prot_S-firma_F_contig10015.75.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10015.75.1
Unique Nameprot_S-firma_F_contig10015.75.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length207
Homology
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A087HKM7_ARAAL (HELICc2 domain-containing protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087HKM7_ARAAL)

HSP 1 Score: 270 bits (689), Expect = 2.360e-88
Identity = 130/207 (62.80%), Postives = 159/207 (76.81%), Query Frame = 0
Query:    1 MCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKPDPGLGT 207
            M   VPDG+V FF SYSYM  I+  WS++GIL +I ++KL+FIET+D+VETTLAL N++ AC RGRGA+F SVARGKVAEGIDF  H+GR+V+++G+PFQYTL+  L ARL YLRD F I+E DFLTFDALRQAAQC+GRVIRSK+DYGMM+ AD RY + DK SKLP WI  HL    L+ S   A  +AR+F R MA+P    GT
Sbjct:   35 MVSIVPDGVVCFFVSYSYMDGIIATWSETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDRGRGAVFFSVARGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAREFLRKMAQPYDKAGT 241          
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A7S0FJQ4_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJQ4_9STRA)

HSP 1 Score: 268 bits (684), Expect = 2.610e-87
Identity = 126/201 (62.69%), Postives = 158/201 (78.61%), Query Frame = 0
Query:    1 MCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKP 201
            MC ++PDG+VAFF SYSYM  I+++W   GIL Q+ + KL+FIETKD+VETTLAL N++ AC  GRGA+FLSVARGKV+EGI+F  H+GR VI+FG+PFQYTL+H LRARL YL+  + I+E DFL FDALRQA+QC+GRVIRSK+DYG+M+LADSRY + DK SKLP+WI Q L    L+ S   A Q  R F R M++P
Sbjct:   45 MCSSIPDGVVAFFTSYSYMENIISEWDGMGILRQLTKHKLVFIETKDVVETTLALDNYRRACDSGRGAVFLSVARGKVSEGINFDRHYGRAVIMFGVPFQYTLSHVLRARLEYLQTHYQIREQDFLNFDALRQASQCVGRVIRSKTDYGLMVLADSRYNRHDKRSKLPKWILQFLSDQYLNLSTDMALQHVRHFLRQMSQP 245          
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A7S1YWT9_TRICV (Hypothetical protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S1YWT9_TRICV)

HSP 1 Score: 266 bits (679), Expect = 3.900e-87
Identity = 123/201 (61.19%), Postives = 158/201 (78.61%), Query Frame = 0
Query:    1 MCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKP 201
            +C ++PDG+VAFF SYSYM  I+++W   G+L Q+ + KL+FIETKD+VETTLAL N++ AC  GRGA+FLSVARGKV+EGI+F  H+GR VI+FG+PFQYTL+H LRARL YL+  + I+E DFL FDALRQA+QC+GRVIRSK+DYG+M+ ADSRY + DK SKLP+WI Q +H   L+ S   A Q  + F R MA+P
Sbjct:    1 LCGSIPDGVVAFFTSYSYMESIISEWDGMGVLRQLTKHKLVFIETKDVVETTLALDNYRRACDSGRGAVFLSVARGKVSEGINFDRHYGRAVIMFGVPFQYTLSHVLRARLEYLQTHYQIREQDFLNFDALRQASQCVGRVIRSKTDYGLMIFADSRYNRHDKRSKLPKWILQFMHDGYLNLSTDMALQHVKHFLRVMAQP 201          
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A087GZK3_ARAAL (HELICc2 domain-containing protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087GZK3_ARAAL)

HSP 1 Score: 268 bits (685), Expect = 1.960e-86
Identity = 132/207 (63.77%), Postives = 161/207 (77.78%), Query Frame = 0
Query:    1 MCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKPDPGLGT 207
            M   VPDG+V FF SYSYM  I+  WS++GIL +I ++KL+FIET+D+VETTLAL N++ AC RGRGA+F SVARGKVAEGIDF  H+GR+V+++G+PFQYTL+  L ARL YLRD F I+E DFLTFDALRQAAQC+GRVIRSK+DYGMM+ AD RY + DK SKLP WI  HL  D LST +  A  +AR+F R MA+P    GT
Sbjct:  133 MVSIVPDGVVCFFVSYSYMDGIIATWSETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDRGRGAVFFSVARGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLR-DNLSTDM--AIHIAREFLRKMAQPYDKAGT 336          
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A2U1MI62_ARTAN (RAD3-like DNA-binding helicase protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MI62_ARTAN)

