prot_S-firma_F_contig103.442.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig103.442.1
Unique Nameprot_S-firma_F_contig103.442.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length820
Homology
BLAST of mRNA_S-firma_F_contig103.442.1 vs. uniprot
Match: A0A6H5KYV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYV0_9PHAE)

HSP 1 Score: 402 bits (1032), Expect = 8.610e-125
Identity = 311/635 (48.98%), Postives = 368/635 (57.95%), Query Frame = 0
Query:  188 EEDASVEQIQASIEELLGMQGLGSGSWNKD--GGVPAAVEREQRTLVREIKALGRRGRWGDVLEVIARARYQGTELNAIIYGCVFYSPCNTRRASEAL------------NELWRKIFMLAA------GECFSFWCREVFLMVSLLALSLKTTHAPGGVERIEVVCWADVRRSNVNQYCRSALAPEALAFFREMEEQGVTRDEVSYNAAIDACARGGLWERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVMRGTAAHEAEDDENDPDSELLEELLRLVDEGESETPSPFL----------VAEITAPKTDSSPGDGGATAAWTPAWSWPSSPPPPTPNARSYNACIAACRRGGKYGLARLFFLEMMSRGLKPDVWTFRSALLPHSQDRPAVTAEEWPAPMMPAAKQSESXXXXXXXXXXXXXXXXXXFAPPAWKLLPPQGPRSAPQPQRRSEAGVFWRQALLMLEEVDAEGLGPDPPCISLVLSECARAGRWEESRNLLEDLREASPPGSSYHPNISRYNSVLTLLRNAPARGRRGITAAAATAE-----DPADLDG-------------GGKRSGAEGWTNGHVSGFLSDMRAAGVTPDNDTYQCAIRCATDAAMSDIATA 774
            E++ S+E+IQASIEELLGMQGLGSGSWN +  GGVPAAVEREQRTLVREIKALGRRGRWGDVLEV+ARARYQGTELN+IIYGC   +   + R  E +            +E   K  ++A       G     + R       +   S        G +   V     +  + +    R     EALAFF EM ++G+ RDE +                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD MRG   + A+DD++D     L ++L L+ E   +TP              +A   +P T ++ G       +  A    S   PP P+ RSYN+CIAACRRGG+ GLA+LFF +M+SRGL+PDVWTF+SA+L   Q +P              A                       F+    +L P + P+ A  P         WR  L++LEEVD EGLGPDPPCI+L L+ECARAGRWEESRNLLEDLREASPPG S  P +SRYNSVL  LRNAPAR  R    A  T        PA  DG             GG+ SGAEGW  GHVSGFL DMRAAGVTPD DTYQCAIRCATDAA+ DIA A
Sbjct:  150 EDENSLEEIQASIEELLGMQGLGSGSWNNEPGGGVPAAVEREQRTLVREIKALGRRGRWGDVLEVVARARYQGTELNSIIYGCAMNAVGRSGRYKECMILLDWSTEDIEPDEYCYKAAIIACSAANQWGRALDLFRRFQRATDGVGGASPPAAAGAAGDKAKGVTPGTAIYNAVITACARGLFTEEALAFFLEMGDRGIRRDEGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAMRG---NNAQDDDHD-----LVQILLLLGEELPDTPXXXXXXXAEERQEPLASNHSPTTATAKGGSPDDVEFRVAVPSSSLSSPPAPDVRSYNSCIAACRRGGQSGLAKLFFHDMLSRGLRPDVWTFKSAVLDRLQAQPPTXXXXXXXXXXTKAGTRRDQEVSSRPD----------FSGGQERLPPSRAPQQARSP---------WRALLVLLEEVDGEGLGPDPPCINLALTECARAGRWEESRNLLEDLREASPPGGSLRPGVSRYNSVLRTLRNAPARKCRTTFGAPTTPPLGGEVTPAGGDGIRVDGDFVDLEAAGGRWSGAEGWVQGHVSGFLEDMRAAGVTPDRDTYQCAIRCATDAALLDIAKA 757          
BLAST of mRNA_S-firma_F_contig103.442.1 vs. uniprot
Match: D8LDQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ5_ECTSI)

