mRNA_S-firma_F_contig1062.848.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1062.848.1
Unique NamemRNA_S-firma_F_contig1062.848.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1062.848.1 vs. uniprot
Match: A0A6H5KL39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL39_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.840e-13
Identity = 66/163 (40.49%), Postives = 83/163 (50.92%), Query Frame = 1 
Query:  196 MLIMIRGT-AVLLLLAAVDQASGFVSTKRNHR----RPIT--TVDVGLGVPA------TPMLERLTLSQHSSVSFESPAARAAAVDRWSKRVRPAASKWPSSGRGGRHDEARQVEAEVEAEVVQPRPGMATQLGGWSYARTVFSNLGKSKSNDGDGGDASSTD 645
            ML+ +R   A  +LLA VDQ SGF+ST+R H      P T  +   G G+ +      +  ++ LTLS+ S   FES AARA        R   A  +   S RGG +              VQPRPGM TQLGGWSYARTV +NL K    +G+GG   S D
Sbjct:    1 MLMTLRAAMAAAVLLATVDQTSGFISTRRRHHGLSSSPGTRHSYSGGDGLASGGAQLTSTTVDHLTLSRESPYPFESSAARAV-------RGLVATKRSKRSSRGGGN-----------GATVQPRPGMETQLGGWSYARTVLTNLSKGAGREGEGGTEESGD 145
[Close]
BLAST of mRNA_S-firma_F_contig1062.848.1 vs. uniprot
Match: D8LN57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN57_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 5.460e-11
Identity = 65/167 (38.92%), Postives = 81/167 (48.50%), Query Frame = 1 
Query:  196 MLIMIR-GTAVLLLLAAVDQASGFVS-------------TKRNHRRPITTVDVGLGVPATPMLERLTLSQHSSVSFESPAARAAAVDRWSKRVRPAASKWPSSGRGGRHDEARQVEAEVEAEVVQPRPGMATQLGGWSYARTVFSNLGKSKSNDGDGGDASSTDSSG 654
            ML+++R   A   LLAAVDQASGFVS             T+ ++         G  + +T  ++ LTLS+ S   FES AAR         R   A  +   S RGG +              VQPRPGM TQLGGWSYARTV +NL K    +G+ G    TD SG
Sbjct:    1 MLMILRTAMAAAALLAAVDQASGFVSXXXXXXXXXXSPGTRHSYNGGDGLASGGAPLTST-TVDHLTLSRESPYPFESSAARTV-------RGLVATQRSKRSNRGGGN-----------GATVQPRPGMETQLGGWSYARTVLTNLSKGAGREGESG----TDESG 144
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1062.848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KL39_9PHAE1.840e-1340.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN57_ECTSI5.460e-1138.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1062contigS-firma_F_contig1062:23015..25651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LN57
PFAMsPUB,TPR_20,Thioredoxin
Max annot lvl2759|Eukaryota
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Evalue1.73e-11
EggNOG OGsCOG0526@1|root,KOG0910@2759|Eukaryota
Descriptionglycerol ether metabolic process
COG categoryO
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categorysignal peptide
Exons5
Model size783
Cds size588
