prot_S-firma_F_contig1031.457.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1031.457.1
Unique Nameprot_S-firma_F_contig1031.457.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length60
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1031.457.1 vs. uniprot
Match: D8LNH2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNH2_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 9.330e-23
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 0 
Query:    1 MIGVGGRSVKLPGALGVQENEVPLIYLMIAALMVLFGGWKIAAMIVFAYVITNQKGRAR 59
            MIGV GR+V +PGALGVQE +VP +YLMIAAL+VLFGGWK+AA+IVFAYV+ NQK R R
Sbjct:   82 MIGVQGRTVTIPGALGVQEQQVPFVYLMIAALVVLFGGWKVAALIVFAYVLINQKPRGR 140
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1031.457.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNH2_ECTSI9.330e-2374.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..23
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 24..51
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 52..59
NoneNo IPR availableTMHMMTMhelixcoord: 29..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1031contigS-firma_F_contig1031:2148..2680 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1031.457.1mRNA_S-firma_F_contig1031.457.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1031 1697..3689 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1031.457.1 ID=prot_S-firma_F_contig1031.457.1|Name=mRNA_S-firma_F_contig1031.457.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=60bp
MIGVGGRSVKLPGALGVQENEVPLIYLMIAALMVLFGGWKIAAMIVFAYV
ITNQKGRAR*
back to top