HSP 1 Score: 387 bits (993), Expect = 4.710e-120
Identity = 314/640 (49.06%), Postives = 363/640 (56.72%), Query Frame = 0
Query:  188 EEDASVEQIQASIEELLGMQGLGSGSWNKD--GGVPAAVEREQRTLVREIKALGRRGRWGDVLEVIARARYQGTELNAIIYGCVFYSPCNTRRASEALNEL-WRKIFMLAAGECFS---FWCREVFLMVSLLALSLKTTHAPGGVERIEVVCWADVRRSNVNQYC--------------RSALAPEALAFFREMEEQGVTRDEVSYNAAIDACARGGLWERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVMRGTAAHEAEDDENDPDSELLE-------------ELLRLVDEGESETPSPFLVAEITAPKTDSSP-GDGGATAAWTPAWSWPSSPPPPTPNARSYNACIAACRRGGKYGLARLFFLEMMSRGLKPDVWTFRSALLPHSQDRPAVTAEEWPAPMMPAAKQSESXXXXXXXXXXXXXXXXXXFAPPAWKLLPPQGPRSAPQPQRRSEAGVFWRQALLMLEEVDAEGLGPDPPCISLVLSECARAGRWEESRNLLEDLREASPPGSSYHPNISRYNSVLTLLRNAPARGRRGITAAAATA------------------EDPADLDG-GGKRSGAEGWTNGHVSGFLSDMRAAGVTPDNDTYQCAIRCATDAAMSDIATA 774
            E++ S+E+IQASIEELLGMQGLGSGSWN +  GGVPAAVEREQRTLVREIKALGRRGRWGDVLEV+ARAR+QGTELN+IIYGC   +   + R  E +  L W    +     C+      C         L L  +   A  G+        A     N   +               R     EALAFF EM E+GV RDEV+                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   RG  A E      D D +L E                        + P     +  TA     SP G     AA +  +S      PP+P+ RSYN+CIAACRRGG+ GLARLFF +M+SRGL+PDVWTF+ A+L   Q +P         P          XX                F+    +L P + P+ A  P         WR  L++LE+VD EGLGPDPPCI+L L+ECARAGRWEESR+LLEDLREASPPG S  P +SRYNSVL  LRNAPAR RR  T  A TA                  E+  DL+  GG+ SGAEGW +GHVSGFL DMRAAGVTPD DTYQCAIRCATDAA+ DIA A
Sbjct:   28 EDENSLEEIQASIEELLGMQGLGSGSWNNEPGGGVPAAVEREQRTLVREIKALGRRGRWGDVLEVVARARHQGTELNSIIYGCAMNAVGRSGRYKECMILLEWSTEDIEPDEYCYKAAIIACSAANQWGRALDLFRRFQRATDGIGGASPPAAAGAAGDNAKGFAPGTAIYNAVITACARGLFTEEALAFFLEMGERGVRRDEVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGNDAQE------DDDHDLAEIXXXXXXXXXXXXXXXXXXXXXXXQEPLASNHSPTTATAKGGSPDGVEFRVAALSSLFS------PPSPDVRSYNSCIAACRRGGQSGLARLFFHDMLSRGLRPDVWTFKCAVLGRLQAQP---------PTPXXXXXXXXXXTKAGTRQDPEISSRPGFSGGQERLPPSRAPQQARSP---------WRALLVLLEDVDGEGLGPDPPCINLALTECARAGRWEESRSLLEDLREASPPGGSLLPGVSRYNSVLRTLRNAPARDRR-TTLGAPTAPPLGGEVTPAGGGGSRIDEEFVDLEAAGGRWSGAEGWADGHVSGFLEDMRAAGVTPDRDTYQCAIRCATDAALLDIAKA 636          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig103.442.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYV0_9PHAE8.610e-12548.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDQ5_ECTSI4.710e-12049.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 511..540
e-value: 0.0091
score: 16.2
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 358..417
e-value: 6.5E-10
score: 38.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 406..432
e-value: 1.6E-5
score: 22.8
coord: 511..544
e-value: 1.9E-6
score: 25.6
coord: 371..404
e-value: 2.2E-6
score: 25.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 404..434
score: 9.799
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 369..403
score: 12.101
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 334..368
score: 6.61
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 508..542
score: 10.523
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 227..261
score: 5.93
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 645..675
score: 7.629
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 227..466
e-value: 8.0E-31
score: 109.5
coord: 574..807
e-value: 1.5E-10
score: 43.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 505..558
e-value: 1.0E-7
score: 33.4
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 343..549

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig103contigS-firma_F_contig103:38344..43793 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig103.442.1mRNA_S-firma_F_contig103.442.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig103 38344..44372 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig103.442.1 ID=prot_S-firma_F_contig103.442.1|Name=mRNA_S-firma_F_contig103.442.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=820bp
MSLQSSCCNVMAFTVQPSFNAIFPVRCVQTNLRRRRRPLWTTTTPPPTTT
ATPTPAARGGPRGESDSPLTLLALAASKREQQDRSTGPRSSGEDDSPRPS
RRRSPLPGRGKKSGHSDVVGGAKKQPPLPRTPSSGAPPPKPQLPPAPAPR
QSSTPTGKLKKRPRIPVPPLQRAFGVGRGAGQGGGGREEDASVEQIQASI
EELLGMQGLGSGSWNKDGGVPAAVEREQRTLVREIKALGRRGRWGDVLEV
IARARYQGTELNAIIYGCVFYSPCNTRRASEALNELWRKIFMLAAGECFS
FWCREVFLMVSLLALSLKTTHAPGGVERIEVVCWADVRRSNVNQYCRSAL
APEALAFFREMEEQGVTRDEVSYNAAIDACARGGLWERALQLLSEMLTTR
LQPSIVTYNAALDACGREGRWEEAADLIDVMRGTAAHEAEDDENDPDSEL
LEELLRLVDEGESETPSPFLVAEITAPKTDSSPGDGGATAAWTPAWSWPS
SPPPPTPNARSYNACIAACRRGGKYGLARLFFLEMMSRGLKPDVWTFRSA
LLPHSQDRPAVTAEEWPAPMMPAAKQSESSPSSSSSSSSSSSSSSSSFAP
PAWKLLPPQGPRSAPQPQRRSEAGVFWRQALLMLEEVDAEGLGPDPPCIS
LVLSECARAGRWEESRNLLEDLREASPPGSSYHPNISRYNSVLTLLRNAP
ARGRRGITAAAATAEDPADLDGGGKRSGAEGWTNGHVSGFLSDMRAAGVT
PDNDTYQCAIRCATDAAMSDIATAAAEAEAEAVELAVVVEGEAAGKGGGG
GGGASKSAGGDLVRAGGEQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat