firma_F_contig11100.1463.1|Name=mRNA_S-firma_F_contig11100.1463.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=145bp VTKDGIDAILRLSGGDMRRVLNILQATSMAYSEVNQDTVYSCTGDPLPADback to top mRNA from alignment at S-firma_F_contig11100:1321..1799+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig11100.1463.1 ID=mRNA_S-firma_F_contig11100.1463.1|Name=mRNA_S-firma_F_contig11100.1463.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=479bp|location=Sequence derived from alignment at S-firma_F_contig11100:1321..1799+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig11100:1321..1799+ >mRNA_S-firma_F_contig11100.1463.1 ID=mRNA_S-firma_F_contig11100.1463.1|Name=mRNA_S-firma_F_contig11100.1463.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=870bp|location=Sequence derived from alignment at S-firma_F_contig11100:1321..1799+ (Sphaerotrichia firma ET2_F female)back to top |