HSP 1 Score: 264 bits (675), Expect = 2.860e-86
Identity = 129/201 (64.18%), Postives = 155/201 (77.11%), Query Frame = 0
Query:    1 MCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKP 201
            M   VPDGIV FF SYSY   IV  W+++GIL +I +RKL+FIET+D+VETTLAL N++ AC  GRGA+F SVARGKVAEGIDF  H+GR+VI+FG+PFQYTL+  L ARL YLR+ F I+E DFLTFDALRQAAQC+GRVIRSK+DYGMM+ AD RY + DK SKLP WI  HL    L+ S   A  +AR+F R MA+P
Sbjct:   35 MVSVVPDGIVCFFVSYSYTDAIVNSWNETGILKEIMQRKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYTRHDKRSKLPGWILSHLREAHLNLSTDMAVHIAREFLRKMAQP 235          
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A7C9E1G5_OPUST (HELICc2 domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9E1G5_OPUST)

HSP 1 Score: 266 bits (679), Expect = 2.420e-85
Identity = 130/201 (64.68%), Postives = 154/201 (76.62%), Query Frame = 0
Query:    1 MCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKP 201
            M   VPDGIV FF SYSYM  IV  W+++GIL  I + KL+FIET+D+VETTLAL N++ AC  GRGA+F SVARGKVAEGIDF  H+GR+VI+FG+PFQYTL+  L ARL YLRD F I+E DFLTFDALRQAAQC+GRVIRSK+DYGMM+ AD RY + DK SKLP WI  HL    L+ S   A  +AR+F R MA+P
Sbjct:  145 MVSVVPDGIVCFFVSYSYMDAIVNTWNETGILKDIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDNFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREFLRKMAQP 345          
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A8J5SF54_ZIZPA (DNA helicase n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SF54_ZIZPA)

HSP 1 Score: 268 bits (684), Expect = 6.080e-84
Identity = 132/207 (63.77%), Postives = 156/207 (75.36%), Query Frame = 0
Query:    1 MCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKPDPGLGT 207
            M   VPDGIV FF SYSYM  IV  W++ GIL  I + KL+FIET D+VETTLAL N++ AC  GRGAIF SVARGKVAEGIDF  H+GR+VI+FG+PFQYTL+  L ARL YLR+ F I+E DFLTFDALRQAAQC+GRVIRSK+DYGMM+ AD RY + DK SKLP WI  HLH   L+ S   A  +AR+F R MA+P   +G+
Sbjct:  328 MSSAVPDGIVCFFVSYSYMDGIVNSWNEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAIFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIAREFLRRMAQPYDKMGS 534          
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A7S2M061_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M061_9STRA)

HSP 1 Score: 257 bits (657), Expect = 6.150e-84
Identity = 122/201 (60.70%), Postives = 153/201 (76.12%), Query Frame = 0
Query:    1 MCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKP 201
            +C ++PDG+VAFF SYSYM  I+++W   GIL Q+ + KL+FIETKD+VETTLAL NF+ AC  GRGA+FLSVARGKV+EGI+F  H+GR VI+FG+PFQYTL+H LRARL YL+  + I+E DFL FDALRQA+QC+GRVIRSK DYG+M+ ADSRY + DK +KLP WI   L    L+ S   A    + F R MA+P
Sbjct:    7 LCSSIPDGVVAFFTSYSYMESIISEWDGMGILRQLTKSKLVFIETKDVVETTLALDNFRRACDSGRGAVFLSVARGKVSEGINFDRHYGRAVIMFGVPFQYTLSHILRARLEYLQTNYQIREQDFLNFDALRQASQCVGRVIRSKIDYGLMIFADSRYNRHDKRTKLPGWIQNFLGDGQLNLSTDTAIAQVKHFLRVMAQP 207          
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A6N2KLZ5_SALVM (DNA helicase n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2KLZ5_SALVM)

HSP 1 Score: 266 bits (680), Expect = 6.200e-84
Identity = 131/207 (63.29%), Postives = 157/207 (75.85%), Query Frame = 0
Query:    1 MCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKPDPGLGT 207
            M   VPDGIV FF SYSYM  I+  W++SG+L +I + KL+FIET+D+VETTLAL N++ AC  GRGA+F SVARGKVAEGIDF  H+GR+VI+FGIPFQYTL+  L ARL YLRD F I+E DFLTFDALRQAAQC+GRVIRSK+DYGMM+ AD RY + DK SKLP WI  HL    L+ S   A  +AR+F R MA+P    G+
Sbjct:  272 MVSIVPDGIVCFFVSYSYMDGIINTWNESGLLKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGIPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREFLRKMAQPYDKTGS 478          
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Match: A0A0A9RIW3_ARUDO (DNA helicase n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A9RIW3_ARUDO)

