prot_S-firma_F_contig1088.1167.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1088.1167.1
Unique Nameprot_S-firma_F_contig1088.1167.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length54
Homology
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: A0A2P5ANB0_PARAD (Ribosomal protein n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5ANB0_PARAD)

HSP 1 Score: 99.4 bits (246), Expect = 2.780e-26
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0
Query:    1 ARQPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 53
            A+ PSHKTFR K  L KKM+QNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 
Sbjct:   19 AKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71          
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: A0A199VEH0_ANACO (60S ribosomal protein L39 n=45 Tax=cellular organisms TaxID=131567 RepID=A0A199VEH0_ANACO)

HSP 1 Score: 98.2 bits (243), Expect = 4.790e-26
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 0
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 53
            PSHKTFR K+ L KKM+QNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLG 
Sbjct:    2 PSHKTFRIKMKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: F0YDV4_AURAN (Ribosomal protein L39 (Fragment) n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YDV4_AURAN)

HSP 1 Score: 98.2 bits (243), Expect = 4.790e-26
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0
Query:    3 QPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 53
            QPSHKTFRTK TL KKMKQNRPIP WIR+RTDN IR+NAKRRHWRRTKLGL
Sbjct:    1 QPSHKTFRTKRTLAKKMKQNRPIPQWIRMRTDNKIRWNAKRRHWRRTKLGL 51          
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: A0A835YZW6_9STRA (Ribosomal protein L39e n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.790e-26
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 53
            PSHKTFRTK TL  K+KQNRPIP+WIRLRTDNTIRYNAKRRHWRRTKLGL
Sbjct:    2 PSHKTFRTKRTLAVKLKQNRPIPNWIRLRTDNTIRYNAKRRHWRRTKLGL 51          
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: A0A565CAR9_9BRAS (Uncharacterized protein n=14 Tax=Mesangiospermae TaxID=1437183 RepID=A0A565CAR9_9BRAS)

HSP 1 Score: 98.2 bits (243), Expect = 5.020e-26
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0
Query:    2 RQPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 53
            +QPSHK+F  K  LGKKM+QNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 
Sbjct:    2 KQPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 53          
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: A0A0A0LYE1_CUCSA (Uncharacterized protein n=9 Tax=fabids TaxID=91835 RepID=A0A0A0LYE1_CUCSA)

HSP 1 Score: 97.8 bits (242), Expect = 6.800e-26
Identity = 44/50 (88.00%), Postives = 45/50 (90.00%), Query Frame = 0
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 53
            PSHKTFR K  L KKM+QNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 
Sbjct:    2 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: A0A8J5KIL5_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KIL5_ZINOF)

HSP 1 Score: 98.2 bits (243), Expect = 7.980e-26
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0
Query:    1 ARQPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 53
            A+ PSHKTF+ K  L KKM+QNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 
Sbjct:   19 AKMPSHKTFKIKQKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71          
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: A0A218W104_PUNGR (Uncharacterized protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218W104_PUNGR)

HSP 1 Score: 98.6 bits (244), Expect = 8.260e-26
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 0
Query:    3 QPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 53
            QPSHKTFR K  L KKM+QNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLG 
Sbjct:   35 QPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 85          
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: A0A2I0K803_PUNGR (Uncharacterized protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0K803_PUNGR)

HSP 1 Score: 98.6 bits (244), Expect = 8.730e-26
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 0
Query:    3 QPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 53
            QPSHKTFR K  L KKM+QNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLG 
Sbjct:   37 QPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 87          
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: A0A835J235_9ROSI (Uncharacterized protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835J235_9ROSI)

HSP 1 Score: 98.6 bits (244), Expect = 8.730e-26
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0
Query:    1 ARQPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 53
            A+ PSHKTFR K  L KKM+QNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLG 
Sbjct:   35 AKMPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 87          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P5ANB0_PARAD2.780e-2684.91Ribosomal protein n=2 Tax=Cannabaceae TaxID=3481 R... [more]
A0A199VEH0_ANACO4.790e-2686.0060S ribosomal protein L39 n=45 Tax=cellular organi... [more]
F0YDV4_AURAN4.790e-2688.24Ribosomal protein L39 (Fragment) n=2 Tax=Pelagomon... [more]
A0A835YZW6_9STRA4.790e-2690.00Ribosomal protein L39e n=1 Tax=Tribonema minus Tax... [more]
A0A565CAR9_9BRAS5.020e-2684.62Uncharacterized protein n=14 Tax=Mesangiospermae T... [more]
A0A0A0LYE1_CUCSA6.800e-2688.00Uncharacterized protein n=9 Tax=fabids TaxID=91835... [more]
A0A8J5KIL5_ZINOF7.980e-2683.02Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
A0A218W104_PUNGR8.260e-2686.27Uncharacterized protein n=1 Tax=Punica granatum Ta... [more]
A0A2I0K803_PUNGR8.730e-2686.27Uncharacterized protein n=1 Tax=Punica granatum Ta... [more]
A0A835J235_9ROSI8.730e-2683.02Uncharacterized protein n=1 Tax=Salix dunnii TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023626Ribosomal protein L39e domain superfamilyGENE3D1.10.1620.10coord: 3..53
e-value: 6.8E-31
score: 107.8
IPR023626Ribosomal protein L39e domain superfamilySUPERFAMILY48662Ribosomal protein L39ecoord: 5..52
IPR000077Ribosomal protein L39ePFAMPF00832Ribosomal_L39coord: 11..51
e-value: 5.8E-23
score: 80.3
IPR000077Ribosomal protein L39ePANTHERPTHR19970RIBOSOMAL PROTEIN L39Ecoord: 3..52
NoneNo IPR availablePANTHERPTHR19970:SF21coord: 3..52
NoneNo IPR availablePRODOMPD007914coord: 4..39
e-value: 3.0E-11
score: 158.0
IPR020083Ribosomal protein L39e, conserved sitePROSITEPS00051RIBOSOMAL_L39Ecoord: 32..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1088contigS-firma_F_contig1088:12176..13240 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1088.1167.1mRNA_S-firma_F_contig1088.1167.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1088 12176..13240 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1088.1167.1 ID=prot_S-firma_F_contig1088.1167.1|Name=mRNA_S-firma_F_contig1088.1167.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=54bp
ARQPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTK
LGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020083Ribosomal_L39_CS
IPR000077Ribosomal_L39
IPR023626Ribosomal_L39e_dom_sf