mRNA_S-firma_F_contig1088.1167.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1088.1167.1
Unique NamemRNA_S-firma_F_contig1088.1167.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: A0A2P5ANB0_PARAD (Ribosomal protein n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5ANB0_PARAD)

HSP 1 Score: 99.4 bits (246), Expect = 2.780e-26
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 ARQPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 159
            A+ PSHKTFR K  L KKM+QNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 
Sbjct:   19 AKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71
[Close]
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: A0A199VEH0_ANACO (60S ribosomal protein L39 n=45 Tax=cellular organisms TaxID=131567 RepID=A0A199VEH0_ANACO)

HSP 1 Score: 98.2 bits (243), Expect = 4.790e-26
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:   10 PSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 159
            PSHKTFR K+ L KKM+QNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLG 
Sbjct:    2 PSHKTFRIKMKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: F0YDV4_AURAN (Ribosomal protein L39 (Fragment) n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YDV4_AURAN)

HSP 1 Score: 98.2 bits (243), Expect = 4.790e-26
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    7 QPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 159
            QPSHKTFRTK TL KKMKQNRPIP WIR+RTDN IR+NAKRRHWRRTKLGL
Sbjct:    1 QPSHKTFRTKRTLAKKMKQNRPIPQWIRMRTDNKIRWNAKRRHWRRTKLGL 51
[Close]
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: A0A835YZW6_9STRA (Ribosomal protein L39e n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.790e-26
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:   10 PSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 159
            PSHKTFRTK TL  K+KQNRPIP+WIRLRTDNTIRYNAKRRHWRRTKLGL
Sbjct:    2 PSHKTFRTKRTLAVKLKQNRPIPNWIRLRTDNTIRYNAKRRHWRRTKLGL 51
[Close]
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: A0A565CAR9_9BRAS (Uncharacterized protein n=14 Tax=Mesangiospermae TaxID=1437183 RepID=A0A565CAR9_9BRAS)

HSP 1 Score: 98.2 bits (243), Expect = 5.020e-26
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    4 RQPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 159
            +QPSHK+F  K  LGKKM+QNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 
Sbjct:    2 KQPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 53
[Close]
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: A0A0A0LYE1_CUCSA (Uncharacterized protein n=9 Tax=fabids TaxID=91835 RepID=A0A0A0LYE1_CUCSA)

HSP 1 Score: 97.8 bits (242), Expect = 6.800e-26
Identity = 44/50 (88.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   10 PSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 159
            PSHKTFR K  L KKM+QNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 
Sbjct:    2 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: A0A8J5KIL5_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KIL5_ZINOF)

HSP 1 Score: 98.2 bits (243), Expect = 7.980e-26
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 ARQPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 159
            A+ PSHKTF+ K  L KKM+QNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 
Sbjct:   19 AKMPSHKTFKIKQKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71
[Close]
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: A0A218W104_PUNGR (Uncharacterized protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218W104_PUNGR)

HSP 1 Score: 98.6 bits (244), Expect = 8.260e-26
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    7 QPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 159
            QPSHKTFR K  L KKM+QNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLG 
Sbjct:   35 QPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 85
[Close]
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: A0A2I0K803_PUNGR (Uncharacterized protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0K803_PUNGR)

HSP 1 Score: 98.6 bits (244), Expect = 8.730e-26
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    7 QPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 159
            QPSHKTFR K  L KKM+QNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLG 
Sbjct:   37 QPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 87
[Close]
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Match: A0A835J235_9ROSI (Uncharacterized protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835J235_9ROSI)

HSP 1 Score: 98.6 bits (244), Expect = 8.730e-26
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 ARQPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGL 159
            A+ PSHKTFR K  L KKM+QNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLG 
Sbjct:   35 AKMPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 87
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1088.1167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P5ANB0_PARAD2.780e-2684.91Ribosomal protein n=2 Tax=Cannabaceae TaxID=3481 R... [more]
A0A199VEH0_ANACO4.790e-2686.0060S ribosomal protein L39 n=45 Tax=cellular organi... [more]
F0YDV4_AURAN4.790e-2688.24Ribosomal protein L39 (Fragment) n=2 Tax=Pelagomon... [more]
A0A835YZW6_9STRA4.790e-2690.00Ribosomal protein L39e n=1 Tax=Tribonema minus Tax... [more]
A0A565CAR9_9BRAS5.020e-2684.62Uncharacterized protein n=14 Tax=Mesangiospermae T... [more]
A0A0A0LYE1_CUCSA6.800e-2688.00Uncharacterized protein n=9 Tax=fabids TaxID=91835... [more]
A0A8J5KIL5_ZINOF7.980e-2683.02Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
A0A218W104_PUNGR8.260e-2686.27Uncharacterized protein n=1 Tax=Punica granatum Ta... [more]
A0A2I0K803_PUNGR8.730e-2686.27Uncharacterized protein n=1 Tax=Punica granatum Ta... [more]
A0A835J235_9ROSI8.730e-2683.02Uncharacterized protein n=1 Tax=Salix dunnii TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1088contigS-firma_F_contig1088:12176..13240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LSX1
Preferred nameRPL39
PFAMsRibosomal_L39
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01886,ko:K02924
KEGG ReactionR03652
KEGG Pathwayko00970,ko01100,ko03010,map00970,map01100,map03010
KEGG ModuleM00177,M00179,M00359,M00360
GOsGO:0000003,GO:0000184,GO:0000956,GO:0002181,GO:0002227,GO:0002251,GO:0002376,GO:0002385,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0007276,GO:0007283,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019730,GO:0019731,GO:0019953,GO:0022414,GO:0022625,GO:0022626,GO:0032501,GO:0032504,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042742,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044421,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045047,GO:0045087,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048232,GO:0048519,GO:0048609,GO:0050789,GO:0050830,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060255,GO:0061844,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue3.43e-30
EggNOG OGsCOG0008@1|root,KOG0002@2759|Eukaryota
EC6.1.1.18
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01007,ko03011,ko03016
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionRibosomal protein L39e domain
Ec32 orthologEc-26_001730.1
Exons2
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.6715353-CDS-S-firma_F_contig1088:12175..122241622815631.6715353-CDS-S-firma_F_contig1088:12175..12224Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 12176..12224 -
1696949466.7980564-CDS-S-firma_F_contig1088:12175..122241696949466.7980564-CDS-S-firma_F_contig1088:12175..12224Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 12176..12224 -
1622815631.684786-CDS-S-firma_F_contig1088:13127..132401622815631.684786-CDS-S-firma_F_contig1088:13127..13240Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 13128..13240 -
1696949466.8117297-CDS-S-firma_F_contig1088:13127..132401696949466.8117297-CDS-S-firma_F_contig1088:13127..13240Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 13128..13240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1088.1167.1prot_S-firma_F_contig1088.1167.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1088 12176..13240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1088.1167.1

>prot_S-firma_F_contig1088.1167.1 ID=prot_S-firma_F_contig1088.1167.1|Name=mRNA_S-firma_F_contig1088.1167.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=54bp
ARQPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNTIRYNAKRRHWRRTK
LGL*
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mRNA from alignment at S-firma_F_contig1088:12176..13240-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1088.1167.1 ID=mRNA_S-firma_F_contig1088.1167.1|Name=mRNA_S-firma_F_contig1088.1167.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1065bp|location=Sequence derived from alignment at S-firma_F_contig1088:12176..13240- (Sphaerotrichia firma ET2_F female)
GCGCGACAGCCTTCCCACAAGACCTTCCGCACCAAGGTGACCCTTGGCAA
GAAGATGAAGCAGAACAGGCCGATCCCCCACTGGATCCGTCTCCGCACGG
ACAACACCATCCGGTAAGAGAGCGACCGCGATGTCGGCGCCGATGCGGGG
GTGCCGGCGATAAAAAGAAAACTCCGGGTCAGAACGATGGTGTTTTTTCG
TTTTTTCCTTCCAACGGACAGCAGTACATATACTCTGCTAGGCCAACTCT
CTCGCCTCACGAGCAGGGCGCTTTAACGGAAGGCCAGTCAGTCGGCTGCG
GAGGTGCATTTTCGTGCCAGCGCCGCTCCGCCCGCCGAATGTCTACAGTG
GTGTTGGCAGACTCATGGGAGTGCGATTGCCGTGCGCCGGGGCTACCTGG
GCGCATGCGCTCGCGAGTCTTGCGGTTGTGCGTGGTCGCTGCATGGCGGT
GCTGTCGACTGCGTTGGCTGGCTGGTTGAGGGATGACAGGACCATCATTA
GCCCCTTCGTGGAAGAAGCCCGCAAACAATGGCGTTCCGTGGTCGAGGGT
AGAGAGAACTGGGTGGATAGGCAACCACGCGTGGCCATTTTTTGTTGTTG
AGGTGTTGTGTGGAAGGACCGGGCGTTTGGGGTCCCAGGCCGAGCGCCCT
GCCCGTAGTTGTGCAGCCCCTCTAGTATGGATGCTTGGTCTTGGGAACGC
GCATGGGTTTTTCGTTGATGGGTGCAGAAATAAACACGGGGCGGAGACGT
GGGTCGCGAAATCGAACCGAGCGCGTGTCAGTGGAACGGCAAGCAAACCT
GGACGCGCGCGCACCGACGGACGCTTGCTGTTTTTGCAGCTGCTGATGCT
GCAGCTCAAACAACGAGCGCATGAACTCAACAGCTGCTGACTGCCCAGCC
GAGCTTGTACTGTATTGCAGCTTTTTGTTTGCTGACAATCACGTCTTGTT
GCTGTTTTTTTGTCTCTTGGACTCTGCGACCGCGCTGCTGCTTCCGTCCA
CGGCCTCCTTGAACAGCTACAACGCCAAGCGCCGCCACTGGCGCCGCACG
AAGCTCGGCCTCTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig1088:12176..13240-

>mRNA_S-firma_F_contig1088.1167.1 ID=mRNA_S-firma_F_contig1088.1167.1|Name=mRNA_S-firma_F_contig1088.1167.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=324bp|location=Sequence derived from alignment at S-firma_F_contig1088:12176..13240- (Sphaerotrichia firma ET2_F female)
GCGCGACAGCCTTCCCACAAGACCTTCCGCACCAAGGTGACCCTTGGCAA
GAAGATGAAGCAGAACAGGCCGATCCCCCACTGGATCCGTCTCCGCACGG
ACAACACCATCCGGCGCGACAGCCTTCCCACAAGACCTTCCGCACCAAGG
TGACCCTTGGCAAGAAGATGAAGCAGAACAGGCCGATCCCCCACTGGATC
CGTCTCCGCACGGACAACACCATCCGCTACAACGCCAAGCGCCGCCACTG
GCGCCGCACGAAGCTCGGCCTCTAGCTACAACGCCAAGCGCCGCCACTGG
CGCCGCACGAAGCTCGGCCTCTAG
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