mRNA_S-firma_F_contig1031.457.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1031.457.1
Unique NamemRNA_S-firma_F_contig1031.457.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1031.457.1 vs. uniprot
Match: D8LNH2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNH2_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 4.860e-37
Identity = 80/141 (56.74%), Postives = 93/141 (65.96%), Query Frame = 1 
Query:    1 VVRIINGEIVSDNDPRVVGAQRRSSAGSGGGT-QGK-GYGRVASLLDPXXXXXXXXXXXXXXXXXXXXXXXXXXXPLDQLADMIGVGGRSVKLPGALGVQENEVPLIYLMIAALMVLFGGWKIAAMIVFAYVITNQKGRAR 417
            +VRIINGEIVSD+DPRV G QRR          QG+ GYG VASLLDP                           PLD+LA+MIGV GR+V +PGALGVQE +VP +YLMIAAL+VLFGGWK+AA+IVFAYV+ NQK R R
Sbjct:    1 MVRIINGEIVSDDDPRVAGPQRRGXXXXXXXXXQGRAGYGHVASLLDPPSTAEATGGGARGPAAGGRGAGASTG-PLDKLAEMIGVQGRTVTIPGALGVQEQQVPFVYLMIAALVVLFGGWKVAALIVFAYVLINQKPRGR 140
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BLAST of mRNA_S-firma_F_contig1031.457.1 vs. uniprot
Match: A0A836CLX7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX7_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.500e-10
Identity = 45/133 (33.83%), Postives = 62/133 (46.62%), Query Frame = 1 
Query:    4 VRIINGEIVSDNDPRVVGAQRRSSAGSGGGTQGKGYGRVASLLDPXXXXXXXXXXXXXXXXXXXXXXXXXXXPLDQLADMIGVGGRSVKLPGALGVQENEVPLIYLMIAALMVLFGGWKIAAMIVFAYVITNQ 402
            VRIINGEIV DNDPR+   QR  SA +   T   G+G       P                           PL +LADM+GV G+++ +P   GV   +V +I+L++ A + L  GWK  A     YV+  +
Sbjct:    1 VRIINGEIVQDNDPRL--RQRTQSAAT---TARGGFGAGDGAARPTPSAAAMAGGAAES-------------PLQRLADMLGVKGKTITIPAVFGVPSRDVEVIHLLLVAAVSLIFGWKALAFTAVLYVVQTK 115
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BLAST of mRNA_S-firma_F_contig1031.457.1 vs. uniprot
Match: K3X6E6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X6E6_GLOUD)

HSP 1 Score: 58.9 bits (141), Expect = 3.060e-7
Identity = 56/138 (40.58%), Postives = 75/138 (54.35%), Query Frame = 1 
Query:    1 VVRIINGEIVSDNDPRVVGAQRRSSAGSGGGTQGKGYGRVASLLDPXXXXXXXXXXXXXXXXXXXXXXXXXXXPLDQLADMIGVGGRSVKLPGALGVQENEVPLIYLMIAALMVLFGGWKIAAMIVFAYVITNQKGRA 414
            +V IINGEIV DNDPRV+  +  +SA     ++ +G     SL   XXXXXXXXXXXX               PL  LA M+G+ G +V +P  LG    +V  IYL +AAL +   GW+    I FA  +++Q+  A
Sbjct:    1 MVHIINGEIVQDNDPRVLARKPPASAADAASSR-RGVTGFGSLSXXXXXXXXXXXXXXQGVGLQTS-------PLQGLARMLGIEG-TVTIPAVLGFPPRQVEKIYLALAALAMFLFGWRALIFIAFAVFLSSQQPAA 129
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BLAST of mRNA_S-firma_F_contig1031.457.1 vs. uniprot
Match: A0A5D6Y2Z4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2Z4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.790e-7
Identity = 58/138 (42.03%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:    1 VVRIINGEIVSDNDPRVVGAQRRSSAGSGGGTQGKGYGRVASLLDPXXXXXXXXXXXXXXXXXXXXXXXXXXXPLDQLADMIGVGGRSVKLPGALGVQENEVPLIYLMIAALMVLFGGWKIAAMIVFAYVITNQKGRA 414
            +V IINGEIV DNDPRV+  ++  +  S       G   +      XXXXXXXXXXXXXXXXXXX        PL  LA  +G+ G +V +PG LG+   +V  +YL + AL + F GW+    + FA+ ++ Q+  A
Sbjct:    1 MVHIINGEIVPDNDPRVLARKQPQAQASASRRPVAGINTLGGSXXXXXXXXXXXXXXXXXXXXXXQAS-----PLQGLARALGIEG-AVTIPGVLGMPPRQVEKVYLALGALAIFFFGWRALVFLAFAFFLSTQQPAA 132
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BLAST of mRNA_S-firma_F_contig1031.457.1 vs. uniprot
Match: A0A7S2R4Y2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4Y2_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.520e-6
Identity = 61/147 (41.50%), Postives = 81/147 (55.10%), Query Frame = 1 
Query:    1 VVRIINGEIVSDNDPRVVGAQRRSSAGSGGGTQGKGYGRVASLLDPXXXXXXXXXXXXXXXXXXXXXXXXXXXP---------LDQLADMIGVGGRSVKLPGALGVQENEVPLIYLMIAALMVLFG-GWKIAAMIVFAYVITNQKGR 411
            +VRIINGEIV D+DPR+   + RS  G  GG  G     ++SL +           XXXXXXXXXXXXXXXXX          L +LA  IGV  ++VK+P   GV  ++VP+IY++I A + LF   W++       Y I N   +
Sbjct:    2 MVRIINGEIVQDDDPRL---RHRSQPGPAGG--GPRVATISSLHNSSSSSASRPQSXXXXXXXXXXXXXXXXXXXXXXAPPEFLQRLAASIGVADQAVKIPAMFGVPSSDVPMIYVVILAAVTLFTRSWRVPVFAAAFYFIANHSAQ 143
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BLAST of mRNA_S-firma_F_contig1031.457.1 vs. uniprot
Match: A0A7S2C2E5_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C2E5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.440e-5
Identity = 43/147 (29.25%), Postives = 61/147 (41.50%), Query Frame = 1 
Query:    1 VVRIINGEIVSDNDPRVVGAQRRSSA------------GSGGGTQGKGYGRVASLLDPXXXXXXXXXXXXXXXXXXXXXXXXXXXPLDQLADMIGVGGRSVKLPGALGVQENEVPLIYLMIAALM-VLFGGWKIAAMIVFAYVITNQ 402
            +V+IINGEIV D+DPR    ++R+SA            GSGG       G                                    + QLA  + + GR V +P   GV ++EV LIYL+I  ++ VL   W+I A+ V  Y +   
Sbjct:    6 MVKIINGEIVQDDDPRAQRLRQRASAAQRPIPTSVNFGGSGGRAHSSSRGGNGGFGGTPPSTPVASDPAQQNPLMKI---------VQQLAKFLNIEGRLVTIPAVFGVPQSEVELIYLIIIGVVSVLSKSWRIPAVAVVVYFVIKH 143
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1031.457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LNH2_ECTSI4.860e-3756.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLX7_9STRA1.500e-1033.83Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
K3X6E6_GLOUD3.060e-740.58Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6Y2Z4_9STRA3.790e-742.03Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S2R4Y2_9STRA2.520e-641.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2C2E5_9STRA4.440e-529.25Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1031contigS-firma_F_contig1031:1697..3689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size871
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1031.457.1prot_S-firma_F_contig1031.457.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1031 2148..2680 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.5641341-UTR-S-firma_F_contig1031:1696..21471622815562.5641341-UTR-S-firma_F_contig1031:1696..2147Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1031 1697..2147 -
1696949417.7295995-UTR-S-firma_F_contig1031:1696..21471696949417.7295995-UTR-S-firma_F_contig1031:1696..2147Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1031 1697..2147 -
1622815562.6024888-UTR-S-firma_F_contig1031:2680..27441622815562.6024888-UTR-S-firma_F_contig1031:2680..2744Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1031 2681..2744 -
1696949417.7568696-UTR-S-firma_F_contig1031:2680..27441696949417.7568696-UTR-S-firma_F_contig1031:2680..2744Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1031 2681..2744 -
1622815562.6180568-UTR-S-firma_F_contig1031:3513..36891622815562.6180568-UTR-S-firma_F_contig1031:3513..3689Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1031 3514..3689 -
1696949417.7650878-UTR-S-firma_F_contig1031:3513..36891696949417.7650878-UTR-S-firma_F_contig1031:3513..3689Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1031 3514..3689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.577591-CDS-S-firma_F_contig1031:2147..22281622815562.577591-CDS-S-firma_F_contig1031:2147..2228Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1031 2148..2228 -
1696949417.7418761-CDS-S-firma_F_contig1031:2147..22281696949417.7418761-CDS-S-firma_F_contig1031:2147..2228Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1031 2148..2228 -
1622815562.5899706-CDS-S-firma_F_contig1031:2581..26801622815562.5899706-CDS-S-firma_F_contig1031:2581..2680Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1031 2582..2680 -
1696949417.7488687-CDS-S-firma_F_contig1031:2581..26801696949417.7488687-CDS-S-firma_F_contig1031:2581..2680Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1031 2582..2680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1031.457.1

>prot_S-firma_F_contig1031.457.1 ID=prot_S-firma_F_contig1031.457.1|Name=mRNA_S-firma_F_contig1031.457.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=60bp
MIGVGGRSVKLPGALGVQENEVPLIYLMIAALMVLFGGWKIAAMIVFAYV
ITNQKGRAR*
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mRNA from alignment at S-firma_F_contig1031:1697..3689-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1031.457.1 ID=mRNA_S-firma_F_contig1031.457.1|Name=mRNA_S-firma_F_contig1031.457.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1993bp|location=Sequence derived from alignment at S-firma_F_contig1031:1697..3689- (Sphaerotrichia firma ET2_F female)
GTAGTGCGAATTATCAACGGGGAGATCGTGAGCGACAACGACCCTCGGGT
GGTGGGGGCACAGCGGCGGTCATCGGCCGGTAGCGGCGGAGGGACACAGG
GGAAGGGATACGGCCGCGTTGCTTCGCTCCTAGACCCACCGCCCTCATCA
ACAGCAGCAGGCGGTGGGAGTGCAAGGTGTGATGCGCGTCTCACGCCGGT
TAAGATTTGTAGCTCAAGTTTTGGGGGTAGTCTGCAGCAGTACATAGAAA
CCAAGAAGTCCGATTGTTGAGGACTGGCATCAAGACCACCTGCTGCTGTT
CTACCACCTCTCACACCCCGTGCAACTCACATGGTGTTCATGTTGCACGC
CCTGAGCATTTGTGCATTTGTACTTGTCAAGATGTCCTATGGTGTGTGTT
AGAAATATGTGGGCACGGCTTAATTGATATCTCGTGGCGGCAAATGTATC
AGTGATCCAGGCGGTGCCCTGCCGTGCTTGTTTTTTTCTTTTTTTTTTCT
TTTTTTTCTCTTTTTTTTTTTCTTTTTTTGGCCGCGAGGCCAACGCGAAA
GAGCATGATCAGCCTTGTACAGTACCGCAGGAAGGGGTCCACCCCCCCCC
TCCTGCGTTACCCCGGGTGGGTCGTCTAGCTAGTCGTAGTGGAGGATGGG
AGCCAGTGGGGCAAACGACAGAAGCACTATTGGGAGGGAAAAAAATAAAA
AAAATTAGGCATGAAGGTGCCACCACGACCCACCTCCATGCCTCACACGT
GGTGAACCACCCATTGCACCGCCGTGGTAGTTCGCGGGAAAAATAGCAAG
CATACCTCTCTCGCTCCTTGGCGCAACTTTTCCAAGGGTTTATGGGCGTA
CCGAGCGAGGGAGGCCTACACCCCTGTATGAAAAGTAGGAGCTCACATGT
TACCAACGTGTGCGGGTTCCGTAAACGAAACCTGCATGTAAGCAGCGGGC
AAGGAGCAGGAGGAAGCGGAGGCGGCGGCGGTGGCGGGCCTCTTGACCAG
CTGGCGGACATGATCGGGGTGGGCGGCCGTTCCGTGAAACTTCCGGGCGC
GCTGGGGGTCCAGGAGAACGAAGTGCCGCTCATCTACCTCATGATTGCTG
CGTTGATGGTAAGAAACTCGTTCCCGTCATTCTGCCGTTGCCGTCTTGTG
GGTTTTGTTCACAGCGCTTTCCCGTGCAATATAAACCTCACTTGTTGGGG
GGGTCATACAGACGAGGCAATCGGGACAAGCGTAGGTCTGTGTCCGTGTT
TGGCATGTAAGGATTGCGGGAGAGTGTTTGTCGCCGAGCAAGCCCCCCCC
CCCCCCGGCTGTGTGCACGGTCGATGTAGACCAGGTGTCCTCCGCATCGG
AATATAAAACGTTCAACCAATAGCTTACCAAGATGAGTGGCCGCCCTCCA
CACGCTCATGTCGCTTGCCTTTCGGTGATGTACACGCGTGCTCAACCAAC
ACCATTTCCAGGTCCTTTTTGGCGGCTGGAAGATTGCGGCGATGATCGTT
TTCGCCTACGTCATCACCAACCAAAAGGGTCGGGCCCGGTAGCGAAAGGC
TTAGTGATTTTCCGAGGCCGTACGCTTTGGATGGGTTTCTTTGGGTAGCG
TGAATTGTGAATTGTCATCTCATGGACGAATTACTGCTGTGTATGCGGGT
TGTGATGGCTCCCTAGACGGGGAAGCTGAGCTGCCTACAGACGGCAGGCG
TCGCTCCCCTCTTTCCTGGCCGACGATGCCGTGTGCGTTCATGAGTGTAT
CAGTGCTCTCGAAAGGCGCCTCCCAAACAAGCGGCGAGCGGCGGAGCAGT
CTCAGTCTCAGGGACTGTGGAGGGGAAGGGAGAGGTATCAGGGCAGGAGC
CGGAGCGTAACAACGATCCGCGCAGGATGCGGGTGCGAGGGGCTCGGTCG
CAAGTTGTCCCCGGCAGAGTTGGAGGCCGGCGACAAGGAGGAAGAGGCGG
AAAAGGGAGGTGGAACGAACATGAGGCTGGGGGTCAGCAGGGT
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Coding sequence (CDS) from alignment at S-firma_F_contig1031:1697..3689-

>mRNA_S-firma_F_contig1031.457.1 ID=mRNA_S-firma_F_contig1031.457.1|Name=mRNA_S-firma_F_contig1031.457.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=360bp|location=Sequence derived from alignment at S-firma_F_contig1031:1697..3689- (Sphaerotrichia firma ET2_F female)
ATGATCGGGGTGGGCGGCCGTTCCGTGAAACTTCCGGGCGCGCTGGGGGT
CCAGGAGAACGAAGTGCCGCTCATCTACCTCATGATTGCTGCGTTGATGA
TGATCGGGGTGGGCGGCCGTTCCGTGAAACTTCCGGGCGCGCTGGGGGTC
CAGGAGAACGAAGTGCCGCTCATCTACCTCATGATTGCTGCGTTGATGGT
CCTTTTTGGCGGCTGGAAGATTGCGGCGATGATCGTTTTCGCCTACGTCA
TCACCAACCAAAAGGGTCGGGCCCGGTAGGTCCTTTTTGGCGGCTGGAAG
ATTGCGGCGATGATCGTTTTCGCCTACGTCATCACCAACCAAAAGGGTCG
GGCCCGGTAG
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