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1062.848.1prot_S-firma_F_contig1062.848.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1062 23210..25651 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815601.227537-UTR-S-firma_F_contig1062:23014..232091622815601.227537-UTR-S-firma_F_contig1062:23014..23209Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1062 23015..23209 +
1696949445.722103-UTR-S-firma_F_contig1062:23014..232091696949445.722103-UTR-S-firma_F_contig1062:23014..23209Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1062 23015..23209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815601.2402573-CDS-S-firma_F_contig1062:23209..233041622815601.2402573-CDS-S-firma_F_contig1062:23209..23304Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1062 23210..23304 +
1696949445.734033-CDS-S-firma_F_contig1062:23209..233041696949445.734033-CDS-S-firma_F_contig1062:23209..23304Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1062 23210..23304 +
1622815601.2542493-CDS-S-firma_F_contig1062:23921..240171622815601.2542493-CDS-S-firma_F_contig1062:23921..24017Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1062 23922..24017 +
1696949445.7517023-CDS-S-firma_F_contig1062:23921..240171696949445.7517023-CDS-S-firma_F_contig1062:23921..24017Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1062 23922..24017 +
1622815601.2669983-CDS-S-firma_F_contig1062:24280..244321622815601.2669983-CDS-S-firma_F_contig1062:24280..24432Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1062 24281..24432 +
1696949445.7652311-CDS-S-firma_F_contig1062:24280..244321696949445.7652311-CDS-S-firma_F_contig1062:24280..24432Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1062 24281..24432 +
1622815601.2780843-CDS-S-firma_F_contig1062:24978..250831622815601.2780843-CDS-S-firma_F_contig1062:24978..25083Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1062 24979..25083 +
1696949445.7802746-CDS-S-firma_F_contig1062:24978..250831696949445.7802746-CDS-S-firma_F_contig1062:24978..25083Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1062 24979..25083 +
1622815601.2879837-CDS-S-firma_F_contig1062:25511..256511622815601.2879837-CDS-S-firma_F_contig1062:25511..25651Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1062 25512..25651 +
1696949445.7917113-CDS-S-firma_F_contig1062:25511..256511696949445.7917113-CDS-S-firma_F_contig1062:25511..25651Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1062 25512..25651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1062.848.1