HSP 1 Score: 266 bits (681), Expect = 9.090e-84
Identity = 131/207 (63.29%), Postives = 155/207 (74.88%), Query Frame = 0
Query:    1 MCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVETTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQYTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGMMLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAKPDPGLGT 207
            M   VPDGIV FF SYSYM  IV  W++ GIL  I + KL+FIET D+VETTLAL N++ AC  GRGA+F SVARGKVAEGIDF  H+GR+VI+FG+PFQYTL+  L ARL YLR+ F I+E DFLTFDALRQAAQC+GRVIRSK+DYGMM+ AD RY + DK SKLP WI  HLH   L+ S   A  +AR+F R MA+P    G+
Sbjct:  303 MASAVPDGIVCFFVSYSYMDGIVNSWNEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIAREFLRRMAQPYDKTGS 509          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10015.75.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A087HKM7_ARAAL2.360e-8862.80HELICc2 domain-containing protein n=1 Tax=Arabis a... [more]
A0A7S0FJQ4_9STRA2.610e-8762.69Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1YWT9_TRICV3.900e-8761.19Hypothetical protein n=2 Tax=Eupodiscales TaxID=33... [more]
A0A087GZK3_ARAAL1.960e-8663.77HELICc2 domain-containing protein n=1 Tax=Arabis a... [more]
A0A2U1MI62_ARTAN2.860e-8664.18RAD3-like DNA-binding helicase protein n=1 Tax=Art... [more]
A0A7C9E1G5_OPUST2.420e-8564.68HELICc2 domain-containing protein n=1 Tax=Opuntia ... [more]
A0A8J5SF54_ZIZPA6.080e-8463.77DNA helicase n=1 Tax=Zizania palustris TaxID=10376... [more]
A0A7S2M061_9STRA6.150e-8460.70Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A6N2KLZ5_SALVM6.200e-8463.29DNA helicase n=1 Tax=Salix viminalis TaxID=40686 R... [more]
A0A0A9RIW3_ARUDO9.090e-8463.29DNA helicase n=2 Tax=Arundo donax TaxID=35708 RepI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001945RAD3/XPD familyPRINTSPR00852XRODRMPGMNTDcoord: 110..132
score: 70.19
coord: 181..201
score: 38.1
IPR001945RAD3/XPD familyPANTHERPTHR11472:SF1GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH HELICASE SUBUNIT XPDcoord: 1..201
IPR006555ATP-dependent helicase, C-terminalSMARTSM00491Cxpdneu3coord: 16..160
e-value: 5.2E-59
score: 212.0
IPR006555ATP-dependent helicase, C-terminalPFAMPF13307Helicase_C_2coord: 1..173
e-value: 1.5E-44
score: 152.2
IPR013020ATP-dependent helicase Rad3/Chl1-likeTIGRFAMTIGR00604TIGR00604coord: 2..186
e-value: 7.8E-77
score: 257.4
NoneNo IPR availableGENE3D3.40.50.300coord: 1..172
e-value: 6.5E-39
score: 135.4
NoneNo IPR availablePANTHERPTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERcoord: 1..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10015contigS-firma_F_contig10015:124..744 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10015.75.1mRNA_S-firma_F_contig10015.75.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10015 112..744 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10015.75.1 ID=prot_S-firma_F_contig10015.75.1|Name=mRNA_S-firma_F_contig10015.75.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=207bp
MCETVPDGIVAFFPSYSYMTFIVTQWSKSGILHQIQERKLLFIETKDIVE
TTLALSNFKAACSRGRGAIFLSVARGKVAEGIDFKGHFGRMVILFGIPFQ
YTLAHTLRARLAYLRDQFGIQESDFLTFDALRQAAQCMGRVIRSKSDYGM
MLLADSRYGKQDKYSKLPRWISQHLHGDVLSTSIIEATQLARQFYRDMAK
PDPGLGT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013020Rad3/Chl1-like
IPR006555ATP-dep_Helicase_C
IPR001945RAD3/XPD