prot_S-firma_F_contig1062.848.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1062.848.1
Unique Nameprot_S-firma_F_contig1062.848.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length196
Homology
BLAST of mRNA_S-firma_F_contig1062.848.1 vs. uniprot
Match: A0A6H5KL39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL39_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.190e-13
Identity = 63/154 (40.91%), Postives = 78/154 (50.65%), Query Frame = 0
Query:    9 AVLLLLAAVDQASGFVSTKRNHR----RPIT--TVDVGLGVPA------TPMLERLTLSQHSSVSFESPAARAAAVDRWSKRVRPAASKWPSSGRGGRHDEARQVEAEVEAEVVQPRPGMATQLGGWSYARTVFSNLGKSKSNDGDGGDASSTD 150
            A  +LLA VDQ SGF+ST+R H      P T  +   G G+ +      +  ++ LTLS+ S   FES AARA        R   A  +   S RGG +              VQPRPGM TQLGGWSYARTV +NL K    +G+GG   S D
Sbjct:   10 AAAVLLATVDQTSGFISTRRRHHGLSSSPGTRHSYSGGDGLASGGAQLTSTTVDHLTLSRESPYPFESSAARAV-------RGLVATKRSKRSSRGGGN-----------GATVQPRPGMETQLGGWSYARTVLTNLSKGAGREGEGGTEESGD 145          
BLAST of mRNA_S-firma_F_contig1062.848.1 vs. uniprot
Match: D8LN57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN57_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.050e-10
Identity = 65/167 (38.92%), Postives = 81/167 (48.50%), Query Frame = 0
Query:    1 MLIMIR-GTAVLLLLAAVDQASGFVS-------------TKRNHRRPITTVDVGLGVPATPMLERLTLSQHSSVSFESPAARAAAVDRWSKRVRPAASKWPSSGRGGRHDEARQVEAEVEAEVVQPRPGMATQLGGWSYARTVFSNLGKSKSNDGDGGDASSTDSSG 153
            ML+++R   A   LLAAVDQASGFVS             T+ ++         G  + +T  ++ LTLS+ S   FES AAR         R   A  +   S RGG +              VQPRPGM TQLGGWSYARTV +NL K    +G+ G    TD SG
Sbjct:    1 MLMILRTAMAAAALLAAVDQASGFVSXXXXXXXXXXSPGTRHSYNGGDGLASGGAPLTST-TVDHLTLSRESPYPFESSAARTV-------RGLVATQRSKRSNRGGGN-----------GATVQPRPGMETQLGGWSYARTVLTNLSKGAGREGESG----TDESG 144          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1062.848.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KL39_9PHAE3.190e-1340.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN57_ECTSI1.050e-1038.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..196
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..17
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.826

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1062contigS-firma_F_contig1062:23210..25651 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1062.848.1mRNA_S-firma_F_contig1062.848.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1062 23015..25651 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1062.848.1 ID=prot_S-firma_F_contig1062.848.1|Name=mRNA_S-firma_F_contig1062.848.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=196bp
MLIMIRGTAVLLLLAAVDQASGFVSTKRNHRRPITTVDVGLGVPATPMLE
RLTLSQHSSVSFESPAARAAAVDRWSKRVRPAASKWPSSGRGGRHDEARQ
VEAEVEAEVVQPRPGMATQLGGWSYARTVFSNLGKSKSNDGDGGDASSTD
SSGAAHGAPASAAGGSGGGASGDDHSKSTHGAKASSKAGEGEKGQG
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