mRNA_S-firma_F_contig103.442.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig103.442.1 vs. uniprot
Match: A0A6H5KYV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYV0_9PHAE) HSP 1 Score: 402 bits (1032), Expect = 9.880e-123 Identity = 311/635 (48.98%), Postives = 368/635 (57.95%), Query Frame = 1
Query: 562 EEDASVEQIQASIEELLGMQGLGSGSWNKD--GGVPAAVEREQRTLVREIKALGRRGRWGDVLEVIARARYQGTELNAIIYGCVFYSPCNTRRASEAL------------NELWRKIFMLAA------GECFSFWCREVFLMVSLLALSLKTTHAPGGVERIEVVCWADVRRSNVNQYCRSALAPEALAFFREMEEQGVTRDEVSYNAAIDACARGGLWERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVMRGTAAHEAEDDENDPDSELLEELLRLVDEGESETPSPFL----------VAEITAPKTDSSPGDGGATAAWTPAWSWPSSPPPPTPNARSYNACIAACRRGGKYGLARLFFLEMMSRGLKPDVWTFRSALLPHSQDRPAVTAEEWPAPMMPAAKQSESXXXXXXXXXXXXXXXXXXFAPPAWKLLPPQGPRSAPQPQRRSEAGVFWRQALLMLEEVDAEGLGPDPPCISLVLSECARAGRWEESRNLLEDLREASPPGSSYHPNISRYNSVLTLLRNAPARGRRGITAAAATAE-----DPADLDG-------------GGKRSGAEGWTNGHVSGFLSDMRAAGVTPDNDTYQCAIRCATDAAMSDIATA 2322
E++ S+E+IQASIEELLGMQGLGSGSWN + GGVPAAVEREQRTLVREIKALGRRGRWGDVLEV+ARARYQGTELN+IIYGC + + R E + +E K ++A G + R + S G + V + + + R EALAFF EM ++G+ RDE + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD MRG + A+DD++D L ++L L+ E +TP +A +P T ++ G + A S PP P+ RSYN+CIAACRRGG+ GLA+LFF +M+SRGL+PDVWTF+SA+L Q +P A F+ +L P + P+ A P WR L++LEEVD EGLGPDPPCI+L L+ECARAGRWEESRNLLEDLREASPPG S P +SRYNSVL LRNAPAR R A T PA DG GG+ SGAEGW GHVSGFL DMRAAGVTPD DTYQCAIRCATDAA+ DIA A
Sbjct: 150 EDENSLEEIQASIEELLGMQGLGSGSWNNEPGGGVPAAVEREQRTLVREIKALGRRGRWGDVLEVVARARYQGTELNSIIYGCAMNAVGRSGRYKECMILLDWSTEDIEPDEYCYKAAIIACSAANQWGRALDLFRRFQRATDGVGGASPPAAAGAAGDKAKGVTPGTAIYNAVITACARGLFTEEALAFFLEMGDRGIRRDEGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAMRG---NNAQDDDHD-----LVQILLLLGEELPDTPXXXXXXXAEERQEPLASNHSPTTATAKGGSPDDVEFRVAVPSSSLSSPPAPDVRSYNSCIAACRRGGQSGLAKLFFHDMLSRGLRPDVWTFKSAVLDRLQAQPPTXXXXXXXXXXTKAGTRRDQEVSSRPD----------FSGGQERLPPSRAPQQARSP---------WRALLVLLEEVDGEGLGPDPPCINLALTECARAGRWEESRNLLEDLREASPPGGSLRPGVSRYNSVLRTLRNAPARKCRTTFGAPTTPPLGGEVTPAGGDGIRVDGDFVDLEAAGGRWSGAEGWVQGHVSGFLEDMRAAGVTPDRDTYQCAIRCATDAALLDIAKA 757
BLAST of mRNA_S-firma_F_contig103.442.1 vs. uniprot
Match: D8LDQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ5_ECTSI) HSP 1 Score: 387 bits (993), Expect = 4.660e-118 Identity = 314/640 (49.06%), Postives = 363/640 (56.72%), Query Frame = 1
Query: 562 EEDASVEQIQASIEELLGMQGLGSGSWNKD--GGVPAAVEREQRTLVREIKALGRRGRWGDVLEVIARARYQGTELNAIIYGCVFYSPCNTRRASEALNEL-WRKIFMLAAGECFS---FWCREVFLMVSLLALSLKTTHAPGGVERIEVVCWADVRRSNVNQYC--------------RSALAPEALAFFREMEEQGVTRDEVSYNAAIDACARGGLWERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVMRGTAAHEAEDDENDPDSELLE-------------ELLRLVDEGESETPSPFLVAEITAPKTDSSP-GDGGATAAWTPAWSWPSSPPPPTPNARSYNACIAACRRGGKYGLARLFFLEMMSRGLKPDVWTFRSALLPHSQDRPAVTAEEWPAPMMPAAKQSESXXXXXXXXXXXXXXXXXXFAPPAWKLLPPQGPRSAPQPQRRSEAGVFWRQALLMLEEVDAEGLGPDPPCISLVLSECARAGRWEESRNLLEDLREASPPGSSYHPNISRYNSVLTLLRNAPARGRRGITAAAATA------------------EDPADLDG-GGKRSGAEGWTNGHVSGFLSDMRAAGVTPDNDTYQCAIRCATDAAMSDIATA 2322
E++ S+E+IQASIEELLGMQGLGSGSWN + GGVPAAVEREQRTLVREIKALGRRGRWGDVLEV+ARAR+QGTELN+IIYGC + + R E + L W + C+ C L L + A G+ A N + R EALAFF EM E+GV RDEV+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RG A E D D +L E + P + TA SP G AA + +S PP+P+ RSYN+CIAACRRGG+ GLARLFF +M+SRGL+PDVWTF+ A+L Q +P P XX F+ +L P + P+ A P WR L++LE+VD EGLGPDPPCI+L L+ECARAGRWEESR+LLEDLREASPPG S P +SRYNSVL LRNAPAR RR T A TA E+ DL+ GG+ SGAEGW +GHVSGFL DMRAAGVTPD DTYQCAIRCATDAA+ DIA A
Sbjct: 28 EDENSLEEIQASIEELLGMQGLGSGSWNNEPGGGVPAAVEREQRTLVREIKALGRRGRWGDVLEVVARARHQGTELNSIIYGCAMNAVGRSGRYKECMILLEWSTEDIEPDEYCYKAAIIACSAANQWGRALDLFRRFQRATDGIGGASPPAAAGAAGDNAKGFAPGTAIYNAVITACARGLFTEEALAFFLEMGERGVRRDEVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGNDAQE------DDDHDLAEIXXXXXXXXXXXXXXXXXXXXXXXQEPLASNHSPTTATAKGGSPDGVEFRVAALSSLFS------PPSPDVRSYNSCIAACRRGGQSGLARLFFHDMLSRGLRPDVWTFKCAVLGRLQAQP---------PTPXXXXXXXXXXTKAGTRQDPEISSRPGFSGGQERLPPSRAPQQARSP---------WRALLVLLEDVDGEGLGPDPPCINLALTECARAGRWEESRSLLEDLREASPPGGSLLPGVSRYNSVLRTLRNAPARDRR-TTLGAPTAPPLGGEVTPAGGGGSRIDEEFVDLEAAGGRWSGAEGWADGHVSGFLEDMRAAGVTPDRDTYQCAIRCATDAALLDIAKA 636 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig103.442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig103.442.1 >prot_S-firma_F_contig103.442.1 ID=prot_S-firma_F_contig103.442.1|Name=mRNA_S-firma_F_contig103.442.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=820bp MSLQSSCCNVMAFTVQPSFNAIFPVRCVQTNLRRRRRPLWTTTTPPPTTTback to top mRNA from alignment at S-firma_F_contig103:38344..44372+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig103.442.1 ID=mRNA_S-firma_F_contig103.442.1|Name=mRNA_S-firma_F_contig103.442.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=6029bp|location=Sequence derived from alignment at S-firma_F_contig103:38344..44372+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig103:38344..44372+ >mRNA_S-firma_F_contig103.442.1 ID=mRNA_S-firma_F_contig103.442.1|Name=mRNA_S-firma_F_contig103.442.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=4920bp|location=Sequence derived from alignment at S-firma_F_contig103:38344..44372+ (Sphaerotrichia firma ET2_F female)back to top |