>prot_S-firma_F_contig1062.848.1 ID=prot_S-firma_F_contig1062.848.1|Name=mRNA_S-firma_F_contig1062.848.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=196bp
MLIMIRGTAVLLLLAAVDQASGFVSTKRNHRRPITTVDVGLGVPATPMLE
RLTLSQHSSVSFESPAARAAAVDRWSKRVRPAASKWPSSGRGGRHDEARQ
VEAEVEAEVVQPRPGMATQLGGWSYARTVFSNLGKSKSNDGDGGDASSTD
SSGAAHGAPASAAGGSGGGASGDDHSKSTHGAKASSKAGEGEKGQG
back to top

mRNA from alignment at S-firma_F_contig1062:23015..25651+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1062.848.1 ID=mRNA_S-firma_F_contig1062.848.1|Name=mRNA_S-firma_F_contig1062.848.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2637bp|location=Sequence derived from alignment at S-firma_F_contig1062:23015..25651+ (Sphaerotrichia firma ET2_F female)
GAGAGCTCCTTGGCAGCAACTGAAGCGAGCGCCTTACTGAGAAGGAGTGG
CAGAAATCCTCCAGCGGGGAAGCGGGGAAAGCATTGCCTTTGCAGAAGAG
GCGCTCAGTTTGGCGGAAGACAACAGGTCTCGCGCCTGTGAGGGGACCAA
ACGTTCAACTGCAGCGGAAGAGGACACGTGTGGGGGCGCTGCTGCATGCT
CATCATGATCCGCGGGACGGCGGTGCTGCTGCTGCTTGCTGCAGTGGATC
AGGCGTCTGGCTTCGTCAGTACCAAGCGTAACCACCGCAGGTGTGTTTTT
GGCTAGGTTGCGGAATTGTTGAGTGCCAACACCGCGCATGGAAACGCAGC
TAACTGCGACATGTGTGAGGCTCGTATCATGCGAGCCAGCGCGCGCGCGG
GCATGGTTGTGTGCGGATGGCGCTACTGTTTTGCTGCTCCGCGCTTCTAC
AGAGGCGCACTTCAGAGTTTTTCTCTGTCGTTTATGCCCCCTGTAGTCTG
TTGAACATGCACGATTGCTCTATCTGCTCTGTCTGTGGACACACATGCAC
CCGTTATGTAGCAGCGGCAACACCGATAGAGACCCGCACGTTTACCTGCG
GCGCCAAATGCTGTTCTTGTAGCGTCACCAGGGAGCTACGTGCAGTGGGT
GCAGTAATGTTATGGTGCTGGGTACGATCTTGATGTGCTTGCTGAGCGCT
AACTGCTGCTGCCGCCTCCAGCGATGGATTGCCATTTTCATAACGTCTAG
CTGTCTAACGGTGTGTTGCTGCTGCTGAGACTCGAGACGAGACTCTCCCG
GCTCACGTTTACCACAGATACGCTGCTGCAACATGCTTTGCTGTGCCGCG
CTTGCTGACCGCTGCCTGCCGCCGCTGCCTCCACCTCCTACGCTGCCGTT
TTTGAAGGCCGATAACGACAGTCGATGTCGGCTTGGGAGTCCCTGCCACC
CCGATGCTCGAGCGCCTGACTCTCTCCCAGCATTCATCTGTCTCCTTCGA
GAGGTGGGTACGCGTGGCGACTGGCCCTGTTTTAGACGAGAGCTTCCACT
TCTCTACAACGCGCAAGGCATCGTCTATGTGCATAGCTCTGCCGTGTTCG
TGGCTAGAGACGTTTCCTGACAGCTCTTGGTGCTTCTTTCTTCGTAACCA
CGTATGGTGGTCAGGAGAGAGGCTTGTCGTCCCTAATGTGTACCATACTT
ATCTTTCGCACCCTGCTGCCACTGCACTGCCTGTGCGCTGCGCTCGCTGC
CGTGATTGCATTCCAGCCCCGCAGCACGGGCAGCAGCAGTGGATCGGTGG
TCGAAAAGAGTTAGACCTGCGGCCTCCAAGTGGCCAAGCTCTGGTCGTGG
GGGCAGGCATGATGAAGCACGCCAGGTGGAGGCGGAGGTAGAGGCGGAGG
TGGTGCAACCAAGACCAGGTACGGTACATACGTGTGTGTGTGTGTGTGTG
AATTCCGCTCTCTCGCTGTCTCTCTGTGTATGTGCCTTGAGTGTCGCTGG
TGGTAGCCTCGAATGTTTGCCTTACCCTTGGAAATTGCGTACATAGACTG
GACGACAACGCACCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACA
GCAGCGGAATAAAGCTAGGTCGCCCCGAAAAGCACGCACCACATCACCTA
CATTCTTGGTACATACTGATCGGCAGTAAGGCCAGTTGATTCTCTTTGAC
CTTATAAATAGACCTATATTAGTCCTACCCCTACGTACGCGCTGAACACG
ACAACCGCGCCGACGCTATAGTGCACGGCCAAAGGCCAGTCGCTTCTCCT
TTGCCCGATCCCTCTCCCTGCCTCTCCGTAACCTAACCGTATCCCTAACC
GTACTCCCCCCATCTGCAACACGTCGACATTGACATGCTCGTGTGATCCT
TCCGTTCATAACCCTAACCCTGACCCTATCATCCCCAACTCTAACCCTCG
CCCGCCCCGAGTAGGGATGGCGACGCAGCTGGGTGGTTGGAGCTACGCTC
GGACAGTGTTTTCGAACTTGGGCAAGTCTAAGTCCAACGATGGAGATGGA
GGAGATGCCAGCTCCACCGGTGAGAACTGGTACAGTATTTAACACGTAAC
CCCTTTCATGCCTTGAAAAGGGGGGTTGTTTTGGACGCGCGTCAGCGACT
TGTTGTCCTTTTCGCATTTGGTGCTTTATGTTTTGGTCGGCGTCATGGCT
CCCTCTCCCCTAGTGTTGTTTACCATTCGGAGCGATTCGACATTCCCGAA
CCGCGGTCATTCTCGACAACGTTCGGGACCTCGTAGTGTCGCCCTCTATA
CCCCCCCCCCCCCGCCTCCCCGTTTGGTGAACCGGCCCCTTTATCTTCCT
CCCTCCCCTGCATGAGTCCGTCGTGCTTGATCAAACGCTGTACTCACAAC
AGGTCTTTGCACGTTGGCCGTGCACATGCGACGACGTCAGCCCTCACCCG
CATGCACCCATGTTTCGACTTTTTTTTTGTTTGGTTGTGAGGAGTAGATT
CGAGTGGTGCTGCACACGGCGCACCGGCGTCCGCCGCCGGAGGGTCAGGC
GGCGGTGCCAGCGGCGACGACCACAGCAAATCCACCCACGGTGCCAAGGC
CTCATCTAAGGCCGGGGAGGGGGAGAAAGGCCAGGGG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1062:23015..25651+

>mRNA_S-firma_F_contig1062.848.1 ID=mRNA_S-firma_F_contig1062.848.1|Name=mRNA_S-firma_F_contig1062.848.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1176bp|location=Sequence derived from alignment at S-firma_F_contig1062:23015..25651+ (Sphaerotrichia firma ET2_F female)
ATGCTCATCATGATCCGCGGGACGGCGGTGCTGCTGCTGCTTGCTGCAGT
GGATCAGGCGTCTGGCTTCGTCAGTACCAAGCGTAACCACCGCAGATGCT
CATCATGATCCGCGGGACGGCGGTGCTGCTGCTGCTTGCTGCAGTGGATC
AGGCGTCTGGCTTCGTCAGTACCAAGCGTAACCACCGCAGGCCGATAACG
ACAGTCGATGTCGGCTTGGGAGTCCCTGCCACCCCGATGCTCGAGCGCCT
GACTCTCTCCCAGCATTCATCTGTCTCCTTCGAGAGGCCGATAACGACAG
TCGATGTCGGCTTGGGAGTCCCTGCCACCCCGATGCTCGAGCGCCTGACT
CTCTCCCAGCATTCATCTGTCTCCTTCGAGAGCCCCGCAGCACGGGCAGC
AGCAGTGGATCGGTGGTCGAAAAGAGTTAGACCTGCGGCCTCCAAGTGGC
CAAGCTCTGGTCGTGGGGGCAGGCATGATGAAGCACGCCAGGTGGAGGCG
GAGGTAGAGGCGGAGGTGGTGCAACCAAGACCAGCCCCGCAGCACGGGCA
GCAGCAGTGGATCGGTGGTCGAAAAGAGTTAGACCTGCGGCCTCCAAGTG
GCCAAGCTCTGGTCGTGGGGGCAGGCATGATGAAGCACGCCAGGTGGAGG
CGGAGGTAGAGGCGGAGGTGGTGCAACCAAGACCAGGGATGGCGACGCAG
CTGGGTGGTTGGAGCTACGCTCGGACAGTGTTTTCGAACTTGGGCAAGTC
TAAGTCCAACGATGGAGATGGAGGAGATGCCAGCTCCACCGGGATGGCGA
CGCAGCTGGGTGGTTGGAGCTACGCTCGGACAGTGTTTTCGAACTTGGGC
AAGTCTAAGTCCAACGATGGAGATGGAGGAGATGCCAGCTCCACCGATTC
GAGTGGTGCTGCACACGGCGCACCGGCGTCCGCCGCCGGAGGGTCAGGCG
GCGGTGCCAGCGGCGACGACCACAGCAAATCCACCCACGGTGCCAAGGCC
TCATCTAAGGCCGGGGAGGGGGAGAAAGGCCAGGGGATTCGAGTGGTGCT
GCACACGGCGCACCGGCGTCCGCCGCCGGAGGGTCAGGCGGCGGTGCCAG
CGGCGACGACCACAGCAAATCCACCCACGGTGCCAAGGCCTCATCTAAGG
CCGGGGAGGGGGAGAAAGGCCAGGGG